| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli BW25113 | 1.0 | b3822 | recQ | ATP-dependent DNA helicase (NCBI) | 1.0 | b0779 | uvrB | excinuclease ABC subunit B (NCBI) | 0.39 | 4 |
| Escherichia coli Nissle 1917 | 1.00 | ECOLIN_RS21935 | | ATP-dependent DNA helicase RecQ | 1.00 | ECOLIN_RS04150 | | excinuclease ABC subunit UvrB | low | > 52 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 1.00 | OHPLBJKB_04229 | | ATP-dependent DNA helicase RecQ | 1.00 | OHPLBJKB_02934 | | UvrABC system protein B | low | > 73 |
| Escherichia fergusonii Becca | 1.00 | EFB2_04815 | | ATP-dependent DNA helicase RecQ | 1.00 | EFB2_03326 | | UvrABC system protein B | low | > 86 |
| Escherichia coli ECRC62 | 1.00 | BNILDI_05040 | recQ | ATP-dependent DNA helicase RecQ | 1.00 | BNILDI_21020 | uvrB | excinuclease ABC subunit UvrB | — | — |
| Escherichia coli ECRC99 | 1.00 | KEDOAH_13790 | recQ | ATP-dependent DNA helicase RecQ | 1.00 | KEDOAH_21530 | uvrB | excinuclease ABC subunit UvrB | — | — |
| Escherichia coli ECOR27 | 1.00 | NOLOHH_06490 | recQ | ATP-dependent DNA helicase RecQ | 1.00 | NOLOHH_22750 | uvrB | excinuclease ABC subunit UvrB | low | > 57 |
| Escherichia coli ECRC98 | 1.00 | JDDGAC_17985 | recQ | ATP-dependent DNA helicase RecQ | 1.00 | JDDGAC_10015 | uvrB | excinuclease ABC subunit UvrB | — | — |
| Escherichia coli ECRC102 | 1.00 | NIAGMN_12115 | recQ | ATP-dependent DNA helicase RecQ | 1.00 | NIAGMN_04425 | uvrB | excinuclease ABC subunit UvrB | — | — |
| Escherichia coli ECRC101 | 1.00 | MCAODC_04865 | recQ | ATP-dependent DNA helicase RecQ | 1.00 | MCAODC_25595 | uvrB | excinuclease ABC subunit UvrB | — | — |
| Escherichia coli ECRC101 | 1.00 | OKFHMN_14360 | recQ | ATP-dependent DNA helicase RecQ | 1.00 | OKFHMN_06380 | uvrB | excinuclease ABC subunit UvrB | — | — |
| Escherichia coli ECOR38 | 1.00 | HEPCGN_13060 | recQ | ATP-dependent DNA helicase RecQ | 1.00 | HEPCGN_01660 | uvrB | excinuclease ABC subunit UvrB | low | > 85 |
| Escherichia coli BL21 | 1.00 | ECD_03701 | | ATP-dependent DNA helicase | 1.00 | ECD_00746 | | exision nuclease of nucleotide excision repair, DNA damage recognition component | 0.74 | 9 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.95 | GFF248 | | ATP-dependent DNA helicase RecQ | 0.93 | GFF675 | | Excinuclease ABC subunit B | low | > 78 |
| Enterobacter sp. TBS_079 | 0.93 | MPMX20_04458 | | ATP-dependent DNA helicase RecQ | 0.94 | MPMX20_01408 | | UvrABC system protein B | low | > 85 |
| Enterobacter asburiae PDN3 | 0.92 | EX28DRAFT_4487 | | ATP-dependent DNA helicase RecQ | 0.94 | EX28DRAFT_2211 | | Excinuclease ABC subunit B | low | > 76 |
| Klebsiella michiganensis M5al | 0.92 | BWI76_RS01245 | | DNA helicase RecQ | 0.93 | BWI76_RS08785 | | excinuclease ABC subunit B | low | > 92 |
| Pectobacterium carotovorum WPP14 | 0.82 | HER17_RS01395 | | ATP-dependent DNA helicase RecQ | 0.88 | HER17_RS13420 | | excinuclease ABC subunit B | low | > 75 |
| Erwinia tracheiphila SCR3 | 0.82 | LU632_RS24095 | recQ | ATP-dependent DNA helicase RecQ | 0.90 | LU632_RS09160 | uvrB | excinuclease ABC subunit B | low | > 74 |
| Pantoea sp. MT58 | 0.82 | IAI47_18360 | | ATP-dependent DNA helicase RecQ | 0.89 | IAI47_13505 | | excinuclease ABC subunit B | 0.28 | 73 |
| Rahnella sp. WP5 | 0.81 | EX31_RS15210 | | ATP-dependent DNA helicase RecQ | 0.87 | EX31_RS23720 | | excinuclease ABC subunit B | low | > 89 |
| Serratia liquefaciens MT49 | 0.81 | IAI46_00770 | | ATP-dependent DNA helicase RecQ | 0.88 | IAI46_06550 | | excinuclease ABC subunit B | 0.67 | 14 |
| Dickeya dianthicola ME23 | 0.80 | DZA65_RS21045 | | ATP-dependent DNA helicase RecQ | 0.87 | DZA65_RS08990 | | excinuclease ABC subunit B | low | > 75 |
| Dickeya dianthicola 67-19 | 0.80 | HGI48_RS20005 | | ATP-dependent DNA helicase RecQ | 0.86 | HGI48_RS08695 | | excinuclease ABC subunit B | low | > 71 |
| Dickeya dadantii 3937 | 0.80 | DDA3937_RS19850 | | ATP-dependent DNA helicase RecQ | 0.87 | DDA3937_RS08530 | | excinuclease ABC subunit B | low | > 74 |
| Vibrio cholerae E7946 ATCC 55056 | 0.67 | CSW01_01045 | | DNA helicase RecQ | 0.78 | CSW01_05185 | | excinuclease ABC subunit UvrB | low | > 62 |
| Shewanella oneidensis MR-1 | 0.58 | SO4241 | recQ | ATP-dependent DNA helicase RecQ (NCBI ptt file) | 0.75 | SO2506 | uvrB | excinuclease ABC, B subunit (NCBI ptt file) | 0.53 | 9 |
| Shewanella sp. ANA-3 | 0.58 | Shewana3_3763 | | ATP-dependent DNA helicase RecQ (RefSeq) | 0.74 | Shewana3_2166 | | excinuclease ABC subunit B (RefSeq) | low | > 73 |
| Shewanella amazonensis SB2B | 0.58 | Sama_0333 | | ATP-dependent DNA helicase RecQ (RefSeq) | 0.74 | Sama_1828 | | excinuclease ABC subunit B (RefSeq) | 0.60 | 12 |
| Shewanella loihica PV-4 | 0.57 | Shew_3474 | | ATP-dependent DNA helicase RecQ (RefSeq) | 0.74 | Shew_2064 | | excinuclease ABC subunit B (RefSeq) | 0.72 | 10 |
| Alteromonas macleodii MIT1002 | 0.53 | MIT1002_00148 | | ATP-dependent DNA helicase RecQ | 0.74 | MIT1002_01261 | | Excinuclease ABC subunit B | low | > 70 |
| Pseudomonas fluorescens GW456-L13 | 0.45 | PfGW456L13_4423 | | ATP-dependent DNA helicase RecQ | 0.70 | PfGW456L13_3959 | | Excinuclease ABC subunit B | 0.25 | 63 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.45 | CA264_07560 | | DNA helicase RecQ | 0.53 | CA264_19110 | | excinuclease ABC subunit B | low | > 74 |
| Pseudomonas putida KT2440 | 0.45 | PP_4516 | | ATP-dependent DNA 3 | 0.70 | PP_1974 | | excinuclease UvrABC protein B | — | — |
| Pseudomonas sp. RS175 | 0.45 | PFR28_00788 | | ATP-dependent DNA helicase RecQ | 0.71 | PFR28_02837 | | UvrABC system protein B | 0.21 | 40 |
| Herbaspirillum seropedicae SmR1 | 0.45 | HSERO_RS02465 | | ATP-dependent DNA helicase RecQ | 0.64 | HSERO_RS15840 | | excinuclease ABC subunit B | 0.54 | 6 |
| Pseudomonas fluorescens FW300-N2C3 | 0.45 | AO356_04050 | | ATP-dependent DNA helicase RecQ | 0.71 | AO356_21335 | | excinuclease ABC subunit B | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.45 | Pf6N2E2_2645 | | ATP-dependent DNA helicase RecQ | 0.71 | Pf6N2E2_52 | | Excinuclease ABC subunit B | 0.24 | 55 |
| Pseudomonas fluorescens FW300-N1B4 | 0.45 | Pf1N1B4_3533 | | ATP-dependent DNA helicase RecQ | 0.71 | Pf1N1B4_26 | | Excinuclease ABC subunit B | low | > 87 |
| Pseudomonas fluorescens SBW25 | 0.45 | PFLU_RS21920 | | DNA helicase RecQ | 0.70 | PFLU_RS20655 | | excinuclease ABC subunit B | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.45 | PFLU_RS21920 | | DNA helicase RecQ | 0.70 | PFLU_RS20655 | | excinuclease ABC subunit B | 0.28 | 49 |
| Pseudomonas simiae WCS417 | 0.45 | PS417_19950 | | ATP-dependent DNA helicase RecQ | 0.70 | PS417_18685 | | excinuclease ABC subunit B | 0.33 | 1 |
| Phocaeicola vulgatus CL09T03C04 | 0.44 | HMPREF1058_RS14585 | | DNA helicase RecQ | 0.52 | HMPREF1058_RS01765 | | excinuclease ABC subunit UvrB | low | > 67 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.44 | ABZR88_RS20865 | | DNA helicase RecQ | 0.57 | ABZR88_RS18110 | | excinuclease ABC subunit UvrB | low | > 71 |
| Rhodanobacter denitrificans FW104-10B01 | 0.44 | LRK54_RS13000 | | DNA helicase RecQ | 0.68 | LRK54_RS14235 | | excinuclease ABC subunit UvrB | low | > 59 |
| Pseudomonas fluorescens FW300-N2E3 | 0.44 | AO353_18430 | | ATP-dependent DNA helicase RecQ | 0.71 | AO353_20545 | | excinuclease ABC subunit B | 0.41 | 10 |
| Dechlorosoma suillum PS | 0.44 | Dsui_3092 | | ATP-dependent DNA helicase RecQ | 0.67 | Dsui_2434 | | excinuclease ABC, B subunit | 0.71 | 35 |
| Pseudomonas stutzeri RCH2 | 0.44 | Psest_1869 | | ATP-dependent DNA helicase RecQ | 0.70 | Psest_1296 | | excinuclease ABC, B subunit | 0.58 | 6 |
| Phocaeicola dorei CL03T12C01 | 0.44 | ABI39_RS10235 | | DNA helicase RecQ | 0.52 | ABI39_RS15300 | | excinuclease ABC subunit UvrB | low | > 72 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.44 | Psyr_3738 | | ATP-dependent DNA helicase RecQ | 0.71 | Psyr_1974 | | Excinuclease ABC subunit B | 0.53 | 4 |
| Dyella japonica UNC79MFTsu3.2 | 0.44 | ABZR86_RS19925 | | DNA helicase RecQ | 0.69 | ABZR86_RS09750 | | excinuclease ABC subunit UvrB | low | > 74 |
| Pseudomonas syringae pv. syringae B728a | 0.44 | Psyr_3738 | | ATP-dependent DNA helicase RecQ | 0.71 | Psyr_1974 | | Excinuclease ABC subunit B | 0.41 | 3 |
| Rhodanobacter denitrificans MT42 | 0.44 | LRK55_RS12700 | | DNA helicase RecQ | 0.68 | LRK55_RS13955 | | excinuclease ABC subunit UvrB | low | > 63 |
| Marinobacter adhaerens HP15 | 0.44 | HP15_1718 | | ATP-dependent DNA helicase RecQ | 0.69 | HP15_1372 | | excinuclease ABC subunit B | low | > 73 |
| Rhodanobacter sp. FW510-T8 | 0.44 | OKGIIK_02375 | recQ | DNA helicase RecQ | 0.68 | OKGIIK_03100 | uvrB | excinuclease ABC subunit UvrB | low | > 52 |
| Pseudomonas sp. S08-1 | 0.43 | OH686_20670 | | ATP-dependent DNA helicase RecQ | 0.70 | OH686_04580 | | excinuclease ABC subunit B | low | > 80 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.43 | Echvi_0784 | | ATP-dependent DNA helicase RecQ | 0.54 | Echvi_1215 | | excinuclease ABC, B subunit | 0.38 | 4 |
| Variovorax sp. OAS795 | 0.43 | ABID97_RS03395 | | DNA helicase RecQ | 0.64 | ABID97_RS13995 | | excinuclease ABC subunit UvrB | low | > 91 |
| Azospirillum brasilense Sp245 | 0.42 | AZOBR_RS02840 | | ATP-dependent DNA helicase RecQ | 0.61 | AZOBR_RS16420 | | excinuclease ABC subunit B | 0.58 | 17 |
| Cupriavidus basilensis FW507-4G11 | 0.42 | RR42_RS19310 | | ATP-dependent DNA helicase RecQ | 0.66 | RR42_RS05995 | | excinuclease ABC subunit B | 0.51 | 13 |
| Magnetospirillum magneticum AMB-1 | 0.42 | AMB_RS21505 | | DNA helicase RecQ | 0.61 | AMB_RS19255 | | excinuclease ABC subunit UvrB | low | > 64 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.42 | Xcc-8004.1476.1 | | ATP-dependent DNA helicase RecQ | 0.69 | Xcc-8004.2034.1 | | Excinuclease ABC subunit B | low | > 74 |
| Ralstonia sp. UNC404CL21Col | 0.42 | ABZR87_RS02880 | | DNA helicase RecQ | 0.67 | ABZR87_RS09940 | | excinuclease ABC subunit UvrB | low | > 80 |
| Bacteroides stercoris CC31F | 0.42 | HMPREF1181_RS14110 | | DNA helicase RecQ | 0.52 | HMPREF1181_RS15225 | | excinuclease ABC subunit UvrB | low | > 56 |
| Burkholderia phytofirmans PsJN | 0.42 | BPHYT_RS18145 | | ATP-dependent DNA helicase RecQ | 0.65 | BPHYT_RS06905 | | excinuclease ABC subunit B | low | > 109 |
| Paraburkholderia sabiae LMG 24235 | 0.42 | QEN71_RS28295 | | DNA helicase RecQ | 0.65 | QEN71_RS23870 | | excinuclease ABC subunit UvrB | low | > 153 |
| Phaeobacter inhibens DSM 17395 | 0.42 | PGA1_c31900 | | ATP-dependent DNA helicase RecQ | 0.59 | PGA1_c26160 | | uvrABC system protein B | low | > 62 |
| Paraburkholderia graminis OAS925 | 0.42 | ABIE53_003792 | | ATP-dependent DNA helicase RecQ | 0.65 | ABIE53_001645 | | excinuclease ABC subunit B | low | > 113 |
| Azospirillum sp. SherDot2 | 0.42 | MPMX19_00123 | | ATP-dependent DNA helicase RecQ | 0.59 | MPMX19_01038 | | UvrABC system protein B | 0.43 | 51 |
| Ralstonia solanacearum IBSBF1503 | 0.41 | RALBFv3_RS07220 | | DNA helicase RecQ | 0.67 | RALBFv3_RS14225 | | excinuclease ABC subunit UvrB | low | > 76 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.41 | BT1848 | | ATP-dependent DNA helicase recQ (NCBI ptt file) | 0.51 | BT0570 | | excinuclease ABC subunit B (NCBI ptt file) | low | > 81 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.41 | H281DRAFT_06595 | | ATP-dependent DNA helicase RecQ | 0.65 | H281DRAFT_04973 | | Excinuclease ABC subunit B | — | — |
| Ralstonia solanacearum UW163 | 0.41 | UW163_RS06400 | | DNA helicase RecQ | 0.67 | UW163_RS11690 | | excinuclease ABC subunit UvrB | — | — |
| Bacteroides ovatus ATCC 8483 | 0.41 | BACOVA_04594 | | ATP-dependent DNA helicase RecQ | 0.51 | BACOVA_03714 | | excinuclease ABC, B subunit | low | > 94 |
| Dinoroseobacter shibae DFL-12 | 0.41 | Dshi_3334 | | ATP-dependent DNA helicase RecQ (RefSeq) | 0.59 | Dshi_2192 | | excinuclease ABC, B subunit (RefSeq) | 0.67 | 2 |
| Ralstonia solanacearum GMI1000 | 0.41 | RS_RS15155 | | DNA helicase RecQ | 0.66 | RS_RS05005 | | UvrABC system protein B | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.41 | RPSI07_RS10025 | | DNA helicase RecQ | 0.67 | RPSI07_RS19240 | | excinuclease ABC subunit UvrB | 0.55 | 43 |
| Lysobacter sp. OAE881 | 0.41 | ABIE51_RS05145 | | DNA helicase RecQ | 0.68 | ABIE51_RS15310 | | excinuclease ABC subunit UvrB | low | > 62 |
| Castellaniella sp019104865 MT123 | 0.41 | ABCV34_RS07985 | | DNA helicase RecQ | 0.64 | ABCV34_RS05110 | | excinuclease ABC subunit UvrB | low | > 48 |
| Acidovorax sp. GW101-3H11 | 0.41 | Ac3H11_3308 | | ATP-dependent DNA helicase RecQ | 0.64 | Ac3H11_4114 | | Excinuclease ABC subunit B | 0.60 | 13 |
| Parabacteroides merdae CL09T00C40 | 0.41 | HMPREF1078_RS01195 | | DNA helicase RecQ | 0.57 | HMPREF1078_RS15855 | | excinuclease ABC subunit UvrB | low | > 61 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.40 | GFF1958 | | ATP-dependent DNA helicase RecQ | 0.64 | GFF4962 | | Excinuclease ABC subunit B | low | > 90 |
| Variovorax sp. SCN45 | 0.40 | GFF6415 | | ATP-dependent DNA helicase RecQ | 0.63 | GFF945 | | Excinuclease ABC subunit B | low | > 127 |
| Rhodospirillum rubrum S1H | 0.40 | Rru_A0089 | | ATP-dependent DNA helicase RecQ (NCBI) | 0.59 | Rru_A1133 | | Excinuclease ABC, B subunit (NCBI) | 0.64 | 28 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.38 | CA265_RS08905 | | DNA helicase RecQ | 0.56 | CA265_RS19430 | | excinuclease ABC subunit B | low | > 88 |
| Sphingomonas koreensis DSMZ 15582 | 0.37 | Ga0059261_2261 | | ATP-dependent DNA helicase RecQ | 0.59 | Ga0059261_3779 | | Excinuclease ABC subunit B | 0.31 | 30 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.36 | A4249_RS14575 | | DNA helicase RecQ | 0.58 | A4249_RS00555 | | excinuclease ABC subunit UvrB | low | > 48 |
| Fusobacterium nucleatum SB010 | 0.34 | HUW76_07235 | | DNA helicase RecQ | 0.55 | HUW76_02625 | | excinuclease ABC subunit UvrB | low | > 35 |
| Bifidobacterium breve UCC2003 | 0.34 | BBR_RS13150 | | DNA helicase RecQ | 0.52 | BBR_RS14285 | | excinuclease ABC subunit UvrB | low | > 34 |
| Caulobacter crescentus NA1000 | 0.33 | CCNA_03578 | | ATP-dependent DNA helicase recQ | 0.60 | CCNA_03076 | | excinuclease ABC subunit B | 0.73 | 8 |
| Caulobacter crescentus NA1000 Δfur | 0.33 | CCNA_03578 | | ATP-dependent DNA helicase recQ | 0.60 | CCNA_03076 | | excinuclease ABC subunit B | low | > 67 |
Not shown: 5 genomes with orthologs for b3822 only; 8 genomes with orthologs for b0779 only