Conservation of cofitness between b2616 and b2892 in Escherichia coli BW25113

90 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b2616 recN recombination and repair protein (NCBI) 1.0 b2892 recJ ssDNA exonuclease, 5' --> 3'-specific (NCBI) 0.45 13
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_01091 DNA repair protein RecN 0.99 OHPLBJKB_00823 Single-stranded-DNA-specific exonuclease RecJ low > 73
Escherichia coli ECOR27 1.00 NOLOHH_12815 recN DNA repair protein RecN 0.99 NOLOHH_11505 recJ single-stranded-DNA-specific exonuclease RecJ low > 57
Escherichia coli ECRC62 1.00 BNILDI_11620 recN DNA repair protein RecN 0.99 BNILDI_10035 recJ single-stranded-DNA-specific exonuclease RecJ — —
Escherichia coli BL21 1.00 ECD_02504 recombination and repair protein 0.99 ECD_02724 ssDNA exonuclease, 5 low > 60
Escherichia coli ECRC102 0.99 NIAGMN_18915 recN DNA repair protein RecN 0.99 NIAGMN_17345 recJ single-stranded-DNA-specific exonuclease RecJ — —
Escherichia coli ECRC101 0.99 MCAODC_11670 recN DNA repair protein RecN 0.99 MCAODC_10100 recJ single-stranded-DNA-specific exonuclease RecJ — —
Escherichia coli ECRC101 0.99 OKFHMN_21145 recN DNA repair protein RecN 0.99 OKFHMN_19580 recJ single-stranded-DNA-specific exonuclease RecJ — —
Escherichia coli ECRC99 0.99 KEDOAH_07075 recN DNA repair protein RecN 0.99 KEDOAH_08560 recJ single-stranded-DNA-specific exonuclease RecJ — —
Escherichia fergusonii Becca 0.99 EFB2_01277 DNA repair protein RecN 0.99 EFB2_01009 Single-stranded-DNA-specific exonuclease RecJ low > 86
Escherichia coli ECOR38 0.99 HEPCGN_20265 recN DNA repair protein RecN 0.99 HEPCGN_18870 recJ single-stranded-DNA-specific exonuclease RecJ low > 85
Escherichia coli ECRC98 0.99 JDDGAC_24810 recN DNA repair protein RecN 0.99 JDDGAC_23220 recJ single-stranded-DNA-specific exonuclease RecJ — —
Escherichia coli Nissle 1917 0.99 ECOLIN_RS14775 DNA repair protein RecN 0.99 ECOLIN_RS16115 single-stranded-DNA-specific exonuclease RecJ low > 52
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.92 GFF4162 DNA repair protein RecN 0.93 GFF2989 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) 0.57 17
Enterobacter asburiae PDN3 0.86 EX28DRAFT_2719 DNA repair protein RecN 0.90 EX28DRAFT_2943 single-stranded-DNA-specific exonuclease RecJ low > 76
Enterobacter sp. TBS_079 0.85 MPMX20_03486 DNA repair protein RecN 0.89 MPMX20_03751 Single-stranded-DNA-specific exonuclease RecJ 0.17 80
Klebsiella michiganensis M5al 0.84 BWI76_RS21560 DNA repair protein RecN 0.89 BWI76_RS23805 ssDNA exonuclease RecJ low > 92
Serratia liquefaciens MT49 0.77 IAI46_19635 DNA repair protein RecN 0.79 IAI46_20720 single-stranded-DNA-specific exonuclease RecJ 0.40 54
Pantoea sp. MT58 0.77 IAI47_04810 DNA repair protein RecN 0.77 IAI47_03830 single-stranded-DNA-specific exonuclease RecJ low > 76
Rahnella sp. WP5 0.75 EX31_RS21760 DNA repair protein RecN 0.76 EX31_RS13470 single-stranded-DNA-specific exonuclease RecJ 0.42 1
Dickeya dadantii 3937 0.73 DDA3937_RS04325 DNA repair protein RecN 0.76 DDA3937_RS03310 single-stranded-DNA-specific exonuclease RecJ low > 74
Erwinia tracheiphila SCR3 0.73 LU632_RS16985 recN DNA repair protein RecN 0.72 LU632_RS05985 recJ single-stranded-DNA-specific exonuclease RecJ low > 74
Dickeya dianthicola 67-19 0.72 HGI48_RS04320 DNA repair protein RecN 0.77 HGI48_RS03450 single-stranded-DNA-specific exonuclease RecJ low > 71
Dickeya dianthicola ME23 0.72 DZA65_RS04235 DNA repair protein RecN 0.77 DZA65_RS03495 single-stranded-DNA-specific exonuclease RecJ low > 75
Pectobacterium carotovorum WPP14 0.72 HER17_RS17420 DNA repair protein RecN 0.72 HER17_RS17880 single-stranded-DNA-specific exonuclease RecJ 0.49 55
Shewanella oneidensis MR-1 0.55 SO3462 recN DNA repair protein RecN (NCBI ptt file) 0.57 SO0952 recJ single-stranded-DNA-specific exonuclease RecJ (NCBI ptt file) 0.55 6
Shewanella sp. ANA-3 0.55 Shewana3_1104 recombination and repair protein (RefSeq) 0.58 Shewana3_3329 single-stranded-DNA-specific exonuclease RecJ (RefSeq) 0.64 41
Shewanella amazonensis SB2B 0.54 Sama_1026 recombination and repair protein (RefSeq) 0.57 Sama_2737 single-stranded-DNA-specific exonuclease RecJ (RefSeq) 0.77 1
Shewanella loihica PV-4 0.53 Shew_1196 recombination and repair protein (RefSeq) 0.57 Shew_0772 single-stranded-DNA-specific exonuclease RecJ (RefSeq) 0.59 12
Vibrio cholerae E7946 ATCC 55056 0.53 CSW01_04395 DNA repair protein RecN 0.64 CSW01_12240 single-stranded-DNA-specific exonuclease RecJ 0.39 40
Alteromonas macleodii MIT1002 0.43 MIT1002_01443 Recombination protein N 0.53 MIT1002_00788 Single-stranded-DNA-specific exonuclease RecJ low > 70
Pseudomonas fluorescens GW456-L13 0.40 PfGW456L13_5106 DNA repair protein RecN 0.55 PfGW456L13_1730 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) 0.33 33
Marinobacter adhaerens HP15 0.40 HP15_3084 DNA repair protein RecN 0.50 HP15_766 bacterial RecJ exonuclease 0.73 12
Pseudomonas fluorescens FW300-N1B4 0.39 Pf1N1B4_1178 DNA repair protein RecN 0.56 Pf1N1B4_3020 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) low > 87
Pseudomonas fluorescens FW300-N2E2 0.39 Pf6N2E2_3370 DNA repair protein RecN 0.56 Pf6N2E2_3137 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) 0.63 9
Pseudomonas sp. S08-1 0.39 OH686_17050 DNA repair protein RecN 0.56 OH686_06955 single-stranded-DNA-specific exonuclease RecJ 0.56 28
Pseudomonas simiae WCS417 0.39 PS417_24070 recombination and repair protein 0.57 PS417_22855 ssDNA exonuclease RecJ 0.26 21
Pseudomonas sp. RS175 0.39 PFR28_00071 DNA repair protein RecN 0.55 PFR28_00339 Single-stranded-DNA-specific exonuclease RecJ low > 88
Pseudomonas fluorescens SBW25-INTG 0.38 PFLU_RS25910 DNA repair protein RecN 0.56 PFLU_RS24515 single-stranded-DNA-specific exonuclease RecJ low > 109
Pseudomonas fluorescens SBW25 0.38 PFLU_RS25910 DNA repair protein RecN 0.56 PFLU_RS24515 single-stranded-DNA-specific exonuclease RecJ low > 109
Pseudomonas fluorescens FW300-N2C3 0.38 AO356_07510 DNA repair protein RecN 0.56 AO356_06345 single-stranded-DNA-specific exonuclease RecJ 0.26 86
Pseudomonas fluorescens FW300-N2E3 0.38 AO353_05660 DNA repair protein RecN 0.55 AO353_04320 single-stranded-DNA-specific exonuclease RecJ 0.48 11
Pseudomonas syringae pv. syringae B728a ΔmexB 0.38 Psyr_4197 DNA replication and repair protein RecN 0.57 Psyr_1298 exonuclease RecJ low > 86
Pseudomonas syringae pv. syringae B728a 0.38 Psyr_4197 DNA replication and repair protein RecN 0.57 Psyr_1298 exonuclease RecJ 0.32 50
Herbaspirillum seropedicae SmR1 0.38 HSERO_RS03060 DNA repair protein 0.41 HSERO_RS13965 single-stranded DNA exonuclease 0.27 70
Pseudomonas stutzeri RCH2 0.38 Psest_0962 DNA repair protein RecN 0.53 Psest_1544 single-stranded-DNA-specific exonuclease RecJ 0.38 14
Paraburkholderia sabiae LMG 24235 0.37 QEN71_RS26535 DNA repair protein RecN 0.41 QEN71_RS05835 single-stranded-DNA-specific exonuclease RecJ low > 153
Pseudomonas putida KT2440 0.37 PP_4729 factor used in recombination and DNA repair 0.55 PP_1477 ssDNA-specific exonuclease RecJ low > 96
Kangiella aquimarina DSM 16071 0.37 B158DRAFT_0601 DNA replication and repair protein RecN 0.49 B158DRAFT_2268 single-stranded-DNA-specific exonuclease RecJ 0.67 8
Ralstonia sp. UNC404CL21Col 0.36 ABZR87_RS01065 DNA repair protein RecN 0.40 ABZR87_RS10395 single-stranded-DNA-specific exonuclease RecJ low > 80
Ralstonia solanacearum PSI07 0.36 RPSI07_RS11890 DNA repair protein RecN 0.41 RPSI07_RS18620 single-stranded-DNA-specific exonuclease RecJ low > 81
Ralstonia solanacearum UW163 0.36 UW163_RS08210 DNA repair protein RecN 0.41 UW163_RS12210 single-stranded-DNA-specific exonuclease RecJ — —
Ralstonia solanacearum IBSBF1503 0.36 RALBFv3_RS05415 DNA repair protein RecN 0.41 RALBFv3_RS14740 single-stranded-DNA-specific exonuclease RecJ low > 76
Paraburkholderia graminis OAS925 0.35 ABIE53_000856 DNA repair protein RecN (Recombination protein N) 0.39 ABIE53_002771 single-stranded-DNA-specific exonuclease 0.23 113
Cupriavidus basilensis FW507-4G11 0.35 RR42_RS05910 DNA repair protein 0.41 RR42_RS06090 single-stranded DNA exonuclease 0.73 1
Ralstonia solanacearum GMI1000 0.35 RS_RS13275 DNA repair protein RecN 0.41 RS_RS05550 single-stranded-DNA-specific exonuclease RecJ low > 80
Burkholderia phytofirmans PsJN 0.35 BPHYT_RS03560 DNA repair protein 0.40 BPHYT_RS12730 single-stranded DNA exonuclease low > 109
Paraburkholderia bryophila 376MFSha3.1 0.35 H281DRAFT_04692 DNA replication and repair protein RecN 0.40 H281DRAFT_00488 exonuclease RecJ low > 103
Dyella japonica UNC79MFTsu3.2 0.34 ABZR86_RS05665 DNA repair protein RecN 0.44 ABZR86_RS02800 single-stranded-DNA-specific exonuclease RecJ low > 74
Castellaniella sp019104865 MT123 0.33 ABCV34_RS07470 DNA repair protein RecN 0.38 ABCV34_RS05005 single-stranded-DNA-specific exonuclease RecJ low > 48
Rhodanobacter sp. FW510-T8 0.33 OKGIIK_07340 recN DNA repair protein RecN 0.41 OKGIIK_06995 recJ single-stranded-DNA-specific exonuclease RecJ low > 52
Rhodanobacter denitrificans MT42 0.33 LRK55_RS17815 DNA repair protein RecN 0.17 LRK55_RS18310 DHHA1 domain-containing protein low > 63
Rhodanobacter denitrificans FW104-10B01 0.33 LRK54_RS17960 DNA repair protein RecN 0.41 LRK54_RS00315 single-stranded-DNA-specific exonuclease RecJ low > 59
Dechlorosoma suillum PS 0.33 Dsui_3072 DNA repair protein RecN 0.44 Dsui_2860 single-stranded-DNA-specific exonuclease RecJ — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.32 GFF829 DNA repair protein RecN 0.36 GFF739 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) — —
Acidovorax sp. GW101-3H11 0.32 Ac3H11_3460 DNA repair protein RecN 0.41 Ac3H11_1746 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) — —
Variovorax sp. SCN45 0.32 GFF2357 DNA repair protein RecN 0.39 GFF6700 Single-stranded-DNA-specific exonuclease RecJ low > 127
Xanthomonas campestris pv. campestris strain 8004 0.30 Xcc-8004.3431.1 DNA repair protein RecN 0.43 Xcc-8004.2909.1 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) low > 74
Acinetobacter radioresistens SK82 0.29 MPMX26_00239 DNA repair protein RecN 0.42 MPMX26_02917 Single-stranded-DNA-specific exonuclease RecJ low > 36
Magnetospirillum magneticum AMB-1 0.27 AMB_RS19520 DNA repair protein RecN 0.23 AMB_RS18875 single-stranded-DNA-specific exonuclease RecJ — —
Sinorhizobium meliloti 1021 0.27 SMc01877 DNA repair protein 0.19 SMc00292 single-stranded-DNA-specific exonuclease — —
Agrobacterium fabrum C58 0.26 Atu2083 DNA repair protein RecN 0.24 Atu1586 single-stranded-DNA-specific exonuclease — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.26 ABZR88_RS06580 DNA repair protein RecN 0.24 ABZR88_RS18635 single-stranded-DNA-specific exonuclease RecJ low > 71
Sphingomonas koreensis DSMZ 15582 0.25 Ga0059261_1026 DNA repair protein RecN 0.21 Ga0059261_3089 single-stranded-DNA-specific exonuclease RecJ — —
Bacteroides thetaiotaomicron VPI-5482 0.25 BT1361 DNA repair protein recN (Recombination protein N) (NCBI ptt file) 0.24 BT3939 single-stranded-DNA-specific exonuclease recJ (NCBI ptt file) — —
Parabacteroides merdae CL09T00C40 0.25 HMPREF1078_RS02000 DNA repair protein RecN 0.25 HMPREF1078_RS07725 single-stranded-DNA-specific exonuclease RecJ low > 61
Bosea sp. OAE506 0.24 ABIE41_RS12645 DNA repair protein RecN 0.24 ABIE41_RS19130 single-stranded-DNA-specific exonuclease RecJ low > 77
Rhodospirillum rubrum S1H 0.24 Rru_A0940 DNA repair protein RecN (NCBI) 0.24 Rru_A2408 RecJ exonuclease (NCBI) — —
Bacteroides stercoris CC31F 0.24 HMPREF1181_RS10900 DNA repair protein RecN 0.24 HMPREF1181_RS06545 single-stranded-DNA-specific exonuclease RecJ low > 56
Phaeobacter inhibens DSM 17395 0.24 PGA1_c09720 DNA repair protein RecN 0.23 PGA1_c08630 single-stranded-DNA-specific exonuclease RecJ — —
Bacteroides ovatus ATCC 8483 0.24 BACOVA_00200 DNA repair protein RecN 0.24 BACOVA_01165 single-stranded-DNA-specific exonuclease RecJ — —
Rhodopseudomonas palustris CGA009 0.24 TX73_018240 DNA repair protein RecN 0.23 TX73_012960 single-stranded-DNA-specific exonuclease RecJ — —
Dinoroseobacter shibae DFL-12 0.24 Dshi_2413 DNA repair protein RecN (RefSeq) 0.21 Dshi_2275 single-stranded-DNA-specific exonuclease RecJ (RefSeq) — —
Azospirillum sp. SherDot2 0.24 MPMX19_01601 DNA repair protein RecN 0.23 MPMX19_00667 Single-stranded-DNA-specific exonuclease RecJ — —
Pedobacter sp. GW460-11-11-14-LB5 0.23 CA265_RS14855 DNA repair protein RecN 0.24 CA265_RS25225 single-stranded-DNA-specific exonuclease RecJ — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.23 Echvi_2067 DNA repair protein RecN 0.24 Echvi_1332 single-stranded-DNA-specific exonuclease RecJ 0.41 37
Phocaeicola vulgatus CL09T03C04 0.23 HMPREF1058_RS18225 DNA repair protein RecN 0.24 HMPREF1058_RS14835 single-stranded-DNA-specific exonuclease RecJ low > 67
Phocaeicola dorei CL03T12C01 0.23 ABI39_RS14500 DNA repair protein RecN 0.24 ABI39_RS10550 single-stranded-DNA-specific exonuclease RecJ — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.21 CA264_13235 DNA repair protein RecN 0.23 CA264_17545 single-stranded-DNA-specific exonuclease RecJ 0.47 27
Desulfovibrio vulgaris Hildenborough JW710 0.17 DVU2463 recN DNA repair protein RecN (TIGR) 0.22 DVU0904 recJ single-stranded-DNA-specific exonuclease RecJ (TIGR) low > 55
Desulfovibrio vulgaris Miyazaki F 0.09 DvMF_0923 SMC domain protein (RefSeq) 0.22 DvMF_1134 single-stranded-DNA-specific exonuclease RecJ (RefSeq) 0.58 5

Not shown: 9 genomes with orthologs for b2616 only; 2 genomes with orthologs for b2892 only