Conservation of cofitness between Rru_A2161 and Rru_A1854 in Rhodospirillum rubrum S1H

94 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rhodospirillum rubrum S1H 1.0 Rru_A2161 Polyphosphate kinase (NCBI) 1.0 Rru_A1854 Pyridoxal phosphate biosynthetic protein PdxJ (NCBI) 0.57 17
Magnetospirillum magneticum AMB-1 0.63 AMB_RS14295 RNA degradosome polyphosphate kinase 0.69 AMB_RS11405 pyridoxine 5'-phosphate synthase — —
Azospirillum brasilense Sp245 0.60 AZOBR_RS16235 polyphosphate kinase 0.67 AZOBR_RS22055 pyridoxine 5'-phosphate synthase low > 97
Azospirillum sp. SherDot2 0.60 MPMX19_01149 Polyphosphate kinase 0.73 MPMX19_00840 Pyridoxine 5'-phosphate synthase low > 112
Caulobacter crescentus NA1000 0.57 CCNA_01782 polyphosphate kinase 1 0.59 CCNA_01626 pyridoxal phosphate biosynthetic protein pdxJ — —
Caulobacter crescentus NA1000 Δfur 0.57 CCNA_01782 polyphosphate kinase 1 0.59 CCNA_01626 pyridoxal phosphate biosynthetic protein pdxJ — —
Bosea sp. OAE506 0.56 ABIE41_RS16125 RNA degradosome polyphosphate kinase 0.58 ABIE41_RS19905 pyridoxine 5'-phosphate synthase low > 77
Rhodopseudomonas palustris CGA009 0.56 TX73_015770 RNA degradosome polyphosphate kinase 0.55 TX73_013960 pyridoxine 5'-phosphate synthase 0.48 51
Agrobacterium fabrum C58 0.55 Atu1144 polyphosphate kinase 0.24 Atu2024 pyridoxal phosphate biosynthesis protein — —
Rhizobium sp. OAE497 0.54 ABIE40_RS06575 RNA degradosome polyphosphate kinase 0.23 ABIE40_RS11420 pyridoxine 5'-phosphate synthase — —
Sinorhizobium meliloti 1021 0.54 SMc00618 polyphosphate kinase 0.23 SMc01407 pyridoxine 5'-phosphate synthase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.54 A4249_RS08195 RNA degradosome polyphosphate kinase 0.53 A4249_RS05520 pyridoxine 5'-phosphate synthase — —
Dinoroseobacter shibae DFL-12 0.53 Dshi_0740 Polyphosphate kinase (RefSeq) 0.63 Dshi_0196 pyridoxal phosphate biosynthetic protein PdxJ (RefSeq) — —
Sphingomonas koreensis DSMZ 15582 0.51 Ga0059261_0225 polyphosphate kinase 1 0.62 Ga0059261_2011 pyridoxine 5'-phosphate synthase — —
Synechococcus elongatus PCC 7942 0.37 Synpcc7942_1566 ppk polyphosphate kinase 0.43 Synpcc7942_1194 pdxJ pyridoxal phosphate biosynthetic protein PdxJ — —
Pseudomonas sp. S08-1 0.36 OH686_13995 polyphosphate kinase 1 0.46 OH686_20095 pyridoxine 5'-phosphate synthase — —
Pseudomonas stutzeri RCH2 0.36 Psest_3732 polyphosphate kinase 1 0.46 Psest_3089 pyridoxine 5'-phosphate synthase — —
Rhodanobacter denitrificans FW104-10B01 0.35 LRK54_RS16000 polyphosphate kinase 1 0.28 LRK54_RS08440 pyridoxine 5'-phosphate synthase — —
Acinetobacter radioresistens SK82 0.35 MPMX26_02335 Polyphosphate kinase 0.50 MPMX26_02152 Pyridoxine 5'-phosphate synthase — —
Rhodanobacter sp. FW510-T8 0.35 OKGIIK_08995 ppk1 RNA degradosome polyphosphate kinase 0.27 OKGIIK_15220 pyridoxine 5'-phosphate synthase — —
Rhodanobacter denitrificans MT42 0.35 LRK55_RS15755 polyphosphate kinase 1 0.27 LRK55_RS08205 pyridoxine 5'-phosphate synthase — —
Pseudomonas fluorescens FW300-N2E2 0.35 Pf6N2E2_4453 Polyphosphate kinase (EC 2.7.4.1) 0.47 Pf6N2E2_5429 Pyridoxine 5'-phosphate synthase (EC 2.6.99.2) — —
Pseudomonas simiae WCS417 0.35 PS417_27435 polyphosphate kinase 0.47 PS417_05205 pyridoxine 5'-phosphate synthase — —
Pseudomonas fluorescens SBW25 0.35 PFLU_RS29095 polyphosphate kinase 1 0.47 PFLU_RS05275 pyridoxine 5'-phosphate synthase — —
Pseudomonas fluorescens SBW25-INTG 0.35 PFLU_RS29095 polyphosphate kinase 1 0.47 PFLU_RS05275 pyridoxine 5'-phosphate synthase — —
Pseudomonas putida KT2440 0.35 PP_5217 Polyphosphate kinase 0.48 PP_1436 Pyridoxine 5'-phosphate synthase — —
Pseudomonas fluorescens FW300-N2E3 0.35 AO353_08885 polyphosphate kinase 0.47 AO353_04495 pyridoxine 5'-phosphate synthase — —
Pseudomonas fluorescens FW300-N1B4 0.35 Pf1N1B4_2208 Polyphosphate kinase (EC 2.7.4.1) 0.48 Pf1N1B4_889 Pyridoxine 5'-phosphate synthase (EC 2.6.99.2) — —
Dyella japonica UNC79MFTsu3.2 0.34 ABZR86_RS07490 polyphosphate kinase 1 0.27 ABZR86_RS15180 pyridoxine 5'-phosphate synthase — —
Pseudomonas fluorescens GW456-L13 0.34 PfGW456L13_874 Polyphosphate kinase (EC 2.7.4.1) 0.47 PfGW456L13_4837 Pyridoxine 5'-phosphate synthase (EC 2.6.99.2) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.34 Psyr_0293 Polyphosphate kinase 0.47 Psyr_3948 pyridoxine 5'-phosphate synthase — —
Pseudomonas syringae pv. syringae B728a 0.34 Psyr_0293 Polyphosphate kinase 0.47 Psyr_3948 pyridoxine 5'-phosphate synthase — —
Pseudomonas sp. RS175 0.34 PFR28_04345 Polyphosphate kinase 0.48 PFR28_03520 'Pyridoxine 5'-phosphate synthase' transl_table=11 — —
Pseudomonas fluorescens FW300-N2C3 0.34 AO356_12895 polyphosphate kinase 0.47 AO356_17510 pyridoxine 5'-phosphate synthase — —
Dechlorosoma suillum PS 0.34 Dsui_2814 polyphosphate kinase 1 0.45 Dsui_2463 pyridoxine 5''-phosphate synthase — —
Herbaspirillum seropedicae SmR1 0.34 HSERO_RS06305 polyphosphate kinase 0.45 HSERO_RS09675 pyridoxine 5'-phosphate synthase — —
Burkholderia phytofirmans PsJN 0.33 BPHYT_RS14110 polyphosphate kinase 0.49 BPHYT_RS14355 pyridoxine 5'-phosphate synthase — —
Paraburkholderia graminis OAS925 0.33 ABIE53_002988 polyphosphate kinase 0.48 ABIE53_003033 pyridoxine 5-phosphate synthase — —
Cupriavidus basilensis FW507-4G11 0.33 RR42_RS13435 polyphosphate kinase 0.48 RR42_RS14025 pyridoxine 5'-phosphate synthase — —
Paraburkholderia sabiae LMG 24235 0.33 QEN71_RS04860 polyphosphate kinase 1 0.50 QEN71_RS04625 pyridoxine 5'-phosphate synthase — —
Paraburkholderia bryophila 376MFSha3.1 0.33 H281DRAFT_04418 polyphosphate kinase 0.48 H281DRAFT_04365 pyridoxine 5'-phosphate synthase — —
Kangiella aquimarina DSM 16071 0.33 B158DRAFT_2312 polyphosphate kinase 1 0.55 B158DRAFT_2190 pyridoxine 5'-phosphate synthase — —
Marinobacter adhaerens HP15 0.32 HP15_3334 polyphosphate kinase 0.49 HP15_787 pyridoxal phosphate biosynthetic protein PdxJ — —
Ralstonia sp. UNC404CL21Col 0.32 ABZR87_RS14065 polyphosphate kinase 1 0.44 ABZR87_RS10220 pyridoxine 5'-phosphate synthase — —
Ralstonia solanacearum PSI07 0.31 RPSI07_RS15330 polyphosphate kinase 1 0.47 RPSI07_RS18960 pyridoxine 5'-phosphate synthase — —
Ralstonia solanacearum IBSBF1503 0.31 RALBFv3_RS02115 polyphosphate kinase 1 0.47 RALBFv3_RS14500 pyridoxine 5'-phosphate synthase — —
Ralstonia solanacearum UW163 0.31 UW163_RS15425 polyphosphate kinase 1 0.47 UW163_RS11965 pyridoxine 5'-phosphate synthase — —
Lysobacter sp. OAE881 0.31 ABIE51_RS14230 polyphosphate kinase 1 0.25 ABIE51_RS00810 pyridoxine 5'-phosphate synthase — —
Ralstonia solanacearum GMI1000 0.31 RS_RS07705 polyphosphate kinase 1 0.47 RS_RS05280 pyridoxine 5'-phosphate synthase — —
Castellaniella sp019104865 MT123 0.31 ABCV34_RS15580 polyphosphate kinase 1 0.41 ABCV34_RS04215 pyridoxine 5'-phosphate synthase — —
Xanthomonas campestris pv. campestris strain 8004 0.31 Xcc-8004.4064.1 Polyphosphate kinase (EC 2.7.4.1) 0.25 Xcc-8004.17.1 Pyridoxine 5'-phosphate synthase (EC 2.6.99.2) low > 74
Variovorax sp. SCN45 0.30 GFF1089 Polyphosphate kinase (EC 2.7.4.1) 0.22 GFF3873 Pyridoxine 5'-phosphate synthase (EC 2.6.99.2) — —
Variovorax sp. OAS795 0.30 ABID97_RS14575 polyphosphate kinase 1 0.22 ABID97_RS08380 pyridoxine 5'-phosphate synthase — —
Acidovorax sp. GW101-3H11 0.30 Ac3H11_452 Polyphosphate kinase (EC 2.7.4.1) 0.27 Ac3H11_1563 Pyridoxine 5'-phosphate synthase (EC 2.6.99.2) — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.29 GFF4226 Polyphosphate kinase (EC 2.7.4.1) 0.25 GFF3349 Pyridoxine 5'-phosphate synthase (EC 2.6.99.2) — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.28 CA264_11200 RNA degradosome polyphosphate kinase 0.29 CA264_15275 pyridoxine 5'-phosphate synthase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.27 Echvi_2996 polyphosphate kinase 1 0.30 Echvi_0661 pyridoxine 5'-phosphate synthase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.26 ABZR88_RS04845 polyphosphate kinase 1 0.28 ABZR88_RS01795 pyridoxine 5'-phosphate synthase — —
Enterobacter sp. TBS_079 0.24 MPMX20_03356 Polyphosphate kinase 0.53 MPMX20_03435 Pyridoxine 5'-phosphate synthase low > 85
Parabacteroides merdae CL09T00C40 0.24 HMPREF1078_RS16770 RNA degradosome polyphosphate kinase 0.27 HMPREF1078_RS10265 pyridoxine 5'-phosphate synthase low > 61
Escherichia coli BL21 0.24 ECD_02393 polyphosphate kinase, component of RNA degradosome 0.54 ECD_02458 pyridoxine 5'-phosphate synthase — —
Escherichia coli ECRC98 0.24 JDDGAC_25745 ppk1 polyphosphate kinase 1 0.54 JDDGAC_25090 pdxJ pyridoxine 5'-phosphate synthase — —
Escherichia coli ECRC100 0.24 OKFHMN_21800 ppk1 polyphosphate kinase 1 0.54 OKFHMN_21425 pdxJ pyridoxine 5'-phosphate synthase low > 80
Escherichia coli BW25113 0.24 b2501 ppk polyphosphate kinase (NCBI) 0.54 b2564 pdxJ pyridoxal phosphate biosynthetic protein (NCBI) low > 76
Escherichia coli ECOR27 0.24 NOLOHH_13450 ppk1 polyphosphate kinase 1 0.54 NOLOHH_13100 pdxJ pyridoxine 5'-phosphate synthase low > 75
Escherichia coli ECOR38 0.24 HEPCGN_20965 ppk1 polyphosphate kinase 1 0.54 HEPCGN_20570 pdxJ pyridoxine 5'-phosphate synthase low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.24 OHPLBJKB_01225 Polyphosphate kinase 0.54 OHPLBJKB_01143 'Pyridoxine 5'-phosphate synthase' transl_table=11 low > 73
Bacteroides stercoris CC31F 0.24 HMPREF1181_RS08035 RNA degradosome polyphosphate kinase 0.30 HMPREF1181_RS06645 pyridoxine 5'-phosphate synthase — —
Escherichia coli ECRC102 0.24 NIAGMN_19570 ppk1 polyphosphate kinase 1 0.54 NIAGMN_19195 pdxJ pyridoxine 5'-phosphate synthase — —
Escherichia coli ECRC101 0.24 MCAODC_12330 ppk1 polyphosphate kinase 1 0.54 MCAODC_11955 pdxJ pyridoxine 5'-phosphate synthase low > 87
Escherichia coli ECRC62 0.24 BNILDI_12260 ppk1 polyphosphate kinase 1 0.54 BNILDI_11900 pdxJ pyridoxine 5'-phosphate synthase low > 75
Escherichia fergusonii Becca 0.24 EFB2_01397 Polyphosphate kinase 0.53 EFB2_01332 Pyridoxine 5'-phosphate synthase low > 86
Escherichia coli Nissle 1917 0.24 ECOLIN_RS14200 polyphosphate kinase 1 0.54 ECOLIN_RS14515 pyridoxine 5'-phosphate synthase — —
Escherichia coli ECRC99 0.24 KEDOAH_06420 ppk1 polyphosphate kinase 1 0.53 KEDOAH_06795 pdxJ pyridoxine 5'-phosphate synthase — —
Pantoea sp. MT58 0.24 IAI47_05155 polyphosphate kinase 1 0.54 IAI47_04895 pyridoxine 5'-phosphate synthase low > 76
Klebsiella michiganensis M5al 0.24 BWI76_RS20995 RNA degradosome polyphosphate kinase 0.53 BWI76_RS21305 pyridoxine 5'-phosphate synthase — —
Enterobacter asburiae PDN3 0.24 EX28DRAFT_0166 polyphosphate kinase 1 0.54 EX28DRAFT_0082 pyridoxine 5'-phosphate synthase — —
Vibrio cholerae E7946 ATCC 55056 0.24 CSW01_03780 polyphosphate kinase 1 0.53 CSW01_12440 pyridoxine 5'-phosphate synthase — —
Pedobacter sp. GW460-11-11-14-LB5 0.24 CA265_RS09830 polyphosphate kinase 1 0.27 CA265_RS25170 pyridoxine 5'-phosphate synthase — —
Pectobacterium carotovorum WPP14 0.24 HER17_RS06425 polyphosphate kinase 1 0.55 HER17_RS05830 pyridoxine 5'-phosphate synthase low > 75
Rahnella sp. WP5 0.24 EX31_RS22680 polyphosphate kinase 1 0.55 EX31_RS21850 pyridoxine 5'-phosphate synthase low > 89
Serratia liquefaciens MT49 0.24 IAI46_18915 polyphosphate kinase 1 0.55 IAI46_19535 pyridoxine 5'-phosphate synthase — —
Alteromonas macleodii MIT1002 0.23 MIT1002_00872 Polyphosphate kinase 0.51 MIT1002_00791 Pyridoxine 5'-phosphate synthase — —
Phocaeicola dorei CL03T12C01 0.23 ABI39_RS14955 RNA degradosome polyphosphate kinase 0.29 ABI39_RS02500 pyridoxine 5'-phosphate synthase low > 72
Erwinia tracheiphila SCR3 0.23 LU632_RS08260 ppk1 polyphosphate kinase 1 0.56 LU632_RS15370 pdxJ pyridoxine 5'-phosphate synthase — —
Dickeya dadantii 3937 0.23 DDA3937_RS15150 polyphosphate kinase 1 0.55 DDA3937_RS15720 pyridoxine 5'-phosphate synthase low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.23 GFF2167 Polyphosphate kinase (EC 2.7.4.1) 0.53 GFF2472 'Pyridoxine 5'-phosphate synthase (EC 2.6.99.2)' transl_table=11 — —
Dickeya dianthicola ME23 0.23 DZA65_RS16045 polyphosphate kinase 1 0.55 DZA65_RS16885 pyridoxine 5'-phosphate synthase low > 75
Shewanella loihica PV-4 0.23 Shew_3079 polyphosphate kinase (RefSeq) 0.45 Shew_1057 pyridoxal phosphate biosynthetic protein PdxJ (RefSeq) — —
Shewanella amazonensis SB2B 0.23 Sama_2011 polyphosphate kinase (RefSeq) 0.46 Sama_0883 pyridoxine 5'-phosphate synthase (RefSeq) — —
Dickeya dianthicola 67-19 0.23 HGI48_RS15225 polyphosphate kinase 1 0.56 HGI48_RS15805 pyridoxine 5'-phosphate synthase low > 71
Phocaeicola vulgatus CL09T03C04 0.23 HMPREF1058_RS02340 RNA degradosome polyphosphate kinase 0.29 HMPREF1058_RS08325 pyridoxine 5'-phosphate synthase low > 67
Bacteroides thetaiotaomicron VPI-5482 0.23 BT0541 Polyphosphate kinase (NCBI ptt file) 0.29 BT3918 pyridoxal phosphate biosynthetic protein pdxJ (NCBI ptt file) low > 81
Shewanella sp. ANA-3 0.22 Shewana3_2417 polyphosphate kinase (RefSeq) 0.46 Shewana3_3023 pyridoxine 5'-phosphate synthase (RefSeq) — —
Bacteroides ovatus ATCC 8483 0.22 BACOVA_01446 polyphosphate kinase 1 0.29 BACOVA_01142 pyridoxine 5'-phosphate synthase low > 94

Not shown: 2 genomes with orthologs for Rru_A2161 only; 4 genomes with orthologs for Rru_A1854 only