Homologs of LRK54_RS06920 from Rhodanobacter denitrificans FW104-10B01

class I SAM-dependent rRNA methyltransferase
SEED: LSU m5C1962 methyltransferase RlmI
KEGG: ribosomal RNA large subunit methyltransferase I

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS06920 class I SAM-dependent rRNA methyltransferase insig. 100 100
o Rhodanobacter denitrificans MT42 LRK55_RS06665 class I SAM-dependent rRNA methyltransferase insig. 100 100
o Rhodanobacter sp. FW510-T8 OKGIIK_16710 rlmK RlmI/RlmK family 23S rRNA methyltransferase insig. 94 100
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS16890 class I SAM-dependent rRNA methyltransferase sig. 84 100
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.5393.1 LSU m5C1962 methyltransferase RlmI insig. 57 100
o Lysobacter sp. OAE881 ABIE51_RS00980 class I SAM-dependent rRNA methyltransferase insig. 57 100
o Pantoea sp. MT58 IAI47_12595 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI insig. 36 95
o Enterobacter asburiae PDN3 EX28DRAFT_1976 Predicted SAM-dependent methyltransferases insig. 34 95
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF3258 LSU m5C1962 methyltransferase RlmI insig. 35 95
o Klebsiella michiganensis M5al BWI76_RS10045 23S rRNA (cytosine(1962)-C(5))-methyltransferase sig. 34 95
o Escherichia coli BL21 ECD_00971 23S rRNA m(5)C1962 methyltransferase, SAM-dependent insig. 34 95
o Escherichia coli BW25113 b0967 yccW predicted methyltransferase (RefSeq) sig. 34 95
o Enterobacter sp. TBS_079 MPMX20_01617 Ribosomal RNA large subunit methyltransferase I insig. 34 95
o Escherichia coli ECOR27 NOLOHH_21740 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI insig. 34 95
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_02699 Ribosomal RNA large subunit methyltransferase I insig. 34 95
o Escherichia coli ECOR38 HEPCGN_23335 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI cofit 33 95
o Escherichia coli ECRC100 OKFHMN_05185 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI insig. 34 95
o Escherichia coli ECRC101 MCAODC_24575 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI insig. 34 95
o Escherichia coli ECRC102 NIAGMN_02905 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI insig. 34 95
o Escherichia coli ECRC62 BNILDI_19905 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI cofit 34 95
o Escherichia coli ECRC98 JDDGAC_08795 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI cofit 34 95
o Escherichia coli ECRC99 KEDOAH_22550 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI no data 34 95
o Magnetospirillum magneticum AMB-1 AMB_RS22065 class I SAM-dependent rRNA methyltransferase cofit 40 98
o Escherichia coli Nissle 1917 ECOLIN_RS05085 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI no data 33 95
o Escherichia fergusonii Becca EFB2_03104 Ribosomal RNA large subunit methyltransferase I insig. 33 95
o Shewanella amazonensis SB2B Sama_2965 putative SAM-dependent methyltransferase (RefSeq) insig. 35 97
o Serratia liquefaciens MT49 IAI46_08925 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI insig. 33 95
o Erwinia tracheiphila SCR3 LU632_RS10090 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI insig. 34 95
o Vibrio cholerae E7946 ATCC 55056 CSW01_06820 ribosomal RNA large subunit methyltransferase I insig. 33 95
o Shewanella oneidensis MR-1 SO1149 hypothetical SAM-dependent methyltransferase (NCBI ptt file) strong 34 97
o Shewanella sp. ANA-3 Shewana3_0977 SAM-dependent methyltransferase (RefSeq) insig. 34 97
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS22040 class I SAM-dependent rRNA methyltransferase insig. 33 95
o Rahnella sp. WP5 EX31_RS17990 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI insig. 33 95
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS19815 RlmI/RlmK family 23S rRNA methyltransferase insig. 32 95
o Azospirillum brasilense Sp245 AZOBR_RS01190 SAM-dependent methyltransferase insig. 36 100
o Ralstonia solanacearum GMI1000 RS_RS00255 class I SAM-dependent rRNA methyltransferase insig. 34 95
o Ralstonia solanacearum PSI07 RPSI07_RS23695 class I SAM-dependent rRNA methyltransferase insig. 35 95
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS09670 class I SAM-dependent rRNA methyltransferase strong 35 95
o Ralstonia solanacearum UW163 UW163_RS03910 class I SAM-dependent rRNA methyltransferase insig. 35 95
o Dechlorosoma suillum PS Dsui_0653 putative SAM-dependent methyltransferase cofit 33 95
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_02203 SAM-dependent methyltransferase /23S rRNA m(5)C-1962 methyltransferase insig. 34 98
o Paraburkholderia graminis OAS925 ABIE53_000425 23S rRNA (cytosine1962-C5)-methyltransferase insig. 34 98
o Ralstonia sp. UNC404CL21Col ABZR87_RS05070 class I SAM-dependent rRNA methyltransferase insig. 33 95
o Azospirillum sp. SherDot2 MPMX19_00203 Ribosomal RNA large subunit methyltransferase I insig. 36 98
o Burkholderia phytofirmans PsJN BPHYT_RS01650 23S rRNA methyltransferase insig. 34 95
o Variovorax sp. SCN45 GFF4489 23S rRNA (cytosine(1962)-C(5))-methyltransferase (EC 2.1.1.191) insig. 35 94
o Cupriavidus basilensis FW507-4G11 RR42_RS01670 23S rRNA methyltransferase insig. 32 94
o Paraburkholderia sabiae LMG 24235 QEN71_RS00350 class I SAM-dependent rRNA methyltransferase insig. 32 95
o Alteromonas macleodii MIT1002 MIT1002_01688 Ribosomal RNA large subunit methyltransferase I insig. 31 100
o Variovorax sp. OAS795 ABID97_RS06155 class I SAM-dependent methyltransferase insig. 35 94
o Acidovorax sp. GW101-3H11 Ac3H11_2000 LSU m5C1962 methyltransferase RlmI insig. 34 94
o Parabacteroides merdae CL09T00C40 HMPREF1078_RS13685 class I SAM-dependent rRNA methyltransferase cofit 33 95
o Pseudomonas stutzeri RCH2 Psest_0236 Predicted SAM-dependent methyltransferases insig. 32 98
o Phocaeicola dorei CL03T12C01 ABI39_RS18215 class I SAM-dependent rRNA methyltransferase insig. 31 95
o Bacteroides ovatus ATCC 8483 BACOVA_05134 hypothetical protein insig. 31 95
o Pontibacter actiniarum KMM 6156, DSM 19842 CA264_05605 RlmI/RlmK family 23S rRNA methyltransferase insig. 31 95
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3350 Predicted SAM-dependent methyltransferases insig. 29 99
o Rhodospirillum rubrum S1H Rru_A3333 hypothetical protein (NCBI) insig. 34 98
o Pseudomonas fluorescens SBW25 PFLU_RS28525 class I SAM-dependent rRNA methyltransferase insig. 31 98
o Pseudomonas fluorescens SBW25-INTG PFLU_RS28525 class I SAM-dependent rRNA methyltransferase insig. 31 98
o Pseudomonas fluorescens GW456-L13 PfGW456L13_977 LSU m5C1962 methyltransferase RlmI insig. 31 98
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2307 LSU m5C1962 methyltransferase RlmI insig. 31 98
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS05890 class I SAM-dependent rRNA methyltransferase sig. 31 95
o Pseudomonas putida KT2440 PP_5127 ribosomal RNA large subunit methyltransferase I insig. 30 98
o Pseudomonas simiae WCS417 PS417_26880 SAM-dependent methyltransferase insig. 31 98
o Pseudomonas fluorescens FW300-N2E3 AO353_08330 SAM-dependent methyltransferase insig. 31 98
o Bacteroides stercoris CC31F HMPREF1181_RS05925 class I SAM-dependent rRNA methyltransferase insig. 32 95
o Pseudomonas fluorescens FW300-N2C3 AO356_13260 SAM-dependent methyltransferase insig. 30 98
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4566 LSU m5C1962 methyltransferase RlmI insig. 30 98
o Pseudomonas sp. RS175 PFR28_04274 Ribosomal RNA large subunit methyltransferase I insig. 30 98
o Pseudomonas syringae pv. syringae B728a Psyr_4764 SAM-dependent methyltransferase insig. 30 98
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4764 SAM-dependent methyltransferase insig. 30 98
o Bacteroides thetaiotaomicron VPI-5482 BT4331 conserved hypothetical protein (NCBI ptt file) strong 30 95
o Desulfovibrio vulgaris Hildenborough JW710 DVU0495 conserved hypothetical protein (TIGR) sig. 33 95
o Marinobacter adhaerens HP15 HP15_460 SAM-dependent methyltransferase insig. 29 95
o Desulfovibrio vulgaris Miyazaki F DvMF_1714 protein of unknown function Met10 (RefSeq) insig. 32 95
o Phaeobacter inhibens DSM 17395 PGA1_c19990 ribosomal RNA large subunit methyltransferase I sig. 33 95
o Pseudomonas sp. S08-1 OH686_14110 23S rRNA (cytosine(1962)-C(5))-methyltransferase insig. 29 98
o Dinoroseobacter shibae DFL-12 Dshi_1771 hypothetical protein (RefSeq) sig. 35 100
o Fusobacterium nucleatum SB010 HUW76_04950 class I SAM-dependent rRNA methyltransferase cofit 24 95
o Methanococcus maripaludis JJ MMJJ_RS07620 class I SAM-dependent rRNA methyltransferase insig. 29 88
o Methanococcus maripaludis S2 MMP_RS06735 class I SAM-dependent rRNA methyltransferase sig. 29 88
  Dechlorosoma suillum PS Dsui_2758 putative SAM-dependent methyltransferase sig. 31 80
  Variovorax sp. SCN45 GFF7188 Uncharacterized methyltransferase PA1407 insig. 28 75
  Pseudomonas fluorescens GW456-L13 PfGW456L13_1514 Methyltransferase (EC 2.1.1.-) insig. 26 72
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF3418 Methyltransferase (EC 2.1.1.-) insig. 29 61
  Pseudomonas simiae WCS417 PS417_23935 SAM-dependent methyltransferase insig. 26 72
  Pseudomonas syringae pv. syringae B728a Psyr_4172 conserved hypothetical protein insig. 26 72
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4172 conserved hypothetical protein insig. 26 72
  Pseudomonas fluorescens SBW25 PFLU_RS25775 class I SAM-dependent rRNA methyltransferase insig. 25 72
  Pseudomonas fluorescens SBW25-INTG PFLU_RS25775 class I SAM-dependent rRNA methyltransferase insig. 25 72
  Shewanella amazonensis SB2B Sama_1491 hypothetical protein (RefSeq) insig. 30 59
  Pseudomonas sp. RS175 PFR28_03726 Ribosomal RNA large subunit methyltransferase I insig. 26 73
  Pseudomonas fluorescens FW300-N2C3 AO356_16040 SAM-dependent methyltransferase insig. 25 73
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_5148 Methyltransferase (EC 2.1.1.-) insig. 25 72
  Shewanella loihica PV-4 Shew_3324 hypothetical protein (RefSeq) insig. 25 68
  Shewanella oneidensis MR-1 SO1851 conserved hypothetical protein (NCBI ptt file) strong 25 64
  Pseudomonas fluorescens SBW25 PFLU_RS13570 methyltransferase insig. 34 44
  Pseudomonas fluorescens SBW25-INTG PFLU_RS13570 methyltransferase sig. 34 44
  Alteromonas macleodii MIT1002 MIT1002_02036 Ribosomal RNA large subunit methyltransferase K/L cofit 24 63