Homologs of PP_4532 from Pseudomonas putida KT2440

ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis
SEED: ATP-dependent RNA helicase SrmB

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas putida KT2440 PP_4532 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis strong 100 100
o Pseudomonas sp. BP01 JOY50_RS01230 DEAD/DEAH box helicase insig. 98 100
o Pseudomonas sp. SVBP6 COO64_RS21930 DEAD/DEAH box helicase insig. 87 100
o Pseudomonas sp. DMC3 GFF2355 ATP-dependent RNA helicase RhlE no data 79 100
o Pseudomonas fluorescens GW456-L13 PfGW456L13_4451 ATP-dependent RNA helicase SrmB strong 79 100
o Pseudomonas syringae pv. syringae B728a Psyr_3791 Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal sig. 78 100
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3791 Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal insig. 78 100
o Pseudomonas fluorescens FW300-N2C3 AO356_04210 RNA helicase no data 78 100
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2675 ATP-dependent RNA helicase SrmB insig. 78 100
o Pseudomonas fluorescens FW300-N2E3 AO353_18305 RNA helicase sig. 77 100
o Pseudomonas sp. RS175 PFR28_00756 ATP-dependent RNA helicase RhlE insig. 78 100
o Pseudomonas simiae WCS417 PS417_20275 RNA helicase no data 77 100
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_543 ATP-dependent RNA helicase SrmB no data 76 100
o Pseudomonas orientalis W4I3 QF045_RS22365 DEAD/DEAH box helicase insig. 77 100
o Pseudomonas lactucae CFBP13502 GEMAOFIL_04249 ATP-dependent RNA helicase RhlE insig. 77 100
o Pseudomonas fluorescens SBW25 PFLU_RS22195 DEAD/DEAH box helicase strong 77 100
o Pseudomonas fluorescens SBW25-INTG PFLU_RS22195 DEAD/DEAH box helicase strong 77 100
o Pseudomonas segetis P6 ACVTMO_RS16090 DEAD/DEAH box helicase no data 75 100
o Pseudomonas stutzeri RCH2 Psest_1627 Superfamily II DNA and RNA helicases strong 74 100
o Pseudomonas sp. S08-1 OH686_05415 ATP-dependent RNA helicase SrmB cofit 74 100
o Pseudomonas aeruginosa PA14 IKLFDK_17790 RNA helicase insig. 71 100
o Pseudomonas aeruginosa PUPa3 DQ20_RS41480 DEAD/DEAH box helicase no data 71 100
o Pseudomonas aeruginosa MRSN321 DY961_RS15590 DEAD/DEAH box helicase strong 71 100
o Kangiella aquimarina DSM 16071 B158DRAFT_1312 Superfamily II DNA and RNA helicases insig. 44 98
o Shewanella oneidensis MR-1 SO2838 ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) insig. 41 93
  Herbaspirillum seropedicae SmR1 HSERO_RS17855 DEAD/DEAH box helicase sig. 41 96
o Shewanella sp. ANA-3 Shewana3_2606 DEAD/DEAH box helicase domain-containing protein (RefSeq) no data 42 87
o Pantoea sp. MT58 IAI47_04835 ATP-dependent RNA helicase SrmB strong 41 94
o Shewanella amazonensis SB2B Sama_1273 DEAD/DEAH box helicase-like protein (RefSeq) no data 39 99
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS14725 ATP-dependent RNA helicase SrmB strong 40 95
  Pseudomonas segetis P6 ACVTMO_RS05445 DEAD/DEAH box helicase sig. 45 83
o Erwinia amylovora T8 OLJFJH_10200 ATP-dependent RNA helicase SrmB strong 40 94
  Ralstonia solanacearum PSI07 RPSI07_RS21325 RNA helicase sig. 39 95
o Serratia liquefaciens MT49 IAI46_19600 ATP-dependent RNA helicase SrmB strong 42 95
  Ralstonia solanacearum GMI1000 RS_RS02695 RNA helicase sig. 42 84
  Vibrio cholerae E7946 ATCC 55056 CSW01_18020 DEAD/DEAH box helicase cofit 41 91
  Ralstonia sp. UNC404CL21Col ABZR87_RS07850 DEAD/DEAH box helicase sig. 42 84
o Shewanella loihica PV-4 Shew_2452 DEAD/DEAH box helicase domain-containing protein (RefSeq) no data 40 100
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS11875 RNA helicase strong 42 84
  Ralstonia solanacearum UW163 UW163_RS01715 RNA helicase insig. 42 84
  Vibrio cholerae E7946 ATCC 55056 CSW01_03475 ATP-dependent RNA helicase SrmB cofit 43 84
  Cupriavidus basilensis FW507-4G11 RR42_RS02870 RNA helicase sig. 38 97
  Pseudomonas sp. RS175 PFR28_03825 ATP-dependent RNA helicase RhlE insig. 39 99
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_5046 ATP-dependent RNA helicase PA3950 strong 39 99
  Pseudomonas fluorescens FW300-N2C3 AO356_15530 DEAD/DEAH box helicase sig. 39 99
  Ralstonia sp. UNC404CL21Col ABZR87_RS15540 DEAD/DEAH box helicase sig. 41 85
  Ralstonia solanacearum PSI07 RPSI07_RS13580 ATP-dependent helicase sig. 41 85
  Pseudomonas fluorescens FW300-N2E3 AO353_06265 DEAD/DEAH box helicase strong 39 99
  Pseudomonas aeruginosa PA14 IKLFDK_20375 DEAD/DEAH box helicase sig. 43 84
  Pseudomonas aeruginosa PUPa3 DQ20_RS48430 DEAD/DEAH box helicase sig. 43 84
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF222 ATP-dependent RNA helicase Bcep18194_A5658 insig. 42 83
  Paraburkholderia sabiae LMG 24235 QEN71_RS24485 DEAD/DEAH box helicase insig. 43 83
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_01260 srmB ATP-dependent RNA helicase SrmB strong 42 93
o Erwinia tracheiphila SCR3 LU632_RS15440 srmB ATP-dependent RNA helicase SrmB cofit 42 93
  Vibrio cholerae E7946 ATCC 55056 CSW01_14335 ATP-dependent helicase insig. 40 90
  Pseudomonas aeruginosa MRSN321 DY961_RS13105 DEAD/DEAH box helicase insig. 43 84
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS03650 ATP-dependent helicase insig. 41 85
  Ralstonia solanacearum UW163 UW163_RS10020 ATP-dependent helicase insig. 41 85
  Azospirillum sp. SherDot2 MPMX19_02011 RNA helicase CrhR strong 41 94
  Paraburkholderia graminis OAS925 ABIE53_001438 ATP-dependent RNA helicase RhlE strong 42 83
  Ralstonia solanacearum GMI1000 RS_RS11095 ATP-dependent helicase sig. 41 85
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04222 ATP-dependent RNA helicase RhlE sig. 41 84
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2736 ATP-dependent RNA helicase PA3950 sig. 39 99
  Acidovorax sp. GW101-3H11 Ac3H11_1125 ATP-dependent RNA helicase Bcep18194_A5658 no data 42 83
  Paraburkholderia graminis OAS925 ABIE53_003462 ATP-dependent RNA helicase RhlE sig. 41 84
o Pectobacterium carotovorum WPP14 HER17_RS05765 ATP-dependent RNA helicase SrmB cofit 40 90
  Pseudomonas orientalis W4I3 QF045_RS26765 DEAD/DEAH box helicase insig. 39 96
o Dickeya dadantii 3937 DDA3937_RS15780 ATP-dependent RNA helicase SrmB strong 42 90
  Burkholderia phytofirmans PsJN BPHYT_RS16445 RNA helicase strong 41 84
  Marinobacter adhaerens HP15 HP15_3607 DEAD/DEAH box helicase domain protein insig. 41 88
  Pseudomonas lactucae CFBP13502 GEMAOFIL_05046 ATP-dependent RNA helicase RhlE cofit 39 96
  Dechlorosoma suillum PS Dsui_3406 DNA/RNA helicase, superfamily II insig. 38 94
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2382 ATP-dependent RNA helicase RhlE sig. 42 83
  Pantoea sp. MT58 IAI47_13435 ATP-dependent RNA helicase RhlE insig. 42 84
  Shewanella amazonensis SB2B Sama_2742 ATP-dependent RNA helicase SrmB (RefSeq) cofit 42 85
  Cupriavidus basilensis FW507-4G11 RR42_RS14810 DEAD/DEAH box helicase insig. 41 83
  Methylophilus sp. DMC18 GFF1281 ATP-dependent RNA helicase RhlE cofit 38 93
  Pseudomonas sp. DMC3 GFF174 ATP-dependent RNA helicase RhlE cofit 42 83
o Alteromonas macleodii MIT1002 MIT1002_00941 ATP-dependent RNA helicase SrmB no data 42 85
  Pseudomonas fluorescens GW456-L13 PfGW456L13_1048 ATP-dependent RNA helicase RhlE sig. 42 83
  Paraburkholderia sabiae LMG 24235 QEN71_RS02265 DEAD/DEAH box helicase strong 41 84
  Pseudomonas fluorescens GW456-L13 PfGW456L13_1409 ATP-dependent RNA helicase PA3950 insig. 38 99
  Pseudomonas lactucae CFBP13502 GEMAOFIL_05436 ATP-dependent RNA helicase RhlE cofit 42 83
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS03875 ATP-dependent RNA helicase RhlE cofit 41 84
o Rahnella sp. WP5 EX31_RS21785 ATP-dependent RNA helicase SrmB cofit 40 95
  Acidovorax sp. GW101-3H11 Ac3H11_386 ATP-dependent RNA helicase RhlE insig. 41 84
  Pseudomonas orientalis W4I3 QF045_RS00920 DEAD/DEAH box helicase cofit 42 83
  Pseudomonas sp. DMC3 GFF3924 ATP-dependent RNA helicase RhlE cofit 42 84
  Castellaniella sp019104865 MT123 ABCV34_RS07925 DEAD/DEAH box helicase cofit 42 83
  Pseudomonas fluorescens SBW25 PFLU_RS26425 DEAD/DEAH box helicase insig. 39 96
  Pseudomonas fluorescens SBW25-INTG PFLU_RS26425 DEAD/DEAH box helicase sig. 39 96
  Pseudomonas sp. BP01 JOY50_RS21825 DEAD/DEAH box helicase insig. 43 83
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00308 Superfamily II DNA and RNA helicase strong 42 83
  Shewanella sp. ANA-3 Shewana3_3336 ATP-dependent RNA helicase SrmB (RefSeq) strong 41 85
  Bosea sp. OAE506 ABIE41_RS22380 DEAD/DEAH box helicase insig. 42 82
o Dickeya dianthicola ME23 DZA65_RS16945 ATP-dependent RNA helicase SrmB cofit 41 90
  Azospirillum sp. SherDot2 MPMX19_06125 RNA helicase CrhR insig. 43 82
  Pseudomonas sp. RS175 PFR28_04204 ATP-dependent RNA helicase RhlE sig. 43 83
  Pseudomonas fluorescens SBW25 PFLU_RS28180 DEAD/DEAH box helicase cofit 42 83
  Pseudomonas fluorescens SBW25-INTG PFLU_RS28180 DEAD/DEAH box helicase sig. 42 83