Conservation of cofitness between b3960 and b0004 in Escherichia coli BW25113

91 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b3960 argH argininosuccinate lyase (NCBI) 1.0 b0004 thrC threonine synthase (NCBI) 0.95 5
Escherichia coli BL21 1.00 ECD_03845 argininosuccinate lyase 1.00 ECD_00004 L-threonine synthase 0.90 8
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_04090 Argininosuccinate lyase 1.00 OHPLBJKB_03656 Threonine synthase low > 73
Escherichia coli ECOR38 1.00 HEPCGN_12220 argH argininosuccinate lyase 0.99 HEPCGN_09105 thrC threonine synthase 0.94 51
Escherichia coli Nissle 1917 0.99 ECOLIN_RS22855 argininosuccinate lyase 0.99 ECOLIN_RS00020 threonine synthase low > 55
Escherichia fergusonii Becca 0.99 EFB2_04654 Argininosuccinate lyase 1.00 EFB2_04039 Threonine synthase low > 86
Escherichia coli ECOR27 0.99 NOLOHH_05720 argH argininosuccinate lyase 1.00 NOLOHH_03430 thrC threonine synthase 0.90 40
Escherichia coli ECRC62 0.99 BNILDI_05805 argH argininosuccinate lyase 1.00 BNILDI_08170 thrC threonine synthase 0.84 75
Escherichia coli ECRC98 0.99 JDDGAC_17200 argH argininosuccinate lyase 1.00 JDDGAC_14695 thrC threonine synthase 0.88 35
Escherichia coli ECRC100 0.99 OKFHMN_13575 argH argininosuccinate lyase 1.00 OKFHMN_11100 thrC threonine synthase 0.97 8
Escherichia coli ECRC99 0.99 KEDOAH_14585 argH argininosuccinate lyase 1.00 KEDOAH_17055 thrC threonine synthase
Escherichia coli ECRC101 0.99 MCAODC_04075 argH argininosuccinate lyase 1.00 MCAODC_01615 thrC threonine synthase 0.88 30
Escherichia coli ECRC102 0.99 NIAGMN_11325 argH argininosuccinate lyase 1.00 NIAGMN_08950 thrC threonine synthase
Klebsiella michiganensis M5al 0.96 BWI76_RS00855 argininosuccinate lyase 0.92 BWI76_RS04255 threonine synthase 0.94 6
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.95 GFF2346 Argininosuccinate lyase (EC 4.3.2.1) 0.91 GFF1080 Threonine synthase (EC 4.2.3.1) low > 78
Enterobacter asburiae PDN3 0.94 EX28DRAFT_4422 argininosuccinate lyase 0.93 EX28DRAFT_3616 threonine synthase low > 76
Enterobacter sp. TBS_079 0.93 MPMX20_04520 Argininosuccinate lyase 0.93 MPMX20_00712 Threonine synthase 0.92 12
Serratia liquefaciens MT49 0.88 IAI46_24500 argininosuccinate lyase 0.84 IAI46_03040 threonine synthase 0.91 6
Rahnella sp. WP5 0.88 EX31_RS14180 argininosuccinate lyase 0.85 EX31_RS03935 threonine synthase 0.99 4
Pantoea sp. MT58 0.88 IAI47_00920 argininosuccinate lyase 0.81 IAI47_16205 threonine synthase 0.94 29
Erwinia tracheiphila SCR3 0.88 LU632_RS19600 argH argininosuccinate lyase 0.79 LU632_RS02620 thrC threonine synthase
Dickeya dadantii 3937 0.86 DDA3937_RS20340 argininosuccinate lyase 0.80 DDA3937_RS18405 threonine synthase 0.68 55
Pectobacterium carotovorum WPP14 0.86 HER17_RS20620 argininosuccinate lyase 0.79 HER17_RS02805 threonine synthase 0.69 70
Dickeya dianthicola 67-19 0.84 HGI48_RS00885 argininosuccinate lyase 0.79 HGI48_RS18335 threonine synthase low > 71
Dickeya dianthicola ME23 0.84 DZA65_RS00945 argininosuccinate lyase 0.80 DZA65_RS19475 threonine synthase 0.66 42
Vibrio cholerae E7946 ATCC 55056 0.74 CSW01_13360 argininosuccinate lyase 0.68 CSW01_11965 threonine synthase low > 62
Shewanella amazonensis SB2B 0.65 Sama_0260 argininosuccinate lyase (RefSeq) 0.55 Sama_0907 threonine synthase (RefSeq) 0.93 29
Shewanella sp. ANA-3 0.63 Shewana3_3901 argininosuccinate lyase (RefSeq) 0.56 Shewana3_1141 threonine synthase (RefSeq) 0.87 28
Shewanella oneidensis MR-1 0.63 SO0279 argH argininosuccinate lyase (NCBI ptt file) 0.55 SO3413 thrC threonine synthase (NCBI ptt file) 0.94 26
Shewanella loihica PV-4 0.62 Shew_0206 argininosuccinate lyase (RefSeq) 0.58 Shew_1081 threonine synthase (RefSeq) 0.98 11
Alteromonas macleodii MIT1002 0.57 MIT1002_00467 Argininosuccinate lyase 0.65 MIT1002_03084 Threonine synthase 0.97 29
Pseudomonas fluorescens GW456-L13 0.48 PfGW456L13_854 Argininosuccinate lyase (EC 4.3.2.1) 0.27 PfGW456L13_1724 Threonine synthase (EC 4.2.3.1)
Pseudomonas fluorescens FW300-N1B4 0.48 Pf1N1B4_2183 Argininosuccinate lyase (EC 4.3.2.1) 0.27 Pf1N1B4_3014 Threonine synthase (EC 4.2.3.1)
Marinobacter adhaerens HP15 0.47 HP15_243 argininosuccinate lyase 0.25 HP15_765 threonine synthase
Pseudomonas fluorescens FW300-N2E3 0.47 AO353_09000 argininosuccinate lyase 0.28 AO353_04350 threonine synthase
Pseudomonas sp. RS175 0.47 PFR28_04367 Argininosuccinate lyase 0.27 PFR28_00334 Threonine synthase
Pseudomonas simiae WCS417 0.47 PS417_27540 argininosuccinate lyase 0.27 PS417_22880 threonine synthase
Pseudomonas syringae pv. syringae B728a 0.47 Psyr_0065 argininosuccinate lyase 0.28 Psyr_1291 L-threonine synthase
Pseudomonas fluorescens FW300-N2E2 0.47 Pf6N2E2_4429 Argininosuccinate lyase (EC 4.3.2.1) 0.28 Pf6N2E2_3142 Threonine synthase (EC 4.2.3.1)
Pseudomonas sp. S08-1 0.47 OH686_13885 argininosuccinate lyase 0.27 OH686_17765 threonine synthase low > 80
Pseudomonas syringae pv. syringae B728a ΔmexB 0.47 Psyr_0065 argininosuccinate lyase 0.28 Psyr_1291 L-threonine synthase
Pseudomonas fluorescens FW300-N2C3 0.47 AO356_12780 argininosuccinate lyase 0.28 AO356_06370 threonine synthase
Pseudomonas fluorescens SBW25 0.47 PFLU_RS29220 argininosuccinate lyase 0.27 PFLU_RS24545 threonine synthase
Pseudomonas fluorescens SBW25-INTG 0.47 PFLU_RS29220 argininosuccinate lyase 0.27 PFLU_RS24545 threonine synthase
Pseudomonas putida KT2440 0.46 PP_0184 Argininosuccinate lyase 0.27 PP_1471 Threonine synthase
Pseudomonas stutzeri RCH2 0.46 Psest_3751 argininosuccinate lyase 0.28 Psest_3125 threonine synthase
Azospirillum sp. SherDot2 0.45 MPMX19_05817 Argininosuccinate lyase 0.26 MPMX19_00671 Threonine synthase
Azospirillum brasilense Sp245 0.45 AZOBR_RS16935 argininosuccinate lyase 0.26 AZOBR_RS10545 threonine synthase
Phaeobacter inhibens DSM 17395 0.44 PGA1_c03450 argininosuccinate lyase ArgH 0.26 PGA1_c06310 threonine synthase ThrC
Castellaniella sp019104865 MT123 0.44 ABCV34_RS03060 argininosuccinate lyase 0.24 ABCV34_RS02300 threonine synthase
Sinorhizobium meliloti 1021 0.44 SMc00725 argininosuccinate lyase 0.26 SMc00077 threonine synthase
Dechlorosoma suillum PS 0.44 Dsui_0111 argininosuccinate lyase 0.21 Dsui_2904 threonine synthase
Acidovorax sp. GW101-3H11 0.44 Ac3H11_1632 Argininosuccinate lyase (EC 4.3.2.1) 0.22 Ac3H11_1505 Threonine synthase (EC 4.2.3.1)
Rhizobium sp. OAE497 0.44 ABIE40_RS17520 argininosuccinate lyase 0.25 ABIE40_RS04230 threonine synthase
Agrobacterium fabrum C58 0.44 Atu3599 argininosuccinate lyase 0.25 Atu0787 threonine synthase
Variovorax sp. SCN45 0.44 GFF3824 Argininosuccinate lyase (EC 4.3.2.1) 0.22 GFF2800 Threonine synthase (EC 4.2.3.1)
Variovorax sp. OAS795 0.44 ABID97_RS08190 argininosuccinate lyase 0.23 ABID97_RS25760 threonine synthase
Bosea sp. OAE506 0.44 ABIE41_RS08750 argininosuccinate lyase 0.28 ABIE41_RS22985 threonine synthase
Herbaspirillum seropedicae SmR1 0.43 HSERO_RS14685 argininosuccinate lyase 0.22 HSERO_RS10470 threonine synthase
Hydrogenophaga sp. GW460-11-11-14-LB1 0.43 GFF736 Argininosuccinate lyase (EC 4.3.2.1) 0.22 GFF3936 Threonine synthase (EC 4.2.3.1)
Rhodopseudomonas palustris CGA009 0.42 TX73_024645 argininosuccinate lyase 0.25 TX73_004325 threonine synthase
Ralstonia sp. UNC404CL21Col 0.42 ABZR87_RS16170 argininosuccinate lyase 0.21 ABZR87_RS05865 threonine synthase low > 80
Ralstonia solanacearum GMI1000 0.42 RS_RS11865 argininosuccinate lyase 0.21 RS_RS06660 threonine synthase
Burkholderia phytofirmans PsJN 0.42 BPHYT_RS05210 argininosuccinate lyase 0.21 BPHYT_RS08960 threonine synthase
Dinoroseobacter shibae DFL-12 0.42 Dshi_3062 argininosuccinate lyase (RefSeq) 0.26 Dshi_1146 threonine synthase (RefSeq)
Paraburkholderia bryophila 376MFSha3.1 0.42 H281DRAFT_00194 argininosuccinate lyase 0.21 H281DRAFT_00811 L-threonine synthase
Ralstonia solanacearum IBSBF1503 0.42 RALBFv3_RS04280 argininosuccinate lyase 0.20 RALBFv3_RS15880 threonine synthase
Ralstonia solanacearum UW163 0.42 UW163_RS09390 argininosuccinate lyase 0.20 UW163_RS13325 threonine synthase
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS15925 argininosuccinate lyase 0.22 RR42_RS12535 threonine synthase
Paraburkholderia graminis OAS925 0.42 ABIE53_001311 argininosuccinate lyase 0.22 ABIE53_002027 threonine synthase
Rhodospirillum rubrum S1H 0.41 Rru_A0397 Argininosuccinate lyase (NCBI) 0.25 Rru_A3233 Threonine synthase (NCBI)
Paraburkholderia sabiae LMG 24235 0.41 QEN71_RS24970 argininosuccinate lyase 0.21 QEN71_RS22400 threonine synthase 0.87 23
Ralstonia solanacearum PSI07 0.41 RPSI07_RS13080 argininosuccinate lyase 0.20 RPSI07_RS17485 threonine synthase
Magnetospirillum magneticum AMB-1 0.41 AMB_RS22715 argininosuccinate lyase 0.25 AMB_RS17140 threonine synthase
Caulobacter crescentus NA1000 Δfur 0.40 CCNA_02294 argininosuccinate lyase 0.29 CCNA_03510 threonine synthase
Caulobacter crescentus NA1000 0.40 CCNA_02294 argininosuccinate lyase 0.29 CCNA_03510 threonine synthase
Sphingomonas koreensis DSMZ 15582 0.40 Ga0059261_2049 argininosuccinate lyase 0.23 Ga0059261_1999 threonine synthase 0.97 12
Brevundimonas sp. GW460-12-10-14-LB2 0.39 A4249_RS12555 argininosuccinate lyase 0.24 A4249_RS00020 threonine synthase 0.99 19
Bifidobacterium breve UCC2003 0.34 BBR_RS13955 argininosuccinate lyase 0.20 BBR_RS14070 threonine synthase low > 34
Pedobacter sp. GW460-11-11-14-LB5 0.26 CA265_RS18485 arginosuccinate lyase (EC 4.3.2.1) (from data) 0.40 CA265_RS23465 threonine synthase 0.87 48
Echinicola vietnamensis KMM 6221, DSM 17526 0.25 Echvi_3852 arginosuccinate lyase (EC 4.3.2.1) (from data) 0.40 Echvi_2002 threonine synthase 0.94 7
Phocaeicola dorei CL03T12C01 0.25 ABI39_RS07095 argininosuccinate lyase 0.42 ABI39_RS10440 threonine synthase 0.88 13
Phocaeicola vulgatus CL09T03C04 0.25 HMPREF1058_RS09585 argininosuccinate lyase 0.42 HMPREF1058_RS14730 threonine synthase 0.72 16
Mucilaginibacter yixingensis YX-36 DSM 26809 0.25 ABZR88_RS12070 argininosuccinate lyase 0.40 ABZR88_RS18960 threonine synthase
Bacteroides ovatus ATCC 8483 0.24 BACOVA_03551 argininosuccinate lyase 0.41 BACOVA_03023 threonine synthase 0.95 11
Bacteroides stercoris CC31F 0.24 HMPREF1181_RS03410 argininosuccinate lyase 0.41 HMPREF1181_RS00050 threonine synthase 0.99 6
Lysobacter sp. OAE881 0.22 ABIE51_RS13380 argininosuccinate lyase 0.30 ABIE51_RS17530 threonine synthase 0.94 15
Rhodanobacter denitrificans FW104-10B01 0.20 LRK54_RS02380 argininosuccinate lyase 0.28 LRK54_RS10355 threonine synthase low > 59
Rhodanobacter sp. FW510-T8 0.20 OKGIIK_09430 argH argininosuccinate lyase 0.28 OKGIIK_13570 thrC threonine synthase low > 52
Rhodanobacter denitrificans MT42 0.20 LRK55_RS02135 argininosuccinate lyase 0.28 LRK55_RS09995 threonine synthase low > 63
Dyella japonica UNC79MFTsu3.2 0.20 ABZR86_RS08695 arginosuccinate lyase (EC 4.3.2.1) (from data) 0.28 ABZR86_RS15975 threonine synthase (EC 4.2.3.1) (from data) 0.95 12
Xanthomonas campestris pv. campestris strain 8004 0.19 Xcc-8004.2323.1 Argininosuccinate lyase (EC 4.3.2.1) 0.31 Xcc-8004.2954.1 Threonine synthase (EC 4.2.3.1) 0.95 6

Not shown: 9 genomes with orthologs for b3960 only; 2 genomes with orthologs for b0004 only