Conservation of cofitness between Sama_0337 and Sama_2891 in Shewanella amazonensis SB2B

94 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella amazonensis SB2B 1.0 Sama_0337 isopropylmalate isomerase large subunit (RefSeq) 1.0 Sama_2891 sulfate adenylyltransferase subunit 2 (RefSeq) 0.94 19
Shewanella sp. ANA-3 0.86 Shewana3_3759 isopropylmalate isomerase large subunit (RefSeq) 0.82 Shewana3_0863 sulfate adenylyltransferase subunit 2 (RefSeq) 0.90 49
Shewanella loihica PV-4 0.86 Shew_3470 isopropylmalate isomerase large subunit (RefSeq) 0.82 Shew_1422 sulfate adenylyltransferase subunit 2 (RefSeq) low > 60
Shewanella oneidensis MR-1 0.85 SO4234 leuC 3-isopropylmalate dehydratase, large subunit (NCBI ptt file) 0.82 SO3727 cysD sulfate adenylyltransferase, subunit 2 (NCBI ptt file) 0.96 22
Escherichia fergusonii Becca 0.73 EFB2_03973 3-isopropylmalate dehydratase large subunit 0.79 EFB2_01158 Sulfate adenylyltransferase subunit 2 low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.73 OHPLBJKB_03585 3-isopropylmalate dehydratase large subunit 0.79 OHPLBJKB_00981 Sulfate adenylyltransferase subunit 2 low > 73
Escherichia coli ECOR38 0.73 HEPCGN_08705 leuC1 3-isopropylmalate dehydratase large subunit 1 0.79 HEPCGN_19620 cysD sulfate adenylyltransferase subunit CysD 0.97 30
Escherichia coli ECOR27 0.73 NOLOHH_03070 leuC1 3-isopropylmalate dehydratase large subunit 1 0.79 NOLOHH_12255 cysD sulfate adenylyltransferase subunit CysD 0.91 45
Escherichia coli Nissle 1917 0.73 ECOLIN_RS00390 3-isopropylmalate dehydratase large subunit 0.80 ECOLIN_RS15385 sulfate adenylyltransferase subunit CysD low > 55
Escherichia coli ECRC62 0.73 BNILDI_08540 leuC1 3-isopropylmalate dehydratase large subunit 1 0.79 BNILDI_10805 cysD sulfate adenylyltransferase subunit CysD 0.99 10
Escherichia coli BL21 0.73 ECD_00074 3-isopropylmalate dehydratase large subunit 0.79 ECD_02602 sulfate adenylyltransferase, subunit 2 low > 61
Escherichia coli BW25113 0.73 b0072 leuC isopropylmalate isomerase large subunit (NCBI) 0.79 b2752 cysD sulfate adenylyltransferase subunit 2 (NCBI) 0.88 51
Escherichia coli ECRC99 0.72 KEDOAH_17430 leuC1 3-isopropylmalate dehydratase large subunit 1 0.79 KEDOAH_07700 cysD sulfate adenylyltransferase subunit CysD
Escherichia coli ECRC98 0.72 JDDGAC_14320 leuC1 3-isopropylmalate dehydratase large subunit 1 0.79 JDDGAC_24105 cysD sulfate adenylyltransferase subunit CysD low > 86
Escherichia coli ECRC100 0.72 OKFHMN_10725 leuC1 3-isopropylmalate dehydratase large subunit 1 0.79 OKFHMN_20440 cysD sulfate adenylyltransferase subunit CysD 0.98 14
Escherichia coli ECRC102 0.72 NIAGMN_08575 leuC1 3-isopropylmalate dehydratase large subunit 1 0.79 NIAGMN_18210 cysD sulfate adenylyltransferase subunit CysD
Escherichia coli ECRC101 0.72 MCAODC_01240 leuC1 3-isopropylmalate dehydratase large subunit 1 0.79 MCAODC_10965 cysD sulfate adenylyltransferase subunit CysD 0.97 6
Klebsiella michiganensis M5al 0.72 BWI76_RS04670 3-isopropylmalate dehydratase large subunit 0.80 BWI76_RS22700 sulfate adenylyltransferase subunit 2 0.58 80
Enterobacter asburiae PDN3 0.72 EX28DRAFT_3668 3-isopropylmalate dehydratase, large subunit 0.80 EX28DRAFT_2848 sulfate adenylyltransferase, small subunit 0.82 24
Pantoea sp. MT58 0.72 IAI47_16010 3-isopropylmalate dehydratase large subunit 0.78 IAI47_04180 sulfate adenylyltransferase subunit CysD 0.81 62
Enterobacter sp. TBS_079 0.72 MPMX20_00767 3-isopropylmalate dehydratase large subunit 1 0.80 MPMX20_03638 Sulfate adenylyltransferase subunit 2 0.56 85
Rahnella sp. WP5 0.72 EX31_RS03690 3-isopropylmalate dehydratase large subunit 0.80 EX31_RS07880 sulfate adenylyltransferase subunit CysD 0.94 50
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.72 GFF166 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.79 GFF4800 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) low > 78
Dickeya dadantii 3937 0.71 DDA3937_RS18125 3-isopropylmalate dehydratase large subunit 0.79 DDA3937_RS16925 sulfate adenylyltransferase subunit CysD low > 74
Serratia liquefaciens MT49 0.71 IAI46_03345 3-isopropylmalate dehydratase large subunit 0.80 IAI46_03715 sulfate adenylyltransferase subunit CysD low > 86
Dickeya dianthicola ME23 0.70 DZA65_RS19210 3-isopropylmalate dehydratase large subunit 0.79 DZA65_RS18070 sulfate adenylyltransferase subunit CysD 0.70 42
Vibrio cholerae E7946 ATCC 55056 0.70 CSW01_12605 3-isopropylmalate dehydratase large subunit 0.84 CSW01_12960 sulfate adenylyltransferase subunit CysD low > 62
Dickeya dianthicola 67-19 0.70 HGI48_RS18065 3-isopropylmalate dehydratase large subunit 0.79 HGI48_RS16995 sulfate adenylyltransferase subunit CysD 0.67 70
Pectobacterium carotovorum WPP14 0.70 HER17_RS03075 3-isopropylmalate dehydratase large subunit 0.79 HER17_RS04285 sulfate adenylyltransferase subunit CysD 0.88 68
Erwinia tracheiphila SCR3 0.68 LU632_RS02870 leuC 3-isopropylmalate dehydratase large subunit 0.76 LU632_RS06425 cysD sulfate adenylyltransferase subunit CysD low > 74
Alteromonas macleodii MIT1002 0.66 MIT1002_00947 3-isopropylmalate dehydratase large subunit 0.82 MIT1002_01274 Sulfate adenylyltransferase subunit 2
Azospirillum sp. SherDot2 0.64 MPMX19_01998 3-isopropylmalate dehydratase large subunit 0.74 MPMX19_06719 Sulfate adenylyltransferase subunit 2 low > 112
Rhodospirillum rubrum S1H 0.63 Rru_A1189 3-isopropylmalate dehydratase large subunit region (NCBI) 0.69 Rru_A2289 Sulfate adenylyltransferase, small subunit (NCBI)
Kangiella aquimarina DSM 16071 0.63 B158DRAFT_1319 3-isopropylmalate dehydratase, large subunit 0.79 B158DRAFT_2360 sulfate adenylyltransferase, small subunit low > 40
Azospirillum brasilense Sp245 0.62 AZOBR_RS03545 isopropylmalate isomerase 0.67 AZOBR_RS33775 sulfate adenylyltransferase subunit 2 low > 97
Sinorhizobium meliloti 1021 0.61 SMc03823 isopropylmalate isomerase large subunit 0.70 SMc00091 sulfate adenylyltransferase 0.93 28
Rhodopseudomonas palustris CGA009 0.61 TX73_001245 3-isopropylmalate dehydratase large subunit 0.32 TX73_003885 sulfate adenylyltransferase subunit 2
Castellaniella sp019104865 MT123 0.61 ABCV34_RS04290 3-isopropylmalate dehydratase large subunit 0.45 ABCV34_RS14115 sulfate adenylyltransferase subunit CysD 0.50 14
Magnetospirillum magneticum AMB-1 0.61 AMB_RS20560 3-isopropylmalate dehydratase large subunit 0.38 AMB_RS11195 sulfate adenylyltransferase subunit 2
Agrobacterium fabrum C58 0.61 Atu2709 3-isopropylmalate dehydratase, large subunit 0.67 Atu0817 sulfate adenylate transferase, subunit 2 0.56 86
Rhizobium sp. OAE497 0.60 ABIE40_RS18380 3-isopropylmalate dehydratase large subunit 0.68 ABIE40_RS04470 sulfate adenylyltransferase subunit CysD 0.85 75
Cupriavidus basilensis FW507-4G11 0.60 RR42_RS14400 isopropylmalate isomerase 0.41 RR42_RS16255 sulfate adenylyltransferase 0.86 7
Pseudomonas fluorescens FW300-N1B4 0.60 Pf1N1B4_15 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.76 Pf1N1B4_1058 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4)
Pseudomonas sp. RS175 0.60 PFR28_02824 3-isopropylmalate dehydratase large subunit 0.78 PFR28_00193 Sulfate adenylyltransferase subunit 2 low > 88
Xanthomonas campestris pv. campestris strain 8004 0.60 Xcc-8004.1049.1 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.71 Xcc-8004.1259.1 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) low > 74
Pseudomonas syringae pv. syringae B728a ΔmexB 0.60 Psyr_1983 3-isopropylmalate dehydratase, large subunit 0.78 Psyr_4128 sulfate adenylyltransferase subunit 2 0.86 21
Pseudomonas syringae pv. syringae B728a 0.60 Psyr_1983 3-isopropylmalate dehydratase, large subunit 0.78 Psyr_4128 sulfate adenylyltransferase subunit 2 0.76 32
Pseudomonas putida KT2440 0.60 PP_1985 3-isopropylmalate dehydratase large subunit 0.78 PP_1303 Sulfate adenylyltransferase subunit 2 0.52 52
Herbaspirillum seropedicae SmR1 0.59 HSERO_RS16515 isopropylmalate isomerase 0.45 HSERO_RS15565 sulfate adenylyltransferase subunit 2 0.90 19
Pseudomonas stutzeri RCH2 0.59 Psest_2591 3-isopropylmalate dehydratase, large subunit 0.77 Psest_3294 sulfate adenylyltransferase, small subunit
Pseudomonas fluorescens FW300-N2C3 0.59 AO356_21400 isopropylmalate isomerase 0.78 AO356_16665 sulfate adenylyltransferase 0.66 54
Pseudomonas fluorescens GW456-L13 0.59 PfGW456L13_3948 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.77 PfGW456L13_4993 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) 0.75 60
Pseudomonas fluorescens FW300-N2E3 0.59 AO353_20620 isopropylmalate isomerase 0.78 AO353_05080 sulfate adenylyltransferase 0.70 51
Ralstonia sp. UNC404CL21Col 0.59 ABZR87_RS14540 3-isopropylmalate dehydratase large subunit 0.43 ABZR87_RS00195 sulfate adenylyltransferase subunit CysD 0.71 35
Mycobacterium tuberculosis H37Rv 0.59 Rv2988c Probable 3-isopropylmalate dehydratase (large subunit) LeuC (isopropylmalate isomerase) (alpha-IPM isomerase) (IPMI) 0.46 Rv1285 Probable sulfate adenylyltransferase subunit 2 CysD
Pseudomonas fluorescens FW300-N2E2 0.59 Pf6N2E2_63 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.78 Pf6N2E2_5257 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) 0.53 48
Pseudomonas simiae WCS417 0.59 PS417_18600 isopropylmalate isomerase 0.77 PS417_03715 sulfate adenylyltransferase subunit 2
Ralstonia solanacearum GMI1000 0.59 RS_RS10000 3-isopropylmalate dehydratase large subunit 0.43 RS_RS12155 sulfate adenylyltransferase subunit CysD low > 80
Paraburkholderia sabiae LMG 24235 0.59 QEN71_RS17605 3-isopropylmalate dehydratase large subunit 0.42 QEN71_RS25240 sulfate adenylyltransferase subunit CysD 0.81 27
Bosea sp. OAE506 0.59 ABIE41_RS11660 3-isopropylmalate dehydratase large subunit 0.68 ABIE41_RS15370 sulfate adenylyltransferase subunit CysD
Marinobacter adhaerens HP15 0.59 HP15_1834 protein containing 3-isopropylmalate dehydratase, large subunit region domain 0.81 HP15_2462 sulfate adenylyltransferase, small subunit 0.88 14
Ralstonia solanacearum UW163 0.59 UW163_RS11105 3-isopropylmalate dehydratase large subunit 0.43 UW163_RS09085 sulfate adenylyltransferase subunit CysD
Ralstonia solanacearum IBSBF1503 0.59 RALBFv3_RS02620 3-isopropylmalate dehydratase large subunit 0.43 RALBFv3_RS04585 sulfate adenylyltransferase subunit CysD
Pseudomonas fluorescens SBW25-INTG 0.59 PFLU_RS20580 3-isopropylmalate dehydratase large subunit 0.77 PFLU_RS03765 sulfate adenylyltransferase subunit CysD low > 109
Pseudomonas fluorescens SBW25 0.59 PFLU_RS20580 3-isopropylmalate dehydratase large subunit 0.77 PFLU_RS03765 sulfate adenylyltransferase subunit CysD low > 109
Burkholderia phytofirmans PsJN 0.59 BPHYT_RS33915 isopropylmalate isomerase 0.42 BPHYT_RS04740 sulfate adenylyltransferase subunit 2 0.78 48
Paraburkholderia bryophila 376MFSha3.1 0.59 H281DRAFT_06075 3-isopropylmalate dehydratase, large subunit 0.41 H281DRAFT_00117 sulfate adenylyltransferase subunit 2 0.61 17
Hydrogenophaga sp. GW460-11-11-14-LB1 0.59 GFF3363 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.42 GFF4290 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) 0.82 12
Ralstonia solanacearum PSI07 0.59 RPSI07_RS14695 3-isopropylmalate dehydratase large subunit 0.43 RPSI07_RS12790 sulfate adenylyltransferase subunit CysD low > 81
Pseudomonas sp. S08-1 0.59 OH686_04480 3-isopropylmalate dehydratase large subunit 0.79 OH686_08450 Sulfate adenylyltransferase subunit 2
Acinetobacter radioresistens SK82 0.58 MPMX26_00345 3-isopropylmalate dehydratase large subunit 0.81 MPMX26_02326 Sulfate adenylyltransferase subunit 2 low > 36
Acidovorax sp. GW101-3H11 0.58 Ac3H11_1525 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.41 Ac3H11_574 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) 0.86 23
Paraburkholderia graminis OAS925 0.58 ABIE53_004801 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit 0.41 ABIE53_001229 sulfate adenylyltransferase subunit 2 0.90 10
Variovorax sp. OAS795 0.58 ABID97_RS08465 3-isopropylmalate dehydratase large subunit 0.40 ABID97_RS15365 sulfate adenylyltransferase subunit CysD
Variovorax sp. SCN45 0.58 GFF3890 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.40 GFF1203 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) low > 127
Dechlorosoma suillum PS 0.58 Dsui_3201 3-isopropylmalate dehydratase, large subunit 0.44 Dsui_1983 sulfate adenylyltransferase, small subunit
Caulobacter crescentus NA1000 Δfur 0.57 CCNA_00196 3-isopropylmalate dehydratase large subunit 0.74 CCNA_01550 sulfate adenylyltransferase subunit 2 low > 67
Caulobacter crescentus NA1000 0.57 CCNA_00196 3-isopropylmalate dehydratase large subunit 0.74 CCNA_01550 sulfate adenylyltransferase subunit 2 0.88 52
Pontibacter actiniarum KMM 6156, DSM 19842 0.56 CA264_09435 3-isopropylmalate dehydratase large subunit 0.43 CA264_02545 sulfate adenylyltransferase small subunit low > 74
Sphingomonas koreensis DSMZ 15582 0.55 Ga0059261_4223 3-isopropylmalate dehydratase, large subunit 0.66 Ga0059261_4042 sulfate adenylyltransferase, small subunit 0.89 58
Mucilaginibacter yixingensis YX-36 DSM 26809 0.54 ABZR88_RS11595 3-isopropylmalate dehydratase large subunit 0.46 ABZR88_RS04940 sulfate adenylyltransferase subunit CysD
Pedobacter sp. GW460-11-11-14-LB5 0.54 CA265_RS15830 3-isopropylmalate dehydratase large subunit 0.46 CA265_RS04115 sulfate adenylyltransferase 0.92 22
Rhodanobacter denitrificans FW104-10B01 0.52 LRK54_RS07375 3-isopropylmalate dehydratase large subunit 0.71 LRK54_RS05520 sulfate adenylyltransferase subunit CysD low > 59
Rhodanobacter denitrificans MT42 0.52 LRK55_RS07105 3-isopropylmalate dehydratase large subunit 0.71 LRK55_RS05290 sulfate adenylyltransferase subunit CysD
Echinicola vietnamensis KMM 6221, DSM 17526 0.51 Echvi_2059 3-isopropylmalate dehydratase, large subunit 0.43 Echvi_0983 sulfate adenylyltransferase, small subunit
Lysobacter sp. OAE881 0.51 ABIE51_RS17575 3-isopropylmalate dehydratase large subunit 0.71 ABIE51_RS15820 sulfate adenylyltransferase subunit CysD 0.92 34
Brevundimonas sp. GW460-12-10-14-LB2 0.51 A4249_RS10005 3-isopropylmalate dehydratase large subunit 0.73 A4249_RS15305 sulfate adenylyltransferase subunit CysD 0.99 40
Dyella japonica UNC79MFTsu3.2 0.51 ABZR86_RS15960 3-isopropylmalate dehydratase large subunit 0.67 ABZR86_RS18865 sulfate adenylyltransferase subunit CysD low > 74
Bacteroides ovatus ATCC 8483 0.51 BACOVA_04603 3-isopropylmalate dehydratase, large subunit 0.69 BACOVA_01768 putative sulfate adenylyltransferase subunit 2 low > 94
Bacteroides stercoris CC31F 0.50 HMPREF1181_RS14145 3-isopropylmalate dehydratase large subunit 0.69 HMPREF1181_RS04305 sulfate adenylyltransferase subunit CysD low > 56
Bacteroides thetaiotaomicron VPI-5482 0.50 BT1860 3-isopropylmalate dehydratase large subunit (NCBI ptt file) 0.69 BT0414 sulfate adenylyltransferase subunit 2 (NCBI ptt file) low > 81
Rhodanobacter sp. FW510-T8 0.49 OKGIIK_13585 leuC 3-isopropylmalate dehydratase large subunit 0.72 OKGIIK_01295 cysD sulfate adenylyltransferase subunit CysD low > 52
Parabacteroides merdae CL09T00C40 0.49 HMPREF1078_RS16660 3-isopropylmalate dehydratase large subunit 0.69 HMPREF1078_RS01705 sulfate adenylyltransferase subunit CysD low > 61
Phocaeicola vulgatus CL09T03C04 0.49 HMPREF1058_RS14550 3-isopropylmalate dehydratase large subunit 0.68 HMPREF1058_RS02945 sulfate adenylyltransferase subunit CysD low > 67
Phocaeicola dorei CL03T12C01 0.49 ABI39_RS10200 3-isopropylmalate dehydratase large subunit 0.68 ABI39_RS02260 sulfate adenylyltransferase subunit CysD low > 72

Not shown: 8 genomes with orthologs for Sama_0337 only; 0 genomes with orthologs for Sama_2891 only