Conservation of cofitness between BPHYT_RS16975 and BPHYT_RS06545 in Burkholderia phytofirmans PsJN

89 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS16975 shikimate 5-dehydrogenase 1.0 BPHYT_RS06545 acetolactate synthase 0.73 14
Paraburkholderia graminis OAS925 0.93 ABIE53_003560 shikimate dehydrogenase 0.99 ABIE53_001574 acetolactate synthase-1/2/3 large subunit
Paraburkholderia bryophila 376MFSha3.1 0.90 H281DRAFT_06291 shikimate dehydrogenase (EC 1.1.1.25) 0.99 H281DRAFT_04551 acetolactate synthase, large subunit
Paraburkholderia sabiae LMG 24235 0.81 QEN71_RS27130 shikimate dehydrogenase 0.97 QEN71_RS24225 acetolactate synthase 3 catalytic subunit 0.69 48
Ralstonia solanacearum PSI07 0.55 RPSI07_RS11300 shikimate dehydrogenase 0.82 RPSI07_RS14255 acetolactate synthase, large subunit, biosynthetic type
Ralstonia solanacearum IBSBF1503 0.54 RALBFv3_RS05945 shikimate dehydrogenase 0.82 RALBFv3_RS03050 acetolactate synthase 3 large subunit
Ralstonia solanacearum UW163 0.54 UW163_RS07680 shikimate dehydrogenase 0.82 UW163_RS10675 acetolactate synthase 3 large subunit
Ralstonia solanacearum GMI1000 0.54 RS_RS13890 shikimate dehydrogenase 0.81 RS_RS10420 acetolactate synthase 3 large subunit
Ralstonia sp. UNC404CL21Col 0.54 ABZR87_RS01605 shikimate dehydrogenase 0.81 ABZR87_RS14955 acetolactate synthase 3 catalytic subunit 0.52 47
Herbaspirillum seropedicae SmR1 0.51 HSERO_RS01990 shikimate 5-dehydrogenase 0.74 HSERO_RS08650 acetolactate synthase 0.74 14
Cupriavidus basilensis FW507-4G11 0.51 RR42_RS17645 shikimate dehydrogenase 0.80 RR42_RS05435 acetolactate synthase 3 catalytic subunit
Pseudomonas sp. S08-1 0.47 OH686_12485 Shikimate 5-dehydrogenase I alpha 0.58 OH686_08130 acetolactate synthase, large subunit, biosynthetic type low > 80
Pseudomonas putida KT2440 0.47 PP_0074 shikimate 5-dehydrogenase 0.57 PP_4680 acetohydroxybutanoate synthase / acetolactate synthase
Shewanella sp. ANA-3 0.47 Shewana3_0043 aroE shikimate 5-dehydrogenase (RefSeq) 0.57 Shewana3_2269 acetolactate synthase 3 catalytic subunit (RefSeq) low > 73
Pseudomonas syringae pv. syringae B728a 0.46 Psyr_0025 shikimate dehydrogenase 0.58 Psyr_0846 acetolactate synthase, large subunit 0.63 20
Pseudomonas syringae pv. syringae B728a ΔmexB 0.46 Psyr_0025 shikimate dehydrogenase 0.58 Psyr_0846 acetolactate synthase, large subunit 0.72 3
Pseudomonas sp. RS175 0.46 PFR28_04655 Shikimate dehydrogenase (NADP(+)) 0.57 PFR28_03699 Acetolactate synthase isozyme 3 large subunit
Pseudomonas fluorescens FW300-N2C3 0.45 AO356_11315 shikimate dehydrogenase 0.56 AO356_16170 acetolactate synthase 3 catalytic subunit 0.56 10
Pseudomonas simiae WCS417 0.45 PS417_00125 shikimate dehydrogenase 0.57 PS417_23810 acetolactate synthase 3 catalytic subunit
Pseudomonas fluorescens SBW25 0.45 PFLU_RS00120 shikimate dehydrogenase 0.57 PFLU_RS25650 acetolactate synthase 3 large subunit
Pseudomonas fluorescens FW300-N2E2 0.45 Pf6N2E2_4130 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.56 Pf6N2E2_5175 Acetolactate synthase large subunit (EC 2.2.1.6)
Pseudomonas fluorescens FW300-N1B4 0.45 Pf1N1B4_1906 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.57 Pf1N1B4_2878 Acetolactate synthase large subunit (EC 2.2.1.6) 0.63 4
Pseudomonas fluorescens SBW25-INTG 0.45 PFLU_RS00120 shikimate dehydrogenase 0.57 PFLU_RS25650 acetolactate synthase 3 large subunit
Marinobacter adhaerens HP15 0.45 HP15_3750 shikimate dehydrogenase 0.59 HP15_531 acetolactate synthase, large subunit, biosynthetic type
Vibrio cholerae E7946 ATCC 55056 0.45 CSW01_00280 shikimate dehydrogenase 0.56 CSW01_12565 acetolactate synthase 3 large subunit low > 62
Pseudomonas fluorescens GW456-L13 0.45 PfGW456L13_644 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.56 PfGW456L13_1538 Acetolactate synthase large subunit (EC 2.2.1.6) 0.80 10
Castellaniella sp019104865 MT123 0.44 ABCV34_RS11630 shikimate dehydrogenase 0.70 ABCV34_RS01210 acetolactate synthase 3 catalytic subunit low > 48
Pseudomonas stutzeri RCH2 0.44 Psest_0029 shikimate 5-dehydrogenase 0.58 Psest_1036 acetolactate synthase, large subunit, biosynthetic type
Shewanella oneidensis MR-1 0.44 SO0040 aroE shikimate 5-dehydrogenase (NCBI ptt file) 0.57 SO2279 ilvI acetolactate synthase III, large subunit (NCBI ptt file) low > 76
Pseudomonas fluorescens FW300-N2E3 0.44 AO353_10670 shikimate dehydrogenase 0.57 AO353_14495 acetolactate synthase 3 catalytic subunit 0.79 3
Shewanella amazonensis SB2B 0.41 Sama_0052 shikimate dehydrogenase (RefSeq) 0.56 Sama_2018 acetolactate synthase 3 catalytic subunit (RefSeq) low > 62
Pantoea sp. MT58 0.40 IAI47_02315 shikimate dehydrogenase 0.55 IAI47_15990 acetolactate synthase 3 large subunit
Shewanella loihica PV-4 0.40 Shew_3727 shikimate 5-dehydrogenase (RefSeq) 0.56 Shew_1776 acetolactate synthase 3 catalytic subunit (RefSeq) low > 60
Escherichia coli HS(pFamp)R (ATCC 700891) 0.39 OHPLBJKB_00422 Shikimate dehydrogenase (NADP(+)) 0.55 OHPLBJKB_03581 Acetolactate synthase isozyme 3 large subunit low > 73
Escherichia coli BW25113 0.39 b3281 aroE dehydroshikimate reductase, NAD(P)-binding (NCBI) 0.55 b0077 ilvI acetolactate synthase III large subunit (NCBI) low > 76
Escherichia coli BL21 0.39 ECD_03132 dehydroshikimate reductase, NAD(P)-binding 0.55 ECD_00079 acetolactate synthase 3 large subunit low > 61
Escherichia coli ECRC62 0.39 BNILDI_02165 aroE shikimate dehydrogenase 0.55 BNILDI_08565 ilvI acetolactate synthase 3 large subunit low > 75
Escherichia coli ECOR27 0.39 NOLOHH_09355 aroE shikimate dehydrogenase 0.55 NOLOHH_03045 ilvI acetolactate synthase 3 large subunit low > 75
Escherichia coli ECOR38 0.39 HEPCGN_16385 aroE shikimate dehydrogenase 0.55 HEPCGN_08680 ilvI acetolactate synthase 3 large subunit low > 87
Escherichia coli ECRC100 0.38 OKFHMN_17565 aroE shikimate dehydrogenase 0.55 OKFHMN_10700 ilvI acetolactate synthase 3 large subunit low > 80
Escherichia coli ECRC99 0.38 KEDOAH_10585 aroE shikimate dehydrogenase 0.55 KEDOAH_17455 ilvI acetolactate synthase 3 large subunit
Escherichia coli ECRC101 0.38 MCAODC_08085 aroE shikimate dehydrogenase 0.55 MCAODC_01215 ilvI acetolactate synthase 3 large subunit low > 87
Escherichia coli ECRC98 0.38 JDDGAC_21185 aroE shikimate dehydrogenase 0.55 JDDGAC_14295 ilvI acetolactate synthase 3 large subunit low > 86
Escherichia coli ECRC102 0.38 NIAGMN_15325 aroE shikimate dehydrogenase 0.55 NIAGMN_08550 ilvI acetolactate synthase 3 large subunit
Acidovorax sp. GW101-3H11 0.38 Ac3H11_4044 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.72 Ac3H11_525 Acetolactate synthase large subunit (EC 2.2.1.6) 0.83 26
Escherichia coli Nissle 1917 0.38 ECOLIN_RS18840 shikimate dehydrogenase 0.55 ECOLIN_RS00415 acetolactate synthase 3 large subunit low > 55
Escherichia fergusonii Becca 0.38 EFB2_00542 Shikimate dehydrogenase (NADP(+)) 0.55 EFB2_03969 Acetolactate synthase isozyme 3 large subunit low > 86
Enterobacter asburiae PDN3 0.37 EX28DRAFT_0046 shikimate dehydrogenase 0.55 EX28DRAFT_3673 acetolactate synthase, large subunit (EC 2.2.1.6) low > 76
Serratia liquefaciens MT49 0.37 IAI46_23240 shikimate dehydrogenase 0.56 IAI46_03375 acetolactate synthase 3 large subunit low > 86
Erwinia tracheiphila SCR3 0.37 LU632_RS22445 aroE shikimate dehydrogenase 0.57 LU632_RS02885 ilvI acetolactate synthase 3 large subunit low > 74
Klebsiella michiganensis M5al 0.36 BWI76_RS25645 shikimate dehydrogenase 0.55 BWI76_RS04695 acetolactate synthase 3 large subunit low > 92
Enterobacter sp. TBS_079 0.36 MPMX20_04189 Shikimate dehydrogenase (NADP(+)) 0.55 MPMX20_00771 Acetolactate synthase isozyme 3 large subunit low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.36 GFF2397 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.54 GFF161 Acetolactate synthase large subunit (EC 2.2.1.6) low > 78
Variovorax sp. SCN45 0.35 GFF4456 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.73 GFF1158 Acetolactate synthase large subunit (EC 2.2.1.6)
Acinetobacter radioresistens SK82 0.35 MPMX26_02748 Shikimate dehydrogenase (NADP(+)) 0.56 MPMX26_00472 Acetolactate synthase isozyme 3 large subunit 0.75 29
Dickeya dadantii 3937 0.35 DDA3937_RS19100 shikimate dehydrogenase 0.56 DDA3937_RS18105 acetolactate synthase 3 large subunit
Alteromonas macleodii MIT1002 0.35 MIT1002_00029 Shikimate dehydrogenase 0.54 MIT1002_00503 Acetolactate synthase isozyme 3 large subunit
Dickeya dianthicola ME23 0.35 DZA65_RS20315 shikimate dehydrogenase 0.56 DZA65_RS19185 acetolactate synthase 3 large subunit
Dickeya dianthicola 67-19 0.35 HGI48_RS19190 shikimate dehydrogenase 0.56 HGI48_RS18040 acetolactate synthase 3 large subunit
Variovorax sp. OAS795 0.34 ABID97_RS06300 shikimate dehydrogenase 0.72 ABID97_RS14885 acetolactate synthase 3 catalytic subunit
Pectobacterium carotovorum WPP14 0.33 HER17_RS02250 shikimate dehydrogenase 0.56 HER17_RS03095 acetolactate synthase 3 large subunit low > 75
Xanthomonas campestris pv. campestris strain 8004 0.30 Xcc-8004.5020.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.35 Xcc-8004.1059.1 Acetolactate synthase large subunit (EC 2.2.1.6) 0.82 25
Lysobacter sp. OAE881 0.29 ABIE51_RS01815 shikimate dehydrogenase 0.39 ABIE51_RS17550 acetolactate synthase 2 catalytic subunit 0.71 20
Methanococcus maripaludis S2 0.21 MMP_RS04855 shikimate dehydrogenase 0.39 MMP_RS03415 acetolactate synthase large subunit
Methanococcus maripaludis JJ 0.21 MMJJ_RS00280 shikimate dehydrogenase 0.39 MMJJ_RS01650 acetolactate synthase large subunit
Rhodopseudomonas palustris CGA009 0.21 TX73_022410 shikimate dehydrogenase 0.52 TX73_010465 acetolactate synthase 3 large subunit
Sinorhizobium meliloti 1021 0.20 SMc02791 shikimate 5-dehydrogenase 0.53 SMc01431 acetolactate synthase 3 catalytic subunit
Desulfovibrio vulgaris Hildenborough JW710 0.20 DVU0115 aroE shikimate 5-dehydrogenase (TIGR) 0.51 DVU1376 ilvB-2 acetolactate synthase, large subunit, biosynthetic type (TIGR)
Synechococcus elongatus PCC 7942 0.20 Synpcc7942_2467 aroE shikimate 5-dehydrogenase 0.47 Synpcc7942_0139 ilvB acetolactate synthase 3 catalytic subunit
Desulfovibrio vulgaris Miyazaki F 0.20 DvMF_1962 shikimate 5-dehydrogenase (RefSeq) 0.50 DvMF_0153 acetolactate synthase, large subunit, biosynthetic type (RefSeq)
Phaeobacter inhibens DSM 17395 0.19 PGA1_c35150 shikimate dehydrogenase AroE 0.49 PGA1_c20210 acetolactate synthase isozyme 3 large subunit
Rhodospirillum rubrum S1H 0.19 Rru_A3613 Quinate/Shikimate 5-dehydrogenase (NCBI) 0.53 Rru_A0467 Acetolactate synthase, large subunit, biosynthetic type (NCBI)
Rhizobium sp. OAE497 0.19 ABIE40_RS19250 shikimate dehydrogenase 0.54 ABIE40_RS11495 acetolactate synthase 3 large subunit
Azospirillum sp. SherDot2 0.19 MPMX19_02560 Shikimate dehydrogenase (NADP(+)) 0.54 MPMX19_01776 Acetolactate synthase isozyme 3 large subunit
Bosea sp. OAE506 0.18 ABIE41_RS04650 shikimate dehydrogenase 0.52 ABIE41_RS12890 acetolactate synthase 3 large subunit
Azospirillum brasilense Sp245 0.18 AZOBR_RS01765 shikimate 5-dehydrogenase 0.55 AZOBR_RS06560 acetolactate synthase
Caulobacter crescentus NA1000 0.17 CCNA_00003 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.55 CCNA_02185 acetolactate synthase large subunit 0.90 23
Caulobacter crescentus NA1000 Δfur 0.17 CCNA_00003 shikimate 5-dehydrogenase 0.55 CCNA_02185 acetolactate synthase large subunit low > 67
Parabacteroides merdae CL09T00C40 0.15 HMPREF1078_RS14200 shikimate dehydrogenase 0.37 HMPREF1078_RS16690 biosynthetic-type acetolactate synthase large subunit 0.87 60
Bacteroides stercoris CC31F 0.15 HMPREF1181_RS06320 shikimate dehydrogenase 0.37 HMPREF1181_RS08330 biosynthetic-type acetolactate synthase large subunit 0.79 36
Mucilaginibacter yixingensis YX-36 DSM 26809 0.15 ABZR88_RS20055 shikimate dehydrogenase 0.37 ABZR88_RS11580 biosynthetic-type acetolactate synthase large subunit
Phocaeicola vulgatus CL09T03C04 0.14 HMPREF1058_RS16750 shikimate dehydrogenase 0.36 HMPREF1058_RS16820 biosynthetic-type acetolactate synthase large subunit low > 67
Phocaeicola dorei CL03T12C01 0.14 ABI39_RS12665 shikimate dehydrogenase 0.36 ABI39_RS12720 biosynthetic-type acetolactate synthase large subunit 0.83 15
Echinicola vietnamensis KMM 6221, DSM 17526 0.14 Echvi_1145 Shikimate 5-dehydrogenase 0.38 Echvi_2056 acetolactate synthase, large subunit, biosynthetic type
Pontibacter actiniarum KMM 6156, DSM 19842 0.14 CA264_19075 shikimate dehydrogenase 0.36 CA264_06930 acetolactate synthase, large subunit, biosynthetic type
Magnetospirillum magneticum AMB-1 0.14 AMB_RS23010 shikimate dehydrogenase 0.54 AMB_RS17740 acetolactate synthase 3 large subunit
Pedobacter sp. GW460-11-11-14-LB5 0.13 CA265_RS19745 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.36 CA265_RS15805 acetolactate synthase, large subunit, biosynthetic type
Bacteroides ovatus ATCC 8483 0.13 BACOVA_05065 putative shikimate dehydrogenase 0.36 BACOVA_03303 acetolactate synthase, large subunit, biosynthetic type
Bacteroides thetaiotaomicron VPI-5482 0.13 BT4215 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.37 BT2077 acetolactate synthase large subunit (NCBI ptt file)
Mycobacterium tuberculosis H37Rv 0.11 Rv2552c Probable shikimate 5-dehydrogenase AroE (5-dehydroshikimate reductase) 0.44 Rv3003c Acetolactate synthase (large subunit) IlvB1 (acetohydroxy-acid synthase)

Not shown: 1 genomes with orthologs for BPHYT_RS16975 only; 8 genomes with orthologs for BPHYT_RS06545 only