| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Burkholderia phytofirmans PsJN | 1.0 | BPHYT_RS33580 | | geranyltranstransferase | 1.0 | BPHYT_RS13645 | | threonine--tRNA ligase | 0.40 | 19 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.96 | H281DRAFT_06016 | | farnesyl-diphosphate synthase | 0.99 | H281DRAFT_04501 | | Ser-tRNA(Thr) hydrolase /threonyl-tRNA synthetase | — | — |
| Paraburkholderia graminis OAS925 | 0.95 | ABIE53_004858 | | farnesyl diphosphate synthase | 0.84 | ABIE53_002904 | | threonyl-tRNA synthetase | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.86 | QEN71_RS15235 | | polyprenyl synthetase family protein | 0.98 | QEN71_RS05275 | | threonine--tRNA ligase | — | — |
| Herbaspirillum seropedicae SmR1 | 0.62 | HSERO_RS19130 | | geranyl transferase | 0.78 | HSERO_RS09880 | | threonyl-tRNA synthetase | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.57 | RR42_RS15010 | | geranyl transferase | 0.81 | RR42_RS06600 | | threonyl-tRNA synthetase | — | — |
| Dechlorosoma suillum PS | 0.57 | Dsui_3509 | | geranylgeranyl pyrophosphate synthase | 0.74 | Dsui_1958 | | threonyl-tRNA synthetase | — | — |
| Ralstonia sp. UNC404CL21Col | 0.56 | ABZR87_RS15640 | | polyprenyl synthetase family protein | 0.71 | ABZR87_RS13735 | | threonine--tRNA ligase | — | — |
| Ralstonia solanacearum UW163 | 0.55 | UW163_RS09960 | | (2E,6E)-farnesyl diphosphate synthase | 0.79 | UW163_RS15105 | | threonine--tRNA ligase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.55 | RALBFv3_RS03710 | | (2E,6E)-farnesyl diphosphate synthase | 0.79 | RALBFv3_RS01795 | | threonine--tRNA ligase | — | — |
| Ralstonia solanacearum PSI07 | 0.54 | RPSI07_RS13520 | | polyprenyl synthetase family protein | 0.79 | RPSI07_RS15695 | | threonine--tRNA ligase | — | — |
| Ralstonia solanacearum GMI1000 | 0.52 | RS_RS11155 | | polyprenyl synthetase family protein | 0.78 | RS_RS07940 | | threonine--tRNA ligase | — | — |
| Castellaniella sp019104865 MT123 | 0.52 | ABCV34_RS02230 | | polyprenyl synthetase family protein | 0.70 | ABCV34_RS04805 | | threonine--tRNA ligase | — | — |
| Lysobacter sp. OAE881 | 0.49 | ABIE51_RS06815 | | (2E,6E)-farnesyl diphosphate synthase | 0.69 | ABIE51_RS15270 | | threonine--tRNA ligase | — | — |
| Rhodanobacter sp. FW510-T8 | 0.48 | OKGIIK_10250 | ispA | geranyl transferase | 0.68 | OKGIIK_10110 | thrS | threonine--tRNA ligase | — | — |
| Erwinia tracheiphila SCR3 | 0.48 | LU632_RS23555 | | polyprenyl synthetase family protein | 0.59 | LU632_RS10890 | thrS | threonine--tRNA ligase | — | — |
| Variovorax sp. SCN45 | 0.47 | GFF6129 | | (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) | 0.65 | GFF4832 | | Threonyl-tRNA synthetase (EC 6.1.1.3) | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.46 | LRK54_RS03365 | | polyprenyl synthetase family protein | 0.70 | LRK54_RS03230 | | threonine--tRNA ligase | — | — |
| Rhodanobacter denitrificans MT42 | 0.46 | LRK55_RS03115 | | polyprenyl synthetase family protein | 0.70 | LRK55_RS02980 | | threonine--tRNA ligase | — | — |
| Acidovorax sp. GW101-3H11 | 0.45 | Ac3H11_3565 | | Octaprenyl diphosphate synthase (EC 2.5.1.90) / Dimethylallyltransferase (EC 2.5.1.1) / (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) / Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29) | 0.69 | Ac3H11_2830 | | Threonyl-tRNA synthetase (EC 6.1.1.3) | — | — |
| Variovorax sp. OAS795 | 0.45 | ABID97_RS09275 | | polyprenyl synthetase family protein | 0.66 | ABID97_RS11120 | | threonine--tRNA ligase | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.45 | ABZR86_RS21690 | | farnesyl diphosphate synthase | 0.70 | ABZR86_RS09695 | | threonine--tRNA ligase | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.44 | Xcc-8004.1890.1 | | hypothetical protein | 0.66 | Xcc-8004.2067.1 | | Threonyl-tRNA synthetase (EC 6.1.1.3) | — | — |
| Marinobacter adhaerens HP15 | 0.44 | HP15_581 | | geranyltranstransferase | 0.66 | HP15_1071 | | threonyl-tRNA synthetase | — | — |
| Kangiella aquimarina DSM 16071 | 0.44 | B158DRAFT_1919 | | farnesyl-diphosphate synthase (EC 2.5.1.10) | 0.64 | B158DRAFT_1255 | | threonyl-tRNA synthetase (EC 6.1.1.3) | — | — |
| Pseudomonas sp. S08-1 | 0.44 | OH686_15785 | | (2E,6E)-farnesyl diphosphate synthase | 0.65 | OH686_22840 | | threonine--tRNA ligase | — | — |
| Pseudomonas putida KT2440 | 0.43 | PP_0528 | | farnesyl diphosphate synthase | 0.66 | PP_2465 | | Threonine--tRNA ligase | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.42 | PfGW456L13_1326 | | Octaprenyl diphosphate synthase (EC 2.5.1.90) / Dimethylallyltransferase (EC 2.5.1.1) / (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) / Geranylgeranyl diphosphate synthase (EC 2.5.1.29) | 0.66 | PfGW456L13_3900 | | Threonyl-tRNA synthetase (EC 6.1.1.3) | — | — |
| Shewanella loihica PV-4 | 0.42 | Shew_2770 | | polyprenyl synthetase (RefSeq) | 0.60 | Shew_2032 | | threonyl-tRNA synthetase (RefSeq) | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.42 | AO353_06650 | | geranyl transferase | 0.67 | AO353_20875 | | threonine--tRNA ligase | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.42 | Pf1N1B4_2662 | | Octaprenyl diphosphate synthase (EC 2.5.1.90) / Dimethylallyltransferase (EC 2.5.1.1) / (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) / Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29) | 0.66 | Pf1N1B4_6023 | | Threonyl-tRNA synthetase (EC 6.1.1.3) | — | — |
| Pseudomonas stutzeri RCH2 | 0.42 | Psest_0642 | | Geranylgeranyl pyrophosphate synthase | 0.65 | Psest_1968 | | threonyl-tRNA synthetase | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.41 | Pf6N2E2_4933 | | Octaprenyl-diphosphate synthase (EC 2.5.1.-) / Dimethylallyltransferase (EC 2.5.1.1) / Geranyltranstransferase (farnesyldiphosphate synthase) (EC 2.5.1.10) / Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29) | 0.66 | Pf6N2E2_173 | | Threonyl-tRNA synthetase (EC 6.1.1.3) | — | — |
| Pantoea sp. MT58 | 0.41 | IAI47_14735 | | (2E,6E)-farnesyl diphosphate synthase | 0.61 | IAI47_10985 | | threonine--tRNA ligase | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.41 | GFF5576 | | Octaprenyl diphosphate synthase (EC 2.5.1.90) / Dimethylallyltransferase (EC 2.5.1.1) / (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) / Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29) | 0.72 | GFF4197 | | Threonyl-tRNA synthetase (EC 6.1.1.3) | — | — |
| Pseudomonas sp. RS175 | 0.41 | PFR28_03936 | | Farnesyl diphosphate synthase | 0.65 | PFR28_02725 | | Threonine--tRNA ligase | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.41 | Psyr_0605 | | farnesyl-diphosphate synthase | 0.66 | Psyr_2162 | | Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase | — | — |
| Shewanella oneidensis MR-1 | 0.41 | SO1526 | ispA | geranyltranstransferase (NCBI ptt file) | 0.61 | SO2299 | thrS | threonyl-tRNA synthetase (NCBI ptt file) | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.41 | Psyr_0605 | | farnesyl-diphosphate synthase | 0.66 | Psyr_2162 | | Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase | — | — |
| Shewanella amazonensis SB2B | 0.40 | Sama_2435 | | geranyltranstransferase (RefSeq) | 0.60 | Sama_1765 | | threonyl-tRNA synthetase (RefSeq) | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.40 | AO356_14995 | | geranyl transferase | 0.65 | AO356_00910 | | threonine--tRNA ligase | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.40 | CSW01_04565 | | (2E,6E)-farnesyl diphosphate synthase | 0.60 | CSW01_15385 | | threonine--tRNA ligase | — | — |
| Rahnella sp. WP5 | 0.40 | EX31_RS22160 | | (2E,6E)-farnesyl diphosphate synthase | 0.59 | EX31_RS14075 | | threonine--tRNA ligase | — | — |
| Klebsiella michiganensis M5al | 0.40 | BWI76_RS06385 | | (2E,6E)-farnesyl diphosphate synthase | 0.60 | BWI76_RS17150 | | threonine--tRNA ligase | — | — |
| Enterobacter sp. TBS_079 | 0.40 | MPMX20_01012 | | Farnesyl diphosphate synthase | 0.61 | MPMX20_01895 | | Threonine--tRNA ligase | — | — |
| Pectobacterium carotovorum WPP14 | 0.40 | HER17_RS15930 | | (2E,6E)-farnesyl diphosphate synthase | 0.60 | HER17_RS11520 | | threonine--tRNA ligase | — | — |
| Enterobacter asburiae PDN3 | 0.39 | EX28DRAFT_2550 | | Geranylgeranyl pyrophosphate synthase | 0.60 | EX28DRAFT_1726 | | threonyl-tRNA synthetase (EC 6.1.1.3) | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.39 | GFF4325 | | Octaprenyl diphosphate synthase (EC 2.5.1.90) / Dimethylallyltransferase (EC 2.5.1.1) / (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) / Geranylgeranyl diphosphate synthase (EC 2.5.1.29) | 0.61 | GFF3522 | | Threonyl-tRNA synthetase (EC 6.1.1.3) | — | — |
| Pseudomonas simiae WCS417 | 0.38 | PS417_25200 | | geranyl transferase | 0.65 | PS417_18345 | | threonyl-tRNA synthetase | — | — |
| Escherichia coli ECRC101 | 0.38 | MCAODC_27640 | ispA | (2E,6E)-farnesyl diphosphate synthase | 0.60 | MCAODC_18355 | thrS | threonine--tRNA ligase | — | — |
| Escherichia coli ECRC100 | 0.38 | OKFHMN_08415 | ispA | (2E,6E)-farnesyl diphosphate synthase | 0.60 | OKFHMN_27055 | thrS | threonine--tRNA ligase | — | — |
| Escherichia coli ECRC99 | 0.38 | KEDOAH_19550 | ispA | (2E,6E)-farnesyl diphosphate synthase | 0.60 | KEDOAH_01055 | thrS | threonine--tRNA ligase | — | — |
| Escherichia coli ECRC102 | 0.38 | NIAGMN_06470 | ispA | (2E,6E)-farnesyl diphosphate synthase | 0.60 | NIAGMN_01010 | thrS | threonine--tRNA ligase | — | — |
| Escherichia coli ECRC98 | 0.38 | JDDGAC_12070 | ispA | (2E,6E)-farnesyl diphosphate synthase | 0.60 | JDDGAC_01630 | thrS | threonine--tRNA ligase | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.38 | OHPLBJKB_03255 | | Farnesyl diphosphate synthase | 0.60 | OHPLBJKB_02015 | | Threonine--tRNA ligase | — | — |
| Escherichia coli ECRC62 | 0.38 | BNILDI_22780 | ispA | (2E,6E)-farnesyl diphosphate synthase | 0.60 | BNILDI_16370 | thrS | threonine--tRNA ligase | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.38 | PFLU_RS26840 | | hypothetical protein | 0.65 | PFLU_RS20320 | | threonine--tRNA ligase | — | — |
| Escherichia coli Nissle 1917 | 0.38 | ECOLIN_RS02540 | | (2E,6E)-farnesyl diphosphate synthase | 0.60 | ECOLIN_RS09600 | | threonine--tRNA ligase | — | — |
| Pseudomonas fluorescens SBW25 | 0.38 | PFLU_RS26840 | | hypothetical protein | 0.65 | PFLU_RS20320 | | threonine--tRNA ligase | — | — |
| Escherichia coli ECOR38 | 0.38 | HEPCGN_07045 | ispA | (2E,6E)-farnesyl diphosphate synthase | 0.60 | HEPCGN_05420 | thrS | threonine--tRNA ligase | — | — |
| Escherichia coli BW25113 | 0.38 | b0421 | ispA | geranyltranstransferase (NCBI) | 0.60 | b1719 | thrS | threonyl-tRNA synthetase (NCBI) | — | — |
| Escherichia coli ECOR27 | 0.38 | NOLOHH_01365 | ispA | (2E,6E)-farnesyl diphosphate synthase | 0.60 | NOLOHH_17575 | thrS | threonine--tRNA ligase | — | — |
| Escherichia fergusonii Becca | 0.38 | EFB2_03636 | | Farnesyl diphosphate synthase | 0.60 | EFB2_02273 | | Threonine--tRNA ligase | — | — |
| Escherichia coli BL21 | 0.38 | ECD_00369 | | geranyltranstransferase | 0.60 | ECD_01688 | | threonyl-tRNA synthetase | — | — |
| Shewanella sp. ANA-3 | 0.37 | Shewana3_2900 | | farnesyl-diphosphate synthase (RefSeq) | 0.61 | Shewana3_2043 | | threonyl-tRNA synthetase (RefSeq) | — | — |
| Acinetobacter radioresistens SK82 | 0.37 | MPMX26_00661 | | Farnesyl diphosphate synthase | 0.62 | MPMX26_00553 | | Threonine--tRNA ligase | — | — |
| Dickeya dianthicola 67-19 | 0.37 | HGI48_RS05595 | | (2E,6E)-farnesyl diphosphate synthase | 0.60 | HGI48_RS11480 | | threonine--tRNA ligase | — | — |
| Dickeya dadantii 3937 | 0.37 | DDA3937_RS05535 | | (2E,6E)-farnesyl diphosphate synthase | 0.60 | DDA3937_RS11435 | | threonine--tRNA ligase | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.37 | Ga0059261_1008 | | Geranylgeranyl pyrophosphate synthase | 0.54 | Ga0059261_2729 | | threonyl-tRNA synthetase (EC 6.1.1.3) | — | — |
| Dickeya dianthicola ME23 | 0.37 | DZA65_RS05920 | | (2E,6E)-farnesyl diphosphate synthase | 0.60 | DZA65_RS11820 | | threonine--tRNA ligase | — | — |
| Rhodospirillum rubrum S1H | 0.36 | Rru_A2618 | | Polyprenyl synthetase (NCBI) | 0.63 | Rru_A3487 | | Threonyl-tRNA synthetase, class IIa (NCBI) | — | — |
| Serratia liquefaciens MT49 | 0.36 | IAI46_04930 | | (2E,6E)-farnesyl diphosphate synthase | 0.60 | IAI46_10955 | | threonine--tRNA ligase | — | — |
| Azospirillum brasilense Sp245 | 0.36 | AZOBR_RS20795 | | farnesyl-diphosphate synthase | 0.61 | AZOBR_RS13510 | | threonyl-tRNA synthetase | — | — |
| Azospirillum sp. SherDot2 | 0.36 | MPMX19_05065 | | Farnesyl diphosphate synthase | 0.61 | MPMX19_02081 | | Threonine--tRNA ligase | — | — |
| Rhodopseudomonas palustris CGA009 | 0.34 | TX73_002715 | | polyprenyl synthetase family protein | 0.55 | TX73_017610 | | threonine--tRNA ligase | — | — |
| Synechococcus elongatus PCC 7942 | 0.34 | Synpcc7942_0776 | crtE | farnesyl-diphosphate synthase | 0.38 | Synpcc7942_2606 | thrS | threonyl-tRNA synthetase | — | — |
| Alteromonas macleodii MIT1002 | 0.33 | MIT1002_02692 | | Farnesyl diphosphate synthase | 0.60 | MIT1002_01603 | | Threonine--tRNA ligase | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.32 | CCNA_02150 | | dimethylallyltransferase/geranyltranstransferase | 0.56 | CCNA_00496 | | threonyl-tRNA synthetase | — | — |
| Caulobacter crescentus NA1000 | 0.32 | CCNA_02150 | | dimethylallyltransferase/geranyltranstransferase | 0.56 | CCNA_00496 | | threonyl-tRNA synthetase | — | — |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.32 | DVU1349 | SelGGPS | geranylgeranyl diphosphate synthase (TIGR) | 0.48 | DVU2538 | thrS | threonyl-tRNA synthetase (TIGR) | — | — |
| Fusobacterium nucleatum SB010 | 0.31 | HUW76_03605 | | polyprenyl synthetase family protein | 0.48 | HUW76_06100 | | threonine--tRNA ligase | — | — |
| Agrobacterium fabrum C58 | 0.30 | Atu2721 | | geranyltranstransferase | 0.55 | Atu1746 | | threonyl-tRNA synthetase | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.30 | A4249_RS09695 | | polyprenyl synthetase family protein | 0.55 | A4249_RS12940 | | threonine--tRNA ligase | — | — |
| Sinorhizobium meliloti 1021 | 0.30 | SMc03884 | | geranyltranstransferase | 0.54 | SMc01010 | | threonyl-tRNA synthetase | — | — |
| Magnetospirillum magneticum AMB-1 | 0.29 | AMB_RS14610 | | polyprenyl synthetase family protein | 0.62 | AMB_RS01720 | | threonine--tRNA ligase | — | — |
| Desulfovibrio vulgaris Miyazaki F | 0.29 | DvMF_0125 | | Polyprenyl synthetase (RefSeq) | 0.45 | DvMF_0984 | | threonyl-tRNA synthetase (RefSeq) | — | — |
| Dinoroseobacter shibae DFL-12 | 0.29 | Dshi_3295 | | Polyprenyl synthetase (RefSeq) | 0.54 | Dshi_0777 | | threonyl-tRNA synthetase (RefSeq) | — | — |
| Rhizobium sp. OAE497 | 0.29 | ABIE40_RS18720 | | polyprenyl synthetase family protein | 0.54 | ABIE40_RS09700 | | threonine--tRNA ligase | — | — |
| Phaeobacter inhibens DSM 17395 | 0.29 | PGA1_c34160 | | geranyltranstransferase IspA | 0.55 | PGA1_c20990 | | threonyl-tRNA synthetase ThrS | — | — |
| Bosea sp. OAE506 | 0.28 | ABIE41_RS08680 | | polyprenyl synthetase family protein | 0.53 | ABIE41_RS14085 | | threonine--tRNA ligase | — | — |
Not shown: 2 genomes with orthologs for BPHYT_RS33580 only; 12 genomes with orthologs for BPHYT_RS13645 only