Conservation of cofitness between b2892 and b2616 in Escherichia coli BW25113

90 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b2892 recJ ssDNA exonuclease, 5' --> 3'-specific (NCBI) 1.0 b2616 recN recombination and repair protein (NCBI) 0.45 10
Escherichia coli ECRC99 0.99 KEDOAH_08560 recJ single-stranded-DNA-specific exonuclease RecJ 0.99 KEDOAH_07075 recN DNA repair protein RecN — —
Escherichia coli ECRC101 0.99 MCAODC_10100 recJ single-stranded-DNA-specific exonuclease RecJ 0.99 MCAODC_11670 recN DNA repair protein RecN — —
Escherichia coli ECRC98 0.99 JDDGAC_23220 recJ single-stranded-DNA-specific exonuclease RecJ 0.99 JDDGAC_24810 recN DNA repair protein RecN — —
Escherichia coli ECRC102 0.99 NIAGMN_17345 recJ single-stranded-DNA-specific exonuclease RecJ 0.99 NIAGMN_18915 recN DNA repair protein RecN — —
Escherichia coli ECRC101 0.99 OKFHMN_19580 recJ single-stranded-DNA-specific exonuclease RecJ 0.99 OKFHMN_21145 recN DNA repair protein RecN — —
Escherichia fergusonii Becca 0.99 EFB2_01009 Single-stranded-DNA-specific exonuclease RecJ 0.99 EFB2_01277 DNA repair protein RecN low > 86
Escherichia coli ECOR27 0.99 NOLOHH_11505 recJ single-stranded-DNA-specific exonuclease RecJ 1.00 NOLOHH_12815 recN DNA repair protein RecN low > 57
Escherichia coli BL21 0.99 ECD_02724 ssDNA exonuclease, 5 1.00 ECD_02504 recombination and repair protein low > 60
Escherichia coli Nissle 1917 0.99 ECOLIN_RS16115 single-stranded-DNA-specific exonuclease RecJ 0.99 ECOLIN_RS14775 DNA repair protein RecN low > 52
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_00823 Single-stranded-DNA-specific exonuclease RecJ 1.00 OHPLBJKB_01091 DNA repair protein RecN low > 73
Escherichia coli ECRC62 0.99 BNILDI_10035 recJ single-stranded-DNA-specific exonuclease RecJ 1.00 BNILDI_11620 recN DNA repair protein RecN — —
Escherichia coli ECOR38 0.99 HEPCGN_18870 recJ single-stranded-DNA-specific exonuclease RecJ 0.99 HEPCGN_20265 recN DNA repair protein RecN low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.93 GFF2989 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) 0.92 GFF4162 DNA repair protein RecN 0.57 24
Enterobacter asburiae PDN3 0.90 EX28DRAFT_2943 single-stranded-DNA-specific exonuclease RecJ 0.86 EX28DRAFT_2719 DNA repair protein RecN low > 76
Klebsiella michiganensis M5al 0.89 BWI76_RS23805 ssDNA exonuclease RecJ 0.84 BWI76_RS21560 DNA repair protein RecN low > 92
Enterobacter sp. TBS_079 0.89 MPMX20_03751 Single-stranded-DNA-specific exonuclease RecJ 0.85 MPMX20_03486 DNA repair protein RecN low > 85
Serratia liquefaciens MT49 0.79 IAI46_20720 single-stranded-DNA-specific exonuclease RecJ 0.77 IAI46_19635 DNA repair protein RecN low > 86
Pantoea sp. MT58 0.77 IAI47_03830 single-stranded-DNA-specific exonuclease RecJ 0.77 IAI47_04810 DNA repair protein RecN low > 76
Dickeya dianthicola 67-19 0.77 HGI48_RS03450 single-stranded-DNA-specific exonuclease RecJ 0.72 HGI48_RS04320 DNA repair protein RecN low > 71
Dickeya dianthicola ME23 0.77 DZA65_RS03495 single-stranded-DNA-specific exonuclease RecJ 0.72 DZA65_RS04235 DNA repair protein RecN low > 75
Rahnella sp. WP5 0.76 EX31_RS13470 single-stranded-DNA-specific exonuclease RecJ 0.75 EX31_RS21760 DNA repair protein RecN 0.42 89
Dickeya dadantii 3937 0.76 DDA3937_RS03310 single-stranded-DNA-specific exonuclease RecJ 0.73 DDA3937_RS04325 DNA repair protein RecN 0.42 57
Erwinia tracheiphila SCR3 0.72 LU632_RS05985 recJ single-stranded-DNA-specific exonuclease RecJ 0.73 LU632_RS16985 recN DNA repair protein RecN low > 74
Pectobacterium carotovorum WPP14 0.72 HER17_RS17880 single-stranded-DNA-specific exonuclease RecJ 0.72 HER17_RS17420 DNA repair protein RecN low > 75
Vibrio cholerae E7946 ATCC 55056 0.64 CSW01_12240 single-stranded-DNA-specific exonuclease RecJ 0.53 CSW01_04395 DNA repair protein RecN low > 62
Shewanella sp. ANA-3 0.58 Shewana3_3329 single-stranded-DNA-specific exonuclease RecJ (RefSeq) 0.55 Shewana3_1104 recombination and repair protein (RefSeq) 0.64 39
Shewanella loihica PV-4 0.57 Shew_0772 single-stranded-DNA-specific exonuclease RecJ (RefSeq) 0.53 Shew_1196 recombination and repair protein (RefSeq) 0.59 18
Shewanella oneidensis MR-1 0.57 SO0952 recJ single-stranded-DNA-specific exonuclease RecJ (NCBI ptt file) 0.55 SO3462 recN DNA repair protein RecN (NCBI ptt file) 0.55 10
Pseudomonas syringae pv. syringae B728a ΔmexB 0.57 Psyr_1298 exonuclease RecJ 0.38 Psyr_4197 DNA replication and repair protein RecN low > 86
Pseudomonas syringae pv. syringae B728a 0.57 Psyr_1298 exonuclease RecJ 0.38 Psyr_4197 DNA replication and repair protein RecN 0.32 21
Pseudomonas simiae WCS417 0.57 PS417_22855 ssDNA exonuclease RecJ 0.39 PS417_24070 recombination and repair protein low > 88
Shewanella amazonensis SB2B 0.57 Sama_2737 single-stranded-DNA-specific exonuclease RecJ (RefSeq) 0.54 Sama_1026 recombination and repair protein (RefSeq) 0.77 4
Pseudomonas fluorescens SBW25 0.56 PFLU_RS24515 single-stranded-DNA-specific exonuclease RecJ 0.38 PFLU_RS25910 DNA repair protein RecN low > 109
Pseudomonas fluorescens SBW25-INTG 0.56 PFLU_RS24515 single-stranded-DNA-specific exonuclease RecJ 0.38 PFLU_RS25910 DNA repair protein RecN low > 109
Pseudomonas fluorescens FW300-N2C3 0.56 AO356_06345 single-stranded-DNA-specific exonuclease RecJ 0.38 AO356_07510 DNA repair protein RecN 0.26 27
Pseudomonas sp. S08-1 0.56 OH686_06955 single-stranded-DNA-specific exonuclease RecJ 0.39 OH686_17050 DNA repair protein RecN low > 80
Pseudomonas fluorescens FW300-N2E2 0.56 Pf6N2E2_3137 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) 0.39 Pf6N2E2_3370 DNA repair protein RecN 0.63 3
Pseudomonas fluorescens FW300-N1B4 0.56 Pf1N1B4_3020 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) 0.39 Pf1N1B4_1178 DNA repair protein RecN low > 87
Pseudomonas putida KT2440 0.55 PP_1477 ssDNA-specific exonuclease RecJ 0.37 PP_4729 factor used in recombination and DNA repair low > 96
Pseudomonas fluorescens GW456-L13 0.55 PfGW456L13_1730 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) 0.40 PfGW456L13_5106 DNA repair protein RecN 0.33 23
Pseudomonas sp. RS175 0.55 PFR28_00339 Single-stranded-DNA-specific exonuclease RecJ 0.39 PFR28_00071 DNA repair protein RecN low > 88
Pseudomonas fluorescens FW300-N2E3 0.55 AO353_04320 single-stranded-DNA-specific exonuclease RecJ 0.38 AO353_05660 DNA repair protein RecN 0.48 8
Alteromonas macleodii MIT1002 0.53 MIT1002_00788 Single-stranded-DNA-specific exonuclease RecJ 0.43 MIT1002_01443 Recombination protein N low > 70
Pseudomonas stutzeri RCH2 0.53 Psest_1544 single-stranded-DNA-specific exonuclease RecJ 0.38 Psest_0962 DNA repair protein RecN 0.38 10
Marinobacter adhaerens HP15 0.50 HP15_766 bacterial RecJ exonuclease 0.40 HP15_3084 DNA repair protein RecN 0.73 8
Kangiella aquimarina DSM 16071 0.49 B158DRAFT_2268 single-stranded-DNA-specific exonuclease RecJ 0.37 B158DRAFT_0601 DNA replication and repair protein RecN 0.67 13
Dyella japonica UNC79MFTsu3.2 0.44 ABZR86_RS02800 single-stranded-DNA-specific exonuclease RecJ 0.34 ABZR86_RS05665 DNA repair protein RecN low > 74
Dechlorosoma suillum PS 0.44 Dsui_2860 single-stranded-DNA-specific exonuclease RecJ 0.33 Dsui_3072 DNA repair protein RecN — —
Xanthomonas campestris pv. campestris strain 8004 0.43 Xcc-8004.2909.1 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) 0.30 Xcc-8004.3431.1 DNA repair protein RecN low > 74
Acinetobacter radioresistens SK82 0.42 MPMX26_02917 Single-stranded-DNA-specific exonuclease RecJ 0.29 MPMX26_00239 DNA repair protein RecN low > 36
Rhodanobacter sp. FW510-T8 0.41 OKGIIK_06995 recJ single-stranded-DNA-specific exonuclease RecJ 0.33 OKGIIK_07340 recN DNA repair protein RecN low > 52
Cupriavidus basilensis FW507-4G11 0.41 RR42_RS06090 single-stranded DNA exonuclease 0.35 RR42_RS05910 DNA repair protein 0.73 6
Herbaspirillum seropedicae SmR1 0.41 HSERO_RS13965 single-stranded DNA exonuclease 0.38 HSERO_RS03060 DNA repair protein 0.27 72
Ralstonia solanacearum GMI1000 0.41 RS_RS05550 single-stranded-DNA-specific exonuclease RecJ 0.35 RS_RS13275 DNA repair protein RecN low > 80
Acidovorax sp. GW101-3H11 0.41 Ac3H11_1746 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) 0.32 Ac3H11_3460 DNA repair protein RecN — —
Ralstonia solanacearum PSI07 0.41 RPSI07_RS18620 single-stranded-DNA-specific exonuclease RecJ 0.36 RPSI07_RS11890 DNA repair protein RecN low > 81
Ralstonia solanacearum UW163 0.41 UW163_RS12210 single-stranded-DNA-specific exonuclease RecJ 0.36 UW163_RS08210 DNA repair protein RecN — —
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS14740 single-stranded-DNA-specific exonuclease RecJ 0.36 RALBFv3_RS05415 DNA repair protein RecN low > 76
Rhodanobacter denitrificans FW104-10B01 0.41 LRK54_RS00315 single-stranded-DNA-specific exonuclease RecJ 0.33 LRK54_RS17960 DNA repair protein RecN low > 59
Paraburkholderia sabiae LMG 24235 0.41 QEN71_RS05835 single-stranded-DNA-specific exonuclease RecJ 0.37 QEN71_RS26535 DNA repair protein RecN low > 153
Ralstonia sp. UNC404CL21Col 0.40 ABZR87_RS10395 single-stranded-DNA-specific exonuclease RecJ 0.36 ABZR87_RS01065 DNA repair protein RecN low > 80
Paraburkholderia bryophila 376MFSha3.1 0.40 H281DRAFT_00488 exonuclease RecJ 0.35 H281DRAFT_04692 DNA replication and repair protein RecN low > 103
Burkholderia phytofirmans PsJN 0.40 BPHYT_RS12730 single-stranded DNA exonuclease 0.35 BPHYT_RS03560 DNA repair protein low > 109
Paraburkholderia graminis OAS925 0.39 ABIE53_002771 single-stranded-DNA-specific exonuclease 0.35 ABIE53_000856 DNA repair protein RecN (Recombination protein N) low > 113
Variovorax sp. SCN45 0.39 GFF6700 Single-stranded-DNA-specific exonuclease RecJ 0.32 GFF2357 DNA repair protein RecN low > 127
Castellaniella sp019104865 MT123 0.38 ABCV34_RS05005 single-stranded-DNA-specific exonuclease RecJ 0.33 ABCV34_RS07470 DNA repair protein RecN 0.35 15
Hydrogenophaga sp. GW460-11-11-14-LB1 0.36 GFF739 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) 0.32 GFF829 DNA repair protein RecN — —
Parabacteroides merdae CL09T00C40 0.25 HMPREF1078_RS07725 single-stranded-DNA-specific exonuclease RecJ 0.25 HMPREF1078_RS02000 DNA repair protein RecN low > 61
Bacteroides thetaiotaomicron VPI-5482 0.24 BT3939 single-stranded-DNA-specific exonuclease recJ (NCBI ptt file) 0.25 BT1361 DNA repair protein recN (Recombination protein N) (NCBI ptt file) — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.24 ABZR88_RS18635 single-stranded-DNA-specific exonuclease RecJ 0.26 ABZR88_RS06580 DNA repair protein RecN low > 71
Phocaeicola vulgatus CL09T03C04 0.24 HMPREF1058_RS14835 single-stranded-DNA-specific exonuclease RecJ 0.23 HMPREF1058_RS18225 DNA repair protein RecN low > 67
Phocaeicola dorei CL03T12C01 0.24 ABI39_RS10550 single-stranded-DNA-specific exonuclease RecJ 0.23 ABI39_RS14500 DNA repair protein RecN — —
Pedobacter sp. GW460-11-11-14-LB5 0.24 CA265_RS25225 single-stranded-DNA-specific exonuclease RecJ 0.23 CA265_RS14855 DNA repair protein RecN — —
Bacteroides ovatus ATCC 8483 0.24 BACOVA_01165 single-stranded-DNA-specific exonuclease RecJ 0.24 BACOVA_00200 DNA repair protein RecN — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.24 Echvi_1332 single-stranded-DNA-specific exonuclease RecJ 0.23 Echvi_2067 DNA repair protein RecN 0.41 3
Rhodospirillum rubrum S1H 0.24 Rru_A2408 RecJ exonuclease (NCBI) 0.24 Rru_A0940 DNA repair protein RecN (NCBI) — —
Agrobacterium fabrum C58 0.24 Atu1586 single-stranded-DNA-specific exonuclease 0.26 Atu2083 DNA repair protein RecN — —
Bacteroides stercoris CC31F 0.24 HMPREF1181_RS06545 single-stranded-DNA-specific exonuclease RecJ 0.24 HMPREF1181_RS10900 DNA repair protein RecN low > 56
Bosea sp. OAE506 0.24 ABIE41_RS19130 single-stranded-DNA-specific exonuclease RecJ 0.24 ABIE41_RS12645 DNA repair protein RecN low > 77
Pontibacter actiniarum KMM 6156, DSM 19842 0.23 CA264_17545 single-stranded-DNA-specific exonuclease RecJ 0.21 CA264_13235 DNA repair protein RecN 0.47 7
Rhodopseudomonas palustris CGA009 0.23 TX73_012960 single-stranded-DNA-specific exonuclease RecJ 0.24 TX73_018240 DNA repair protein RecN — —
Azospirillum sp. SherDot2 0.23 MPMX19_00667 Single-stranded-DNA-specific exonuclease RecJ 0.24 MPMX19_01601 DNA repair protein RecN — —
Phaeobacter inhibens DSM 17395 0.23 PGA1_c08630 single-stranded-DNA-specific exonuclease RecJ 0.24 PGA1_c09720 DNA repair protein RecN — —
Magnetospirillum magneticum AMB-1 0.23 AMB_RS18875 single-stranded-DNA-specific exonuclease RecJ 0.27 AMB_RS19520 DNA repair protein RecN — —
Desulfovibrio vulgaris Hildenborough JW710 0.22 DVU0904 recJ single-stranded-DNA-specific exonuclease RecJ (TIGR) 0.17 DVU2463 recN DNA repair protein RecN (TIGR) low > 55
Desulfovibrio vulgaris Miyazaki F 0.22 DvMF_1134 single-stranded-DNA-specific exonuclease RecJ (RefSeq) 0.09 DvMF_0923 SMC domain protein (RefSeq) 0.58 4
Dinoroseobacter shibae DFL-12 0.21 Dshi_2275 single-stranded-DNA-specific exonuclease RecJ (RefSeq) 0.24 Dshi_2413 DNA repair protein RecN (RefSeq) — —
Sphingomonas koreensis DSMZ 15582 0.21 Ga0059261_3089 single-stranded-DNA-specific exonuclease RecJ 0.25 Ga0059261_1026 DNA repair protein RecN — —
Sinorhizobium meliloti 1021 0.19 SMc00292 single-stranded-DNA-specific exonuclease 0.27 SMc01877 DNA repair protein — —
Rhodanobacter denitrificans MT42 0.17 LRK55_RS18310 DHHA1 domain-containing protein 0.33 LRK55_RS17815 DNA repair protein RecN low > 63

Not shown: 2 genomes with orthologs for b2892 only; 9 genomes with orthologs for b2616 only