Conservation of cofitness between CCNA_00270 and CCNA_01920 in Caulobacter crescentus NA1000

89 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Caulobacter crescentus NA1000 1.0 CCNA_00270 Recombination protein recR 1.0 CCNA_01920 transcription-repair coupling factor Mfd 0.63 18
Caulobacter crescentus NA1000 Δfur 1.00 CCNA_00270 Recombination protein recR 1.00 CCNA_01920 transcription-repair coupling factor Mfd low > 67
Brevundimonas sp. GW460-12-10-14-LB2 0.73 A4249_RS15115 recombination mediator RecR 0.69 A4249_RS04775 transcription-repair coupling factor low > 48
Magnetospirillum magneticum AMB-1 0.66 AMB_RS20755 recombination protein RecR 0.54 AMB_RS12390 transcription-repair coupling factor low > 64
Azospirillum sp. SherDot2 0.65 MPMX19_02195 Recombination protein RecR 0.56 MPMX19_00876 Transcription-repair-coupling factor low > 112
Rhodopseudomonas palustris CGA009 0.63 TX73_003195 recombination mediator RecR 0.54 TX73_013805 transcription-repair coupling factor — —
Rhodospirillum rubrum S1H 0.63 Rru_A3471 RecR protein (NCBI) 0.52 Rru_A1726 Transcription-repair coupling factor (NCBI) — —
Sphingomonas koreensis DSMZ 15582 0.63 Ga0059261_0645 DNA replication and repair protein RecR 0.52 Ga0059261_0960 transcription-repair coupling factor (mfd) 0.38 16
Bosea sp. OAE506 0.62 ABIE41_RS04035 recombination mediator RecR 0.57 ABIE41_RS15825 transcription-repair coupling factor — —
Sinorhizobium meliloti 1021 0.61 SMc02908 recombination protein RecR 0.53 SMc04450 transcription-repair coupling factor 0.34 25
Agrobacterium fabrum C58 0.60 Atu0093 Recombination protein 0.54 Atu1778 transcription-repair coupling factor 0.39 18
Phaeobacter inhibens DSM 17395 0.59 PGA1_c30290 recombination protein RecR 0.52 PGA1_c14920 transcription-repair-coupling factor Mfd 0.20 45
Rhizobium sp. OAE497 0.57 ABIE40_RS00300 recombination mediator RecR 0.53 ABIE40_RS09310 transcription-repair coupling factor low > 107
Dinoroseobacter shibae DFL-12 0.56 Dshi_0648 recombination protein RecR (RefSeq) 0.52 Dshi_1561 transcription-repair coupling factor (RefSeq) low > 64
Acinetobacter radioresistens SK82 0.46 MPMX26_01643 Recombination protein RecR 0.31 MPMX26_01319 Transcription-repair-coupling factor low > 36
Dechlorosoma suillum PS 0.42 Dsui_1811 recombination protein RecR 0.33 Dsui_2385 transcription-repair coupling factor Mfd 0.95 2
Pseudomonas stutzeri RCH2 0.41 Psest_2545 recombination protein RecR 0.34 Psest_1653 transcription-repair coupling factor (mfd) 0.54 10
Pseudomonas sp. RS175 0.40 PFR28_01077 Recombination protein RecR 0.33 PFR28_01123 Transcription-repair-coupling factor low > 88
Bifidobacterium breve UCC2003 0.40 BBR_RS10990 recombination protein RecR 0.25 BBR_RS14115 transcription-repair coupling factor low > 34
Kangiella aquimarina DSM 16071 0.40 B158DRAFT_2480 DNA replication and repair protein RecR 0.34 B158DRAFT_1800 transcription-repair coupling factor 0.53 13
Pseudomonas simiae WCS417 0.39 PS417_20800 recombination protein RecR 0.32 PS417_07635 transcription-repair coupling factor 0.34 13
Pseudomonas fluorescens FW300-N2E2 0.39 Pf6N2E2_2325 Recombination protein RecR 0.33 Pf6N2E2_2278 Transcription-repair coupling factor 0.34 25
Pseudomonas fluorescens FW300-N2C3 0.39 AO356_02495 recombination protein RecR 0.33 AO356_02270 transcription-repair coupling factor 0.43 19
Echinicola vietnamensis KMM 6221, DSM 17526 0.39 Echvi_1987 recombination protein RecR 0.25 Echvi_1312 transcription-repair coupling factor (mfd) 0.40 33
Pseudomonas fluorescens FW300-N2E3 0.39 AO353_00675 recombination protein RecR 0.33 AO353_00435 transcription-repair coupling factor 0.48 9
Herbaspirillum seropedicae SmR1 0.39 HSERO_RS18355 recombinase RecR 0.32 HSERO_RS15180 transcription-repair coupling factor 0.43 27
Pseudomonas fluorescens FW300-N1B4 0.39 Pf1N1B4_3864 Recombination protein RecR 0.33 Pf1N1B4_3916 Transcription-repair coupling factor low > 87
Marinobacter adhaerens HP15 0.39 HP15_1883 recombination protein RecR 0.33 HP15_2257 transcription-repair-coupling factor — —
Pseudomonas fluorescens SBW25-INTG 0.39 PFLU_RS22415 recombination protein RecR 0.32 PFLU_RS07710 transcription-repair coupling factor low > 109
Pseudomonas fluorescens GW456-L13 0.39 PfGW456L13_4074 Recombination protein RecR 0.32 PfGW456L13_4027 Transcription-repair coupling factor 0.32 21
Pseudomonas fluorescens SBW25 0.39 PFLU_RS22415 recombination protein RecR 0.32 PFLU_RS07710 transcription-repair coupling factor low > 109
Shewanella loihica PV-4 0.39 Shew_2233 recombination protein RecR (RefSeq) 0.32 Shew_1630 transcription-repair coupling factor (RefSeq) low > 60
Pseudomonas syringae pv. syringae B728a ΔmexB 0.38 Psyr_3396 DNA replication and repair protein RecR 0.33 Psyr_1896 transcription-repair coupling factor low > 86
Pseudomonas syringae pv. syringae B728a 0.38 Psyr_3396 DNA replication and repair protein RecR 0.33 Psyr_1896 transcription-repair coupling factor low > 86
Synechococcus elongatus PCC 7942 0.38 Synpcc7942_1369 recR recombination protein RecR 0.27 Synpcc7942_1326 mfd transcription-repair coupling factor — —
Variovorax sp. SCN45 0.38 GFF1110 Recombination protein RecR 0.32 GFF412 Transcription-repair coupling factor low > 127
Pseudomonas sp. S08-1 0.38 OH686_02385 recombination protein RecR 0.34 OH686_21990 transcription-repair coupling factor low > 80
Alteromonas macleodii MIT1002 0.38 MIT1002_02649 Recombination protein RecR 0.33 MIT1002_01646 Transcription-repair-coupling factor low > 70
Shewanella amazonensis SB2B 0.38 Sama_1312 recR recombination protein RecR (RefSeq) 0.33 Sama_1330 transcription-repair coupling factor (RefSeq) 0.44 17
Pseudomonas putida KT2440 0.38 PP_4267 Recombination protein RecR 0.33 PP_2148 transcription-repair coupling factor low > 96
Desulfovibrio vulgaris Miyazaki F 0.38 DvMF_2271 recombination protein RecR (RefSeq) 0.26 DvMF_0285 transcription-repair coupling factor (RefSeq) low > 51
Variovorax sp. OAS795 0.38 ABID97_RS14700 recombination mediator RecR 0.31 ABID97_RS17285 transcription-repair coupling factor 0.33 52
Hydrogenophaga sp. GW460-11-11-14-LB1 0.38 GFF4253 Recombination protein RecR 0.32 GFF4934 Transcription-repair coupling factor low > 90
Shewanella sp. ANA-3 0.38 Shewana3_2444 recR recombination protein RecR (RefSeq) 0.34 Shewana3_2289 transcription-repair coupling factor (RefSeq) low > 73
Ralstonia sp. UNC404CL21Col 0.38 ABZR87_RS10810 recombination mediator RecR 0.32 ABZR87_RS13240 transcription-repair coupling factor low > 80
Paraburkholderia bryophila 376MFSha3.1 0.37 H281DRAFT_00834 DNA replication and repair protein RecR 0.32 H281DRAFT_00880 transcription-repair coupling factor low > 103
Paraburkholderia graminis OAS925 0.37 ABIE53_002048 recombination protein RecR 0.32 ABIE53_002095 transcription-repair coupling factor (superfamily II helicase) low > 113
Mycobacterium tuberculosis H37Rv 0.37 Rv3715c Probable recombination protein RecR 0.24 Rv1020 Probable transcription-repair coupling factor Mfd (TRCF) low > 58
Shewanella oneidensis MR-1 0.37 SO2015 recR recombination protein RecR (NCBI ptt file) 0.33 SO2255 mfd transcription-repair coupling factor (NCBI ptt file) low > 76
Pectobacterium carotovorum WPP14 0.37 HER17_RS15695 recombination mediator RecR 0.33 HER17_RS08775 transcription-repair coupling factor low > 75
Lysobacter sp. OAE881 0.37 ABIE51_RS14010 recombination mediator RecR 0.33 ABIE51_RS14320 transcription-repair coupling factor low > 62
Burkholderia phytofirmans PsJN 0.37 BPHYT_RS09070 recombination protein RecR 0.32 BPHYT_RS09290 helicase low > 109
Paraburkholderia sabiae LMG 24235 0.37 QEN71_RS22285 recombination mediator RecR 0.32 QEN71_RS22060 transcription-repair coupling factor low > 153
Rahnella sp. WP5 0.36 EX31_RS22525 recombination protein RecR 0.32 EX31_RS24520 transcription-repair coupling factor low > 89
Dyella japonica UNC79MFTsu3.2 0.36 ABZR86_RS06235 recombination mediator RecR 0.34 ABZR86_RS21210 transcription-repair coupling factor 0.87 3
Escherichia fergusonii Becca 0.36 EFB2_03586 Recombination protein RecR 0.32 EFB2_02861 Transcription-repair-coupling factor low > 86
Rhodanobacter sp. FW510-T8 0.36 OKGIIK_05655 recR recombination mediator RecR 0.34 OKGIIK_09105 mfd transcription-repair coupling factor low > 52
Escherichia coli ECRC101 0.36 OKFHMN_08155 recR recombination mediator RecR 0.32 OKFHMN_03470 mfd transcription-repair coupling factor — —
Escherichia coli ECRC101 0.36 MCAODC_27380 recR recombination mediator RecR 0.32 MCAODC_22830 mfd transcription-repair coupling factor — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.36 OHPLBJKB_03202 Recombination protein RecR 0.32 OHPLBJKB_02552 Transcription-repair-coupling factor low > 73
Escherichia coli BW25113 0.36 b0472 recR recombination protein RecR (NCBI) 0.32 b1114 mfd transcription-repair coupling factor (NCBI) 0.51 15
Escherichia coli BL21 0.36 ECD_00423 gap repair protein 0.32 ECD_01110 transcription-repair coupling factor low > 60
Escherichia coli ECOR27 0.36 NOLOHH_01085 recR recombination mediator RecR 0.32 NOLOHH_20995 mfd transcription-repair coupling factor low > 57
Escherichia coli ECRC98 0.36 JDDGAC_11805 recR recombination mediator RecR 0.32 JDDGAC_07130 mfd transcription-repair coupling factor — —
Escherichia coli ECRC62 0.36 BNILDI_22505 recR recombination mediator RecR 0.32 BNILDI_19160 mfd transcription-repair coupling factor — —
Dickeya dadantii 3937 0.36 DDA3937_RS05790 recombination protein RecR 0.32 DDA3937_RS13000 transcription-repair coupling factor low > 74
Escherichia coli ECRC99 0.36 KEDOAH_19810 recR recombination mediator RecR 0.32 KEDOAH_24285 mfd transcription-repair coupling factor — —
Escherichia coli ECOR38 0.36 HEPCGN_06770 recR recombination mediator RecR 0.32 HEPCGN_24015 mfd transcription-repair coupling factor low > 85
Escherichia coli ECRC102 0.36 NIAGMN_06210 recR recombination mediator RecR 0.32 NIAGMN_24360 mfd transcription-repair coupling factor — —
Cupriavidus basilensis FW507-4G11 0.36 RR42_RS13270 recombination protein RecR 0.31 RR42_RS07845 transcription-repair coupling factor 0.49 14
Klebsiella michiganensis M5al 0.36 BWI76_RS06830 recombination protein RecR 0.33 BWI76_RS11205 transcription-repair coupling factor low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.36 GFF4390 Recombination protein RecR 0.32 GFF3397 Transcription-repair coupling factor low > 78
Ralstonia solanacearum IBSBF1503 0.36 RALBFv3_RS15170 recombination protein RecR 0.32 RALBFv3_RS01445 transcription-repair coupling factor low > 76
Ralstonia solanacearum UW163 0.36 UW163_RS12640 recombination protein RecR 0.32 UW163_RS14755 transcription-repair coupling factor — —
Rhodanobacter denitrificans MT42 0.36 LRK55_RS01020 recombination mediator RecR 0.35 LRK55_RS01815 transcription-repair coupling factor low > 63
Ralstonia solanacearum PSI07 0.35 RPSI07_RS18205 recombination protein RecR 0.31 RPSI07_RS16040 transcription-repair coupling factor 0.45 68
Ralstonia solanacearum GMI1000 0.35 RS_RS05980 recombination protein RecR 0.32 RS_RS08275 transcription-repair coupling factor low > 80
Rhodanobacter denitrificans FW104-10B01 0.35 LRK54_RS01250 recombination mediator RecR 0.35 LRK54_RS02040 transcription-repair coupling factor low > 59
Desulfovibrio vulgaris Hildenborough JW710 0.35 DVU3200 recR recombination protein RecR (TIGR) 0.26 DVU1903 mfd transcription-repair coupling factor (TIGR) low > 55
Enterobacter sp. TBS_079 0.35 MPMX20_01074 Recombination protein RecR 0.32 MPMX20_01795 Transcription-repair-coupling factor low > 85
Enterobacter asburiae PDN3 0.35 EX28DRAFT_2485 DNA replication and repair protein RecR 0.33 EX28DRAFT_1816 transcription-repair coupling factor (mfd) low > 76
Dickeya dianthicola 67-19 0.35 HGI48_RS05840 recombination protein RecR 0.32 HGI48_RS13065 transcription-repair coupling factor — —
Dickeya dianthicola ME23 0.35 DZA65_RS06165 recombination protein RecR 0.32 DZA65_RS13530 transcription-repair coupling factor low > 75
Castellaniella sp019104865 MT123 0.35 ABCV34_RS15480 recombination mediator RecR 0.31 ABCV34_RS08660 transcription-repair coupling factor low > 48
Serratia liquefaciens MT49 0.35 IAI46_05240 recombination protein RecR 0.33 IAI46_10320 transcription-repair coupling factor low > 86
Erwinia tracheiphila SCR3 0.35 LU632_RS18105 recR recombination mediator RecR 0.32 LU632_RS14730 mfd transcription-repair coupling factor low > 74
Vibrio cholerae E7946 ATCC 55056 0.35 CSW01_05375 recombination protein RecR 0.33 CSW01_09445 transcription-repair coupling factor low > 62
Acidovorax sp. GW101-3H11 0.34 Ac3H11_473 Recombination protein RecR 0.32 Ac3H11_328 Transcription-repair coupling factor low > 79
Pantoea sp. MT58 0.34 IAI47_14465 recombination protein RecR 0.32 IAI47_11975 transcription-repair coupling factor low > 76
Xanthomonas campestris pv. campestris strain 8004 0.34 Xcc-8004.4012.1 Recombination protein RecR 0.32 Xcc-8004.1775.1 Transcription-repair coupling factor low > 74

Not shown: 11 genomes with orthologs for CCNA_00270 only; 0 genomes with orthologs for CCNA_01920 only