Conservation of cofitness between b2616 and b1913 in Escherichia coli BW25113

91 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b2616 recN recombination and repair protein (NCBI) 1.0 b1913 uvrC excinuclease ABC, subunit C; repair of UV damage to DNA (VIMSS) 0.40 19
Escherichia coli ECRC62 1.00 BNILDI_11620 recN DNA repair protein RecN 1.00 BNILDI_15235 uvrC excinuclease ABC subunit UvrC — —
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_01091 DNA repair protein RecN 1.00 OHPLBJKB_01816 UvrABC system protein C low > 73
Escherichia coli ECOR27 1.00 NOLOHH_12815 recN DNA repair protein RecN 1.00 NOLOHH_16445 uvrC excinuclease ABC subunit UvrC — —
Escherichia coli BL21 1.00 ECD_02504 recombination and repair protein 1.00 ECD_01878 excinuclease UvrABC, endonuclease subunit low > 60
Escherichia coli ECRC99 0.99 KEDOAH_07075 recN DNA repair protein RecN 1.00 KEDOAH_02265 uvrC excinuclease ABC subunit UvrC — —
Escherichia coli ECRC101 0.99 OKFHMN_21145 recN DNA repair protein RecN 1.00 OKFHMN_25825 uvrC excinuclease ABC subunit UvrC — —
Escherichia coli ECRC102 0.99 NIAGMN_18915 recN DNA repair protein RecN 1.00 NIAGMN_02225 uvrC excinuclease ABC subunit UvrC — —
Escherichia coli ECRC101 0.99 MCAODC_11670 recN DNA repair protein RecN 1.00 MCAODC_19565 uvrC excinuclease ABC subunit UvrC — —
Escherichia fergusonii Becca 0.99 EFB2_01277 DNA repair protein RecN 1.00 EFB2_02033 UvrABC system protein C low > 86
Escherichia coli ECRC98 0.99 JDDGAC_24810 recN DNA repair protein RecN 1.00 JDDGAC_00415 uvrC excinuclease ABC subunit UvrC — —
Escherichia coli ECOR38 0.99 HEPCGN_20265 recN DNA repair protein RecN 1.00 HEPCGN_04180 uvrC excinuclease ABC subunit UvrC low > 85
Escherichia coli Nissle 1917 0.99 ECOLIN_RS14775 DNA repair protein RecN 1.00 ECOLIN_RS10895 excinuclease ABC subunit UvrC low > 52
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.92 GFF4162 DNA repair protein RecN 0.96 GFF1700 Excinuclease ABC subunit C low > 78
Enterobacter asburiae PDN3 0.86 EX28DRAFT_2719 DNA repair protein RecN 0.94 EX28DRAFT_0634 Excinuclease ABC subunit C low > 76
Enterobacter sp. TBS_079 0.85 MPMX20_03486 DNA repair protein RecN 0.94 MPMX20_02838 UvrABC system protein C low > 85
Klebsiella michiganensis M5al 0.84 BWI76_RS21560 DNA repair protein RecN 0.94 BWI76_RS18330 excinuclease ABC subunit C low > 92
Serratia liquefaciens MT49 0.77 IAI46_19635 DNA repair protein RecN 0.86 IAI46_09210 excinuclease ABC subunit UvrC 0.55 4
Pantoea sp. MT58 0.77 IAI47_04810 DNA repair protein RecN 0.86 IAI47_12465 excinuclease ABC subunit UvrC low > 76
Rahnella sp. WP5 0.75 EX31_RS21760 DNA repair protein RecN 0.83 EX31_RS24150 excinuclease ABC subunit UvrC low > 89
Dickeya dadantii 3937 0.73 DDA3937_RS04325 DNA repair protein RecN 0.85 DDA3937_RS13700 excinuclease ABC subunit UvrC low > 74
Erwinia tracheiphila SCR3 0.73 LU632_RS16985 recN DNA repair protein RecN 0.86 LU632_RS10195 uvrC excinuclease ABC subunit UvrC low > 74
Dickeya dianthicola 67-19 0.72 HGI48_RS04320 DNA repair protein RecN 0.86 HGI48_RS13795 excinuclease ABC subunit UvrC low > 71
Dickeya dianthicola ME23 0.72 DZA65_RS04235 DNA repair protein RecN 0.86 DZA65_RS14285 excinuclease ABC subunit UvrC low > 75
Pectobacterium carotovorum WPP14 0.72 HER17_RS17420 DNA repair protein RecN 0.87 HER17_RS07715 excinuclease ABC subunit UvrC low > 75
Shewanella oneidensis MR-1 0.55 SO3462 recN DNA repair protein RecN (NCBI ptt file) 0.58 SO1861 uvrC excinuclease ABC, C subunit (NCBI ptt file) 0.51 8
Shewanella sp. ANA-3 0.55 Shewana3_1104 recombination and repair protein (RefSeq) 0.58 Shewana3_1609 uvrC excinuclease ABC subunit C (RefSeq) low > 73
Shewanella amazonensis SB2B 0.54 Sama_1026 recombination and repair protein (RefSeq) 0.60 Sama_1608 uvrC excinuclease ABC subunit C (RefSeq) 0.67 8
Shewanella loihica PV-4 0.53 Shew_1196 recombination and repair protein (RefSeq) 0.58 Shew_1825 uvrC excinuclease ABC subunit C (RefSeq) 0.62 7
Vibrio cholerae E7946 ATCC 55056 0.53 CSW01_04395 DNA repair protein RecN 0.65 CSW01_06140 excinuclease ABC subunit C 0.38 45
Alteromonas macleodii MIT1002 0.43 MIT1002_01443 Recombination protein N 0.58 MIT1002_02153 Excinuclease ABC subunit C low > 70
Pseudomonas fluorescens GW456-L13 0.40 PfGW456L13_5106 DNA repair protein RecN 0.51 PfGW456L13_2886 Excinuclease ABC subunit C low > 87
Marinobacter adhaerens HP15 0.40 HP15_3084 DNA repair protein RecN 0.49 HP15_1568 excinuclease ABC subunit C 0.86 7
Pseudomonas fluorescens FW300-N1B4 0.39 Pf1N1B4_1178 DNA repair protein RecN 0.51 Pf1N1B4_5618 Excinuclease ABC subunit C 0.42 4
Pseudomonas fluorescens FW300-N2E2 0.39 Pf6N2E2_3370 DNA repair protein RecN 0.49 Pf6N2E2_2021 Excinuclease ABC subunit C 0.69 4
Pseudomonas sp. S08-1 0.39 OH686_17050 DNA repair protein RecN 0.49 OH686_00340 excinuclease ABC subunit C low > 80
Pseudomonas simiae WCS417 0.39 PS417_24070 recombination and repair protein 0.51 PS417_10725 excinuclease ABC subunit C 0.43 9
Pseudomonas sp. RS175 0.39 PFR28_00071 DNA repair protein RecN 0.49 PFR28_01411 UvrABC system protein C low > 88
Pseudomonas fluorescens SBW25-INTG 0.38 PFLU_RS25910 DNA repair protein RecN 0.51 PFLU_RS10770 excinuclease ABC subunit UvrC low > 109
Pseudomonas fluorescens FW300-N2C3 0.38 AO356_07510 DNA repair protein RecN 0.51 AO356_00350 excinuclease ABC subunit C 0.81 3
Pseudomonas fluorescens SBW25 0.38 PFLU_RS25910 DNA repair protein RecN 0.51 PFLU_RS10770 excinuclease ABC subunit UvrC 0.55 6
Pseudomonas fluorescens FW300-N2E3 0.38 AO353_05660 DNA repair protein RecN 0.51 AO353_21835 excinuclease ABC subunit C 0.62 4
Pseudomonas syringae pv. syringae B728a ΔmexB 0.38 Psyr_4197 DNA replication and repair protein RecN 0.51 Psyr_2896 Excinuclease ABC subunit C 0.38 62
Pseudomonas syringae pv. syringae B728a 0.38 Psyr_4197 DNA replication and repair protein RecN 0.51 Psyr_2896 Excinuclease ABC subunit C 0.42 9
Pseudomonas stutzeri RCH2 0.38 Psest_0962 DNA repair protein RecN 0.51 Psest_2259 excinuclease ABC, C subunit 0.73 4
Herbaspirillum seropedicae SmR1 0.38 HSERO_RS03060 DNA repair protein 0.42 HSERO_RS09690 excinuclease ABC subunit C low > 78
Pseudomonas putida KT2440 0.37 PP_4729 factor used in recombination and DNA repair 0.51 PP_4098 UvrABC system protein C low > 96
Kangiella aquimarina DSM 16071 0.37 B158DRAFT_0601 DNA replication and repair protein RecN 0.48 B158DRAFT_1273 Excinuclease ABC subunit C 0.64 10
Ralstonia sp. UNC404CL21Col 0.36 ABZR87_RS01065 DNA repair protein RecN 0.44 ABZR87_RS10245 excinuclease ABC subunit UvrC low > 80
Ralstonia solanacearum PSI07 0.36 RPSI07_RS11890 DNA repair protein RecN 0.43 RPSI07_RS18935 excinuclease ABC subunit UvrC low > 81
Ralstonia solanacearum UW163 0.36 UW163_RS08210 DNA repair protein RecN 0.43 UW163_RS11990 excinuclease ABC subunit UvrC — —
Ralstonia solanacearum IBSBF1503 0.36 RALBFv3_RS05415 DNA repair protein RecN 0.43 RALBFv3_RS14525 excinuclease ABC subunit UvrC low > 76
Ralstonia solanacearum GMI1000 0.35 RS_RS13275 DNA repair protein RecN 0.43 RS_RS05305 excinuclease ABC subunit UvrC low > 80
Cupriavidus basilensis FW507-4G11 0.35 RR42_RS05910 DNA repair protein 0.42 RR42_RS14000 excinuclease ABC subunit C 0.69 4
Dyella japonica UNC79MFTsu3.2 0.34 ABZR86_RS05665 DNA repair protein RecN 0.48 ABZR86_RS02245 excinuclease ABC subunit UvrC 0.85 4
Castellaniella sp019104865 MT123 0.33 ABCV34_RS07470 DNA repair protein RecN 0.41 ABCV34_RS06980 excinuclease ABC subunit UvrC low > 48
Rhodanobacter sp. FW510-T8 0.33 OKGIIK_07340 recN DNA repair protein RecN 0.48 OKGIIK_06930 uvrC excinuclease ABC subunit UvrC low > 52
Rhodanobacter denitrificans MT42 0.33 LRK55_RS17815 DNA repair protein RecN 0.49 LRK55_RS00120 excinuclease ABC subunit UvrC low > 63
Rhodanobacter denitrificans FW104-10B01 0.33 LRK54_RS17960 DNA repair protein RecN 0.49 LRK54_RS00380 excinuclease ABC subunit UvrC low > 59
Dechlorosoma suillum PS 0.33 Dsui_3072 DNA repair protein RecN 0.43 Dsui_2470 excinuclease ABC, C subunit 0.83 10
Acidovorax sp. GW101-3H11 0.32 Ac3H11_3460 DNA repair protein RecN 0.38 Ac3H11_373 Excinuclease ABC subunit C low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.32 GFF829 DNA repair protein RecN 0.38 GFF3847 Excinuclease ABC subunit C — —
Variovorax sp. SCN45 0.32 GFF2357 DNA repair protein RecN 0.40 GFF2859 Excinuclease ABC subunit C low > 127
Lysobacter sp. OAE881 0.31 ABIE51_RS11655 DNA repair protein RecN 0.46 ABIE51_RS12455 excinuclease ABC subunit UvrC 0.68 6
Xanthomonas campestris pv. campestris strain 8004 0.30 Xcc-8004.3431.1 DNA repair protein RecN 0.45 Xcc-8004.2477.1 Excinuclease ABC subunit C low > 74
Acinetobacter radioresistens SK82 0.29 MPMX26_00239 DNA repair protein RecN 0.41 MPMX26_00228 UvrABC system protein C 0.61 1
Magnetospirillum magneticum AMB-1 0.27 AMB_RS19520 DNA repair protein RecN 0.34 AMB_RS19240 UvrABC system protein C — —
Sinorhizobium meliloti 1021 0.27 SMc01877 DNA repair protein 0.35 SMc00602 excinuclease ABC subunit C 0.62 8
Agrobacterium fabrum C58 0.26 Atu2083 DNA repair protein RecN 0.35 Atu1129 excinuclease ABC chain C 0.32 28
Mucilaginibacter yixingensis YX-36 DSM 26809 0.26 ABZR88_RS06580 DNA repair protein RecN 0.24 ABZR88_RS04150 excinuclease ABC subunit UvrC low > 71
Sphingomonas koreensis DSMZ 15582 0.25 Ga0059261_1026 DNA repair protein RecN 0.34 Ga0059261_3186 Excinuclease ABC subunit C 0.43 6
Bacteroides thetaiotaomicron VPI-5482 0.25 BT1361 DNA repair protein recN (Recombination protein N) (NCBI ptt file) 0.25 BT3266 excinuclease ABC subunit C (NCBI ptt file) 0.49 17
Parabacteroides merdae CL09T00C40 0.25 HMPREF1078_RS02000 DNA repair protein RecN 0.27 HMPREF1078_RS06310 excinuclease ABC subunit UvrC low > 61
Azospirillum brasilense Sp245 0.24 AZOBR_RS12395 DNA repair protein RecN 0.36 AZOBR_RS08965 excinuclease ABC subunit C — —
Rhodospirillum rubrum S1H 0.24 Rru_A0940 DNA repair protein RecN (NCBI) 0.34 Rru_A2220 Excinuclease ABC, C subunit (NCBI) — —
Bacteroides stercoris CC31F 0.24 HMPREF1181_RS10900 DNA repair protein RecN 0.25 HMPREF1181_RS02095 excinuclease ABC subunit UvrC low > 56
Phaeobacter inhibens DSM 17395 0.24 PGA1_c09720 DNA repair protein RecN 0.35 PGA1_c02880 uvrABC system protein C 0.56 3
Bacteroides ovatus ATCC 8483 0.24 BACOVA_00200 DNA repair protein RecN 0.24 BACOVA_01365 excinuclease ABC, C subunit low > 94
Rhodopseudomonas palustris CGA009 0.24 TX73_018240 DNA repair protein RecN 0.35 TX73_006010 excinuclease ABC subunit UvrC low > 86
Dinoroseobacter shibae DFL-12 0.24 Dshi_2413 DNA repair protein RecN (RefSeq) 0.36 Dshi_0644 excinuclease ABC, C subunit (RefSeq) 0.51 4
Azospirillum sp. SherDot2 0.24 MPMX19_01601 DNA repair protein RecN 0.34 MPMX19_01070 UvrABC system protein C low > 112
Pedobacter sp. GW460-11-11-14-LB5 0.23 CA265_RS14855 DNA repair protein RecN 0.24 CA265_RS18110 excinuclease ABC subunit C 0.83 2
Echinicola vietnamensis KMM 6221, DSM 17526 0.23 Echvi_2067 DNA repair protein RecN 0.25 Echvi_0619 excinuclease ABC, C subunit 0.74 5
Phocaeicola vulgatus CL09T03C04 0.23 HMPREF1058_RS18225 DNA repair protein RecN 0.25 HMPREF1058_RS11525 excinuclease ABC subunit UvrC 0.81 1
Phocaeicola dorei CL03T12C01 0.23 ABI39_RS14500 DNA repair protein RecN 0.24 ABI39_RS05415 excinuclease ABC subunit UvrC low > 72
Synechococcus elongatus PCC 7942 0.23 Synpcc7942_1779 recN DNA repair protein RecN 0.26 Synpcc7942_1945 uvrC excinuclease ABC subunit C 0.74 3
Brevundimonas sp. GW460-12-10-14-LB2 0.22 A4249_RS02620 DNA repair protein RecN 0.34 A4249_RS01670 excinuclease ABC subunit UvrC low > 48
Fusobacterium nucleatum SB010 0.22 HUW76_08055 DNA repair protein RecN 0.26 HUW76_06695 excinuclease ABC subunit UvrC low > 35
Pontibacter actiniarum KMM 6156, DSM 19842 0.21 CA264_13235 DNA repair protein RecN 0.23 CA264_16350 excinuclease ABC subunit C 0.54 20
Caulobacter crescentus NA1000 0.21 CCNA_02062 DNA repair protein recN 0.35 CCNA_02975 excinuclease ABC subunit C 0.84 4
Caulobacter crescentus NA1000 Δfur 0.21 CCNA_02062 DNA repair protein recN 0.35 CCNA_02975 excinuclease ABC subunit C low > 67
Mycobacterium tuberculosis H37Rv 0.21 Rv1696 Probable DNA repair protein RecN (recombination protein N) 0.27 Rv1420 Probable excinuclease ABC (subunit C-nuclease) UvrC low > 58

Not shown: 8 genomes with orthologs for b2616 only; 4 genomes with orthologs for b1913 only