Homologs of Psyr_3437 from Pseudomonas syringae pv. syringae B728a

RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG
SEED: RNA polymerase sigma factor for flagellar operon
KEGG: RNA polymerase sigma factor for flagellar operon FliA

Top 100 hits from BLASTp (E < 0.01)

Or try PaperBLAST, fast.genomics, the ENIGMA genome browser, or the comparative fitness browser

Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas syringae pv. syringae B728a Psyr_3437 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG strong 100 100
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3437 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG cofit 100 100
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3626 RNA polymerase sigma factor for flagellar operon insig. 95 100
o Pseudomonas fluorescens FW300-N2E3 AO353_18785 flagellar biosynthesis sigma factor strong 95 100
o Pseudomonas fluorescens GW456-L13 PfGW456L13_4331 RNA polymerase sigma factor for flagellar operon insig. 94 100
o Pseudomonas fluorescens SBW25 PFLU_RS21660 RNA polymerase sigma factor FliA cofit 94 100
o Pseudomonas fluorescens SBW25-INTG PFLU_RS21660 RNA polymerase sigma factor FliA strong 94 100
o Pseudomonas simiae WCS417 PS417_19695 flagellar biosynthesis sigma factor strong 94 100
o Pseudomonas fluorescens FW300-N2C3 AO356_03730 flagellar biosynthesis sigma factor strong 93 100
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2573 RNA polymerase sigma factor for flagellar operon strong 93 100
o Pseudomonas sp. RS175 PFR28_00852 RNA polymerase sigma factor FliA strong 93 100
o Pseudomonas putida KT2440 PP_4341 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons strong 89 100
o Pseudomonas sp. S08-1 OH686_02730 RNA polymerase sigma factor for flagellar operon cofit 87 97
o Pseudomonas stutzeri RCH2 Psest_1740 RNA polymerase sigma factor, FliA/WhiG family strong 84 96
o Marinobacter adhaerens HP15 HP15_2302 flagellar biosynthesis sigma factor FliA strong 60 98
o Alteromonas macleodii MIT1002 MIT1002_01103 Sigma-F factor sig. 57 99
o Shewanella amazonensis SB2B Sama_2280 fliA flagellar biosynthesis sigma factor (RefSeq) strong 59 94
o Rhodanobacter denitrificans MT42 LRK55_RS13320 RNA polymerase sigma factor FliA insig. 59 96
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS13580 RNA polymerase sigma factor FliA strong 59 96
o Shewanella oneidensis MR-1 SO3210 fliA RNA polymerase sigma-27 factor (NCBI ptt file) strong 56 94
o Shewanella sp. ANA-3 Shewana3_1359 fliA flagellar biosynthesis sigma factor (RefSeq) strong 56 94
o Shewanella loihica PV-4 Shew_1383 fliA flagellar biosynthesis sigma factor (RefSeq) strong 56 94
o Vibrio cholerae E7946 ATCC 55056 CSW01_10335 RNA polymerase sigma factor FliA cofit 57 93
o Rhodanobacter sp. FW510-T8 OKGIIK_02830 fliA RNA polymerase sigma factor FliA insig. 56 96
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS20265 RNA polymerase sigma factor FliA insig. 55 96
o Lysobacter sp. OAE881 ABIE51_RS16865 RNA polymerase sigma factor FliA strong 52 97
o Dechlorosoma suillum PS Dsui_1726 RNA polymerase sigma factor, FliA/WhiG family cofit 49 96
o Herbaspirillum seropedicae SmR1 HSERO_RS10160 flagellar biosynthesis sigma factor strong 49 96
o Paraburkholderia graminis OAS925 ABIE53_000108 RNA polymerase sigma factor for flagellar operon FliA strong 49 96
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.2832.1 RNA polymerase sigma factor for flagellar operon cofit 54 94
o Paraburkholderia sabiae LMG 24235 QEN71_RS28940 RNA polymerase sigma factor FliA strong 49 96
o Burkholderia phytofirmans PsJN BPHYT_RS18925 RNA polymerase sigma70 strong 48 96
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05756 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG strong 48 96
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS17485 RNA polymerase sigma factor FliA insig. 44 98
o Ralstonia solanacearum UW163 UW163_RS21665 RNA polymerase sigma factor FliA insig. 44 98
o Dickeya dianthicola 67-19 HGI48_RS13350 RNA polymerase sigma factor FliA cofit 50 95
o Dickeya dianthicola ME23 DZA65_RS13835 RNA polymerase sigma factor FliA strong 50 95
o Ralstonia solanacearum GMI1000 RS_RS23830 RNA polymerase sigma factor FliA insig. 44 97
o Ralstonia solanacearum PSI07 RPSI07_RS06165 RNA polymerase sigma factor FliA insig. 45 97
o Dickeya dadantii 3937 DDA3937_RS13300 RNA polymerase sigma factor FliA strong 50 95
o Erwinia tracheiphila SCR3 LU632_RS13785 RNA polymerase sigma factor FliA insig. 53 90
o Ralstonia sp. UNC404CL21Col ABZR87_RS18040 RNA polymerase sigma factor FliA strong 44 97
o Escherichia coli ECOR27 NOLOHH_16400 fliA RNA polymerase sigma factor FliA cofit 50 96
o Escherichia coli ECOR38 HEPCGN_04135 fliA RNA polymerase sigma factor FliA cofit 50 96
o Escherichia coli ECRC101 OKFHMN_25780 fliA RNA polymerase sigma factor FliA insig. 50 96
o Escherichia coli ECRC101 MCAODC_19610 fliA RNA polymerase sigma factor FliA insig. 50 96
o Escherichia coli ECRC102 NIAGMN_02270 fliA RNA polymerase sigma factor FliA no data 50 96
o Escherichia coli ECRC62 BNILDI_15190 fliA RNA polymerase sigma factor FliA insig. 50 96
o Escherichia coli ECRC98 JDDGAC_00370 fliA RNA polymerase sigma factor FliA no data 50 96
o Escherichia coli ECRC99 KEDOAH_02310 fliA RNA polymerase sigma factor FliA no data 50 96
o Escherichia coli Nissle 1917 ECOLIN_RS10975 RNA polymerase sigma factor FliA insig. 50 96
o Escherichia coli BW25113 b1922 fliA flagellar biosynthesis; alternative sigma factor 28; regulation of flagellar operons (VIMSS) sig. 50 96
o Cupriavidus basilensis FW507-4G11 RR42_RS35750 DNA-directed RNA polymerase sigma-70 factor insig. 48 95
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_01807 RNA polymerase sigma factor FliA insig. 50 96
o Pantoea sp. MT58 IAI47_08160 RNA polymerase sigma factor FliA cofit 49 95
o Escherichia fergusonii Becca EFB2_02023 RNA polymerase sigma factor FliA insig. 50 96
o Serratia liquefaciens MT49 IAI46_15785 RNA polymerase sigma factor FliA insig. 52 89
o Acidovorax sp. GW101-3H11 Ac3H11_1381 RNA polymerase sigma factor for flagellar operon sig. 43 95
o Enterobacter asburiae PDN3 EX28DRAFT_0625 RNA polymerase sigma factor, FliA/WhiG family cofit 49 96
o Enterobacter sp. TBS_079 MPMX20_02847 RNA polymerase sigma factor FliA strong 49 96
o Pectobacterium carotovorum WPP14 HER17_RS08355 RNA polymerase sigma factor FliA cofit 50 95
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF1690 RNA polymerase sigma factor for flagellar operon strong 49 96
o Rahnella sp. WP5 EX31_RS09450 RNA polymerase sigma factor FliA cofit 48 95
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF1428 RNA polymerase sigma factor for flagellar operon insig. 43 95
o Variovorax sp. SCN45 GFF5774 RNA polymerase sigma factor for flagellar operon insig. 43 95
o Castellaniella sp019104865 MT123 ABCV34_RS05605 RNA polymerase sigma factor FliA strong 45 92
o Desulfovibrio vulgaris Miyazaki F DvMF_2011 RNA polymerase, sigma 28 subunit, FliA/WhiG (RefSeq) strong 42 95
o Desulfovibrio vulgaris Hildenborough JW710 DVU3229 fliA RNA polymerase sigma factor for flagellar operon FliA (TIGR) strong 39 89
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4065 RNA polymerase sigma factor for flagellar operon insig. 36 87
  Pseudomonas stutzeri RCH2 Psest_4160 RNA polymerase sigma factor, FliA/WhiG family insig. 40 87
  Erwinia tracheiphila SCR3 LU632_RS20475 FliA/WhiG family RNA polymerase sigma factor no data 38 88
o Sphingomonas koreensis DSMZ 15582 Ga0059261_2081 RNA polymerase sigma factor, FliA/WhiG family cofit 35 89
  Escherichia coli Nissle 1917 ECOLIN_RS10960 sigma-70 family RNA polymerase sigma factor no data 65 24
  Sphingomonas koreensis DSMZ 15582 Ga0059261_1726 RNA polymerase sigma factor, sigma-70 family insig. 29 89
  Variovorax sp. SCN45 GFF6984 RNA polymerase sigma factor for flagellar operon insig. 26 81
  Mycobacterium tuberculosis H37Rv Rv3286c Alternative RNA polymerase sigma factor SigF insig. 27 90
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS15895 RNA polymerase sigma factor RpoD/SigA no data 28 78
  Phocaeicola dorei CL03T12C01 ABI39_RS13985 RNA polymerase sigma factor RpoD/SigA no data 28 78
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS17770 RNA polymerase sigma factor RpoD/SigA no data 28 78
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS04285 RNA polymerase sigma factor RpoD no data 28 78
  Bacteroides ovatus ATCC 8483 BACOVA_00615 Sigma-70 region 2 no data 28 78
  Bacteroides stercoris CC31F HMPREF1181_RS10780 RNA polymerase sigma factor RpoD/SigA no data 28 78
  Bacteroides thetaiotaomicron VPI-5482 BT1311 RNA polymerase sigma factor rpoD (Sigma-A) (NCBI ptt file) no data 28 78
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS16420 RNA polymerase sigma factor RpoD/SigA no data 28 78
  Synechococcus elongatus PCC 7942 Synpcc7942_1746 rpoD2 group2 RNA polymerase sigma factor SigB strong 31 78
  Rhodanobacter denitrificans MT42 LRK55_RS07055 RNA polymerase sigma factor RpoD no data 26 91
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS07325 RNA polymerase sigma factor RpoD no data 26 91
  Rhodanobacter sp. FW510-T8 OKGIIK_13865 rpoD RNA polymerase sigma factor RpoD no data 26 91
  Rhizobium sp. OAE497 ABIE40_RS18645 RNA polymerase factor sigma-32 insig. 28 82
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_04885 RNA polymerase subunit sigma no data 27 78
  Sinorhizobium meliloti 1021 SMc03873 RNA polymerase factor sigma-32 insig. 30 79
  Dechlorosoma suillum PS Dsui_1971 RNA polymerase sigma factor RpoS cofit 28 90
  Synechococcus elongatus PCC 7942 Synpcc7942_1849 sigC RNA polymerase sigma factor SigC strong 29 78
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.4729.1 RNA polymerase sigma factor RpoD no data 24 91
  Enterobacter asburiae PDN3 EX28DRAFT_3102 RNA polymerase, sigma 70 subunit, RpoD no data 26 91
  Klebsiella michiganensis M5al BWI76_RS24555 RNA polymerase sigma factor RpoD no data 26 91
  Lysobacter sp. OAE881 ABIE51_RS02310 RNA polymerase sigma factor RpoD no data 24 91
  Synechococcus elongatus PCC 7942 Synpcc7942_1557 rpoD6 principal RNA polymerase sigma factor SigA strong 31 78
  Escherichia coli BL21 ECD_02937 RNA polymerase, sigma 70 (sigma D) factor no data 26 91
  Escherichia fergusonii Becca EFB2_00744 RNA polymerase sigma factor RpoD no data 26 91