Conservation of cofitness between BT4003 and BT3757 in Bacteroides thetaiotaomicron VPI-5482

83 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Bacteroides thetaiotaomicron VPI-5482 1.0 BT4003 stationary-phase survival protein SurE (NCBI ptt file) 1.0 BT3757 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) 0.31 9
Bacteroides ovatus ATCC 8483 0.84 BACOVA_04822 5'/3'-nucleotidase SurE 0.92 BACOVA_03587 pyrroline-5-carboxylate reductase low > 94
Bacteroides stercoris CC31F 0.74 HMPREF1181_RS09175 5'/3'-nucleotidase SurE 0.78 HMPREF1181_RS03440 pyrroline-5-carboxylate reductase low > 56
Phocaeicola vulgatus CL09T03C04 0.64 HMPREF1058_RS14085 5'/3'-nucleotidase SurE 0.69 HMPREF1058_RS08830 pyrroline-5-carboxylate reductase low > 67
Phocaeicola dorei CL03T12C01 0.64 ABI39_RS09735 5'/3'-nucleotidase SurE 0.69 ABI39_RS02960 pyrroline-5-carboxylate reductase low > 72
Parabacteroides merdae CL09T00C40 0.50 HMPREF1078_RS04545 5'/3'-nucleotidase SurE 0.51 HMPREF1078_RS10620 pyrroline-5-carboxylate reductase low > 61
Echinicola vietnamensis KMM 6221, DSM 17526 0.44 Echvi_3388 5'/3'-nucleotidase SurE 0.34 Echvi_2479 pyrroline-5-carboxylate reductase low > 79
Pedobacter sp. GW460-11-11-14-LB5 0.44 CA265_RS16310 5'/3'-nucleotidase SurE 0.34 CA265_RS18505 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) low > 88
Pontibacter actiniarum KMM 6156, DSM 19842 0.44 CA264_12185 5'/3'-nucleotidase SurE 0.33 CA264_07730 pyrroline-5-carboxylate reductase low > 74
Mucilaginibacter yixingensis YX-36 DSM 26809 0.43 ABZR88_RS03555 5'/3'-nucleotidase SurE 0.39 ABZR88_RS09865 pyrroline-5-carboxylate reductase — —
Synechococcus elongatus PCC 7942 0.29 Synpcc7942_2063 surE stationary phase survival protein SurE 0.24 Synpcc7942_2058 proC pyrroline-5-carboxylate reductase — —
Vibrio cholerae E7946 ATCC 55056 0.29 CSW01_02820 5'-nucleotidase SurE 0.20 CSW01_02450 pyrroline-5-carboxylate reductase low > 62
Pseudomonas fluorescens SBW25 0.26 PFLU_RS06415 5'/3'-nucleotidase SurE 0.23 PFLU_RS28375 pyrroline-5-carboxylate reductase — —
Pseudomonas fluorescens SBW25-INTG 0.26 PFLU_RS06415 5'/3'-nucleotidase SurE 0.23 PFLU_RS28375 pyrroline-5-carboxylate reductase — —
Pseudomonas putida KT2440 0.26 PP_1620 5'(3')-nucleotidase and polyphosphatase 0.23 PP_5095 pyrroline-5-carboxylate reductase low > 96
Herbaspirillum seropedicae SmR1 0.26 HSERO_RS14845 stationary phase survival protein SurE 0.19 HSERO_RS18990 pyrroline-5-carboxylate reductase low > 78
Kangiella aquimarina DSM 16071 0.26 B158DRAFT_2296 3'-nucleotidase (EC 3.1.3.6)/5'-nucleotidase (EC 3.1.3.5)/exopolyphosphatase (EC 3.6.1.11) 0.23 B158DRAFT_0197 pyrroline-5-carboxylate reductase low > 40
Pseudomonas simiae WCS417 0.26 PS417_06350 stationary phase survival protein SurE 0.22 PS417_26730 pyrroline-5-carboxylate reductase low > 88
Rhodanobacter denitrificans FW104-10B01 0.26 LRK54_RS16650 5'/3'-nucleotidase SurE 0.16 LRK54_RS04260 pyrroline-5-carboxylate reductase low > 59
Dyella japonica UNC79MFTsu3.2 0.26 ABZR86_RS06595 5'/3'-nucleotidase SurE 0.19 ABZR86_RS10425 pyrroline-5-carboxylate reductase low > 74
Rhodanobacter denitrificans MT42 0.26 LRK55_RS16375 5'/3'-nucleotidase SurE 0.16 LRK55_RS04030 pyrroline-5-carboxylate reductase — —
Rhodanobacter sp. FW510-T8 0.25 OKGIIK_08115 surE 5'/3'-nucleotidase SurE 0.16 OKGIIK_11135 proC pyrroline-5-carboxylate reductase low > 52
Pseudomonas fluorescens FW300-N2E3 0.25 AO353_16600 stationary phase survival protein SurE 0.21 AO353_08165 pyrroline-5-carboxylate reductase low > 101
Pseudomonas sp. S08-1 0.25 OH686_18170 5'/3'-nucleotidase SurE 0.20 OH686_10980 pyrroline-5-carboxylate reductase low > 80
Sphingomonas koreensis DSMZ 15582 0.25 Ga0059261_0278 3'-nucleotidase (EC 3.1.3.6)/5'-nucleotidase (EC 3.1.3.5)/exopolyphosphatase (EC 3.6.1.11) 0.16 Ga0059261_3321 pyrroline-5-carboxylate reductase low > 68
Shewanella loihica PV-4 0.25 Shew_1210 stationary-phase survival protein SurE (RefSeq) 0.21 Shew_1136 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) low > 60
Pseudomonas syringae pv. syringae B728a 0.25 Psyr_1371 5'-nucleotidase / exopolyphosphatase / 3'-nucleotidase 0.21 Psyr_0476 pyrroline-5-carboxylate reductase — —
Shewanella oneidensis MR-1 0.25 SO3435 surE stationary-phase survival protein SurE (NCBI ptt file) 0.20 SO3354 proC pyrroline-5-carboxylate reductase (NCBI ptt file) 0.85 38
Pseudomonas syringae pv. syringae B728a ΔmexB 0.25 Psyr_1371 5'-nucleotidase / exopolyphosphatase / 3'-nucleotidase 0.21 Psyr_0476 pyrroline-5-carboxylate reductase low > 86
Paraburkholderia sabiae LMG 24235 0.25 QEN71_RS22255 5'/3'-nucleotidase SurE 0.18 QEN71_RS26600 pyrroline-5-carboxylate reductase low > 153
Serratia liquefaciens MT49 0.25 IAI46_03775 5'/3'-nucleotidase SurE 0.18 IAI46_21415 pyrroline-5-carboxylate reductase low > 86
Shewanella amazonensis SB2B 0.25 Sama_1041 surE stationary phase survival protein SurE (RefSeq) 0.20 Sama_2478 pyrroline-5-carboxylate reductase (RefSeq) 0.71 50
Shewanella sp. ANA-3 0.25 Shewana3_1121 surE stationary phase survival protein SurE (RefSeq) 0.19 Shewana3_1193 pyrroline-5-carboxylate reductase (RefSeq) 0.67 39
Xanthomonas campestris pv. campestris strain 8004 0.24 Xcc-8004.3131.1 hypothetical protein 0.14 Xcc-8004.1710.1 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) low > 74
Ralstonia sp. UNC404CL21Col 0.24 ABZR87_RS10860 5'/3'-nucleotidase SurE 0.19 ABZR87_RS01230 pyrroline-5-carboxylate reductase — —
Variovorax sp. SCN45 0.24 GFF2845 5'-nucleotidase SurE (EC 3.1.3.5) 0.17 GFF5553 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) — —
Burkholderia phytofirmans PsJN 0.24 BPHYT_RS09100 stationary phase survival protein SurE 0.19 BPHYT_RS03490 pyrroline-5-carboxylate reductase — —
Pseudomonas fluorescens GW456-L13 0.24 PfGW456L13_4678 5-nucleotidase SurE (EC 3.1.3.5) @ Exopolyphosphatase (EC 3.6.1.11) 0.23 PfGW456L13_1010 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) low > 87
Paraburkholderia graminis OAS925 0.24 ABIE53_002054 5'-nucleotidase 0.20 ABIE53_000840 pyrroline-5-carboxylate reductase low > 113
Desulfovibrio vulgaris Miyazaki F 0.24 DvMF_0021 stationary-phase survival protein SurE (RefSeq) 0.22 DvMF_3161 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) low > 51
Pseudomonas fluorescens FW300-N1B4 0.24 Pf1N1B4_3112 5-nucleotidase SurE (EC 3.1.3.5) @ Exopolyphosphatase (EC 3.6.1.11) 0.20 Pf1N1B4_2341 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) — —
Paraburkholderia bryophila 376MFSha3.1 0.24 H281DRAFT_00840 5'-nucleotidase /3'-nucleotidase /exopolyphosphatase 0.19 H281DRAFT_04679 pyrroline-5-carboxylate reductase low > 103
Ralstonia solanacearum PSI07 0.24 RPSI07_RS18155 5'/3'-nucleotidase SurE 0.18 RPSI07_RS11720 pyrroline-5-carboxylate reductase low > 81
Ralstonia solanacearum GMI1000 0.24 RS_RS06030 5'-nucleotidase SurE 0.18 RS_RS13440 pyrroline-5-carboxylate reductase — —
Erwinia tracheiphila SCR3 0.24 LU632_RS06465 surE 5'/3'-nucleotidase SurE 0.24 LU632_RS18995 proC pyrroline-5-carboxylate reductase low > 74
Rahnella sp. WP5 0.24 EX31_RS07840 5'/3'-nucleotidase SurE 0.15 EX31_RS02690 pyrroline-5-carboxylate reductase low > 89
Lysobacter sp. OAE881 0.24 ABIE51_RS06485 5'/3'-nucleotidase SurE 0.22 ABIE51_RS16065 pyrroline-5-carboxylate reductase low > 62
Desulfovibrio vulgaris Hildenborough JW710 0.23 DVU2142 surE stationary-phase survival protein SurE (TIGR) 0.21 DVU2332 proC pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) low > 55
Ralstonia solanacearum UW163 0.23 UW163_RS12685 5'/3'-nucleotidase SurE 0.18 UW163_RS08045 pyrroline-5-carboxylate reductase — —
Ralstonia solanacearum IBSBF1503 0.23 RALBFv3_RS15220 5'/3'-nucleotidase SurE 0.18 RALBFv3_RS05580 pyrroline-5-carboxylate reductase low > 76
Variovorax sp. OAS795 0.23 ABID97_RS10715 5'/3'-nucleotidase SurE 0.18 ABID97_RS01555 pyrroline-5-carboxylate reductase — —
Pseudomonas sp. RS175 0.23 PFR28_00424 '5'-nucleotidase SurE' transl_table=11 0.22 PFR28_04243 Pyrroline-5-carboxylate reductase — —
Agrobacterium fabrum C58 0.23 Atu1702 stationary-phase survival protein 0.12 Atu2209 pyrroline-5-carboxylate reductase low > 89
Sinorhizobium meliloti 1021 0.23 SMc02063 stationary phase survival protein SurE 0.14 SMc02677 pyrroline-5-carboxylate reductase — —
Pseudomonas fluorescens FW300-N2E2 0.23 Pf6N2E2_3040 5-nucleotidase SurE (EC 3.1.3.5) 0.21 Pf6N2E2_4600 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) — —
Cupriavidus basilensis FW507-4G11 0.23 RR42_RS13200 stationary phase survival protein SurE 0.17 RR42_RS17360 pyrroline-5-carboxylate reductase — —
Enterobacter asburiae PDN3 0.23 EX28DRAFT_2840 3'-nucleotidase (EC 3.1.3.6)/5'-nucleotidase (EC 3.1.3.5)/exopolyphosphatase (EC 3.6.1.11) 0.23 EX28DRAFT_2585 pyrroline-5-carboxylate reductase low > 76
Enterobacter sp. TBS_079 0.23 MPMX20_03630 5'/3'-nucleotidase SurE 0.23 MPMX20_00976 Pyrroline-5-carboxylate reductase low > 85
Pseudomonas stutzeri RCH2 0.23 Psest_2810 5'/3'-nucleotidase SurE 0.23 Psest_0283 pyrroline-5-carboxylate reductase — —
Castellaniella sp019104865 MT123 0.23 ABCV34_RS03030 5'/3'-nucleotidase SurE 0.19 ABCV34_RS03610 pyrroline-5-carboxylate reductase low > 48
Pantoea sp. MT58 0.23 IAI47_04220 5'/3'-nucleotidase SurE 0.21 IAI47_14945 pyrroline-5-carboxylate reductase 0.48 38
Phaeobacter inhibens DSM 17395 0.22 PGA1_c10770 5'-nucleotidase SurE 0.11 PGA1_c24700 pyrroline-5-carboxylate reductase ProC low > 62
Marinobacter adhaerens HP15 0.22 HP15_1279 stationary-phase survival protein SurE 0.21 HP15_287 pyrroline-5-carboxylate reductase — —
Pseudomonas fluorescens FW300-N2C3 0.22 AO356_05900 stationary phase survival protein SurE 0.22 AO356_13420 pyrroline-5-carboxylate reductase — —
Klebsiella michiganensis M5al 0.22 BWI76_RS22660 5'/3'-nucleotidase SurE 0.24 BWI76_RS06170 pyrroline-5-carboxylate reductase — —
Caulobacter crescentus NA1000 0.22 CCNA_02077 5'(3')-nucleotidase/polyphosphatase SurE 0.13 CCNA_00528 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) low > 66
Caulobacter crescentus NA1000 Δfur 0.22 CCNA_02077 5'(3')-nucleotidase/polyphosphatase SurE 0.13 CCNA_00528 pyrroline-5-carboxylate reductase low > 67
Escherichia coli ECRC101 0.22 MCAODC_11005 surE 5'/3'-nucleotidase SurE 0.24 MCAODC_27835 proC pyrroline-5-carboxylate reductase — —
Escherichia coli ECOR27 0.22 NOLOHH_12295 surE 5'/3'-nucleotidase SurE 0.24 NOLOHH_01535 proC pyrroline-5-carboxylate reductase low > 57
Escherichia fergusonii Becca 0.22 EFB2_01166 5'/3'-nucleotidase SurE 0.24 EFB2_03670 Pyrroline-5-carboxylate reductase low > 86
Escherichia coli ECRC101 0.22 OKFHMN_20480 surE 5'/3'-nucleotidase SurE 0.24 OKFHMN_08610 proC pyrroline-5-carboxylate reductase — —
Escherichia coli BW25113 0.22 b2744 surE acid phosphatase (NCBI) 0.24 b0386 proC pyrroline-5-carboxylate reductase (NCBI) low > 76
Escherichia coli ECRC99 0.22 KEDOAH_07660 surE 5'/3'-nucleotidase SurE 0.24 KEDOAH_19355 proC pyrroline-5-carboxylate reductase — —
Escherichia coli BL21 0.22 ECD_02594 broad specificity 5'(3')-nucleotidase and polyphosphatase 0.24 ECD_00333 pyrroline-5-carboxylate reductase, NAD(P)-binding low > 60
Escherichia coli ECRC98 0.22 JDDGAC_24145 surE 5'/3'-nucleotidase SurE 0.24 JDDGAC_12265 proC pyrroline-5-carboxylate reductase — —
Escherichia coli ECRC102 0.22 NIAGMN_18250 surE 5'/3'-nucleotidase SurE 0.24 NIAGMN_06665 proC pyrroline-5-carboxylate reductase — —
Escherichia coli Nissle 1917 0.22 ECOLIN_RS15345 5'/3'-nucleotidase SurE 0.24 ECOLIN_RS02345 pyrroline-5-carboxylate reductase low > 52
Escherichia coli HS(pFamp)R (ATCC 700891) 0.22 OHPLBJKB_00989 '5'/3'-nucleotidase SurE' transl_table=11 0.24 OHPLBJKB_03288 Pyrroline-5-carboxylate reductase low > 73
Escherichia coli ECRC62 0.22 BNILDI_10845 surE 5'/3'-nucleotidase SurE 0.24 BNILDI_22950 proC pyrroline-5-carboxylate reductase — —
Escherichia coli ECOR38 0.22 HEPCGN_19660 surE 5'/3'-nucleotidase SurE 0.24 HEPCGN_07250 proC pyrroline-5-carboxylate reductase low > 85
Rhizobium sp. OAE497 0.22 ABIE40_RS08480 5'/3'-nucleotidase SurE 0.14 ABIE40_RS13005 pyrroline-5-carboxylate reductase low > 107
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.21 GFF4792 5-nucleotidase SurE (EC 3.1.3.5) @ Exopolyphosphatase (EC 3.6.1.11) 0.24 GFF4283 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) low > 78
Rhodopseudomonas palustris CGA009 0.20 TX73_014710 5'/3'-nucleotidase SurE 0.12 TX73_022630 pyrroline-5-carboxylate reductase — —
Dinoroseobacter shibae DFL-12 0.19 Dshi_2136 stationary-phase survival protein SurE (RefSeq) 0.11 Dshi_2645 pyrroline-5-carboxylate reductase (RefSeq) — —

Not shown: 12 genomes with orthologs for BT4003 only; 6 genomes with orthologs for BT3757 only