Homologs of HMPREF1078_RS01980 from Parabacteroides merdae CL09T00C40

3'-5' exonuclease
SEED: DNA Pol III Epsilon Chain
KEGG: DNA polymerase III subunit epsilon

155 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS01980 3'-5' exonuclease strong 100 100
o Bacteroides thetaiotaomicron VPI-5482 BT1363 DNA Pol III Epsilon Chain (NCBI ptt file) strong 78 98
o Bacteroides ovatus ATCC 8483 BACOVA_00202 exonuclease sig. 78 98
o Bacteroides stercoris CC31F HMPREF1181_RS10910 3'-5' exonuclease no data 75 100
o Phocaeicola dorei CL03T12C01 ABI39_RS14510 3'-5' exonuclease strong 76 98
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS18235 3'-5' exonuclease strong 76 98
o Cellulophaga baltica 18 M666_RS09395 3'-5' exonuclease no data 61 100
o Pontibacter actiniarum KMM 6156, DSM 19842 CA264_11920 DNA polymerase III subunit epsilon insig. 61 98
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3818 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases strong 58 100
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS07970 3'-5' exonuclease strong 57 100
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS07680 DNA polymerase III subunit epsilon strong 55 100
  Methylophilus sp. DMC18 GFF1760 3'-5' exonuclease DinG insig. 43 41
  Cupriavidus basilensis FW507-4G11 RR42_RS36200 ethanolamine utilization protein insig. 43 42
  Dechlorosoma suillum PS Dsui_0101 exonuclease, DNA polymerase III, epsilon subunit family cofit 41 42
  Paraburkholderia sabiae LMG 24235 QEN71_RS03705 exonuclease domain-containing protein insig. 43 42
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_03997 DNA polymerase-3 subunit epsilon insig. 39 43
  Burkholderia phytofirmans PsJN BPHYT_RS15265 DNA polymerase III subunit epsilon insig. 36 43
  Alteromonas macleodii MIT1002 MIT1002_03947 DNA polymerase III PolC-type insig. 32 64
  Sinorhizobium meliloti 1021 SMc02789 DNA polymerase III subunit epsilon no data 31 61
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS13650 DNA polymerase III subunit epsilon no data 31 61
  Marinobacter adhaerens HP15 HP15_3043 DNA polymerase III, epsilon subunit cofit 38 40
  Shewanella oneidensis MR-1 SO2559 dnaQ-2 DNA polymerase III, epsilon subunit (NCBI ptt file) no data 38 38
  Shewanella sp. ANA-3 Shewana3_2365 DNA polymerase III, epsilon subunit (RefSeq) no data 38 38
  Magnetospirillum magneticum AMB-1 AMB_RS07795 DNA polymerase III subunit epsilon insig. 30 63
  Agrobacterium fabrum C58 Atu0005 DNA polymerase III, epsilon chain no data 29 61
  Dinoroseobacter shibae DFL-12 Dshi_3559 DNA polymerase III, epsilon subunit (RefSeq) cofit 32 65
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS02300 DNA polymerase III subunit epsilon no data 36 40
  Ralstonia solanacearum UW163 UW163_RS11425 DNA polymerase III subunit epsilon no data 36 40
  Klebsiella pneumoniae MKP103 KDGMDA_25335 exodeoxyribonuclease X insig. 25 95
  Klebsiella pneumoniae MRSN742743 GJGHJB_01814 exoX exodeoxyribonuclease X insig. 25 95
  Acinetobacter radioresistens SK82 MPMX26_02275 Ribonuclease H cofit 38 43
  Azospirillum sp. SherDot2 MPMX19_01859 3'-5' exonuclease DinG insig. 35 41
  Bosea sp. OAE506 ABIE41_RS04640 DNA polymerase III subunit epsilon insig. 36 40
  Shewanella loihica PV-4 Shew_2111 DNA polymerase III, epsilon subunit (RefSeq) no data 37 38
  Ralstonia sp. UNC404CL21Col ABZR87_RS14230 DNA polymerase III subunit epsilon no data 36 40
  Marinobacter adhaerens HP15 HP15_3950 exonuclease, RNase T and DNA polymerase III insig. 29 63
  Rahnella sp. WP5 EX31_RS21175 DNA polymerase III subunit epsilon no data 34 41
  Azospirillum brasilense Sp245 AZOBR_RS14205 exonuclease strong 35 41
  Acinetobacter baumannii LAC-4 RR41_RS09305 DNA polymerase III subunit epsilon no data 35 43
  Erwinia amylovora T8 OLJFJH_18625 DNA polymerase III subunit epsilon no data 30 61
  Klebsiella michiganensis M5al BWI76_RS18070 DNA polymerase III subunit epsilon insig. 23 95
  Serratia liquefaciens MT49 IAI46_04150 DNA polymerase III subunit epsilon no data 35 40
  Sphingomonas koreensis DSMZ 15582 Ga0059261_2192 DNA polymerase III, epsilon subunit, Proteobacterial no data 29 61
  Ralstonia solanacearum PSI07 RPSI07_RS15070 DNA polymerase III subunit epsilon no data 36 39
  Shewanella amazonensis SB2B Sama_1880 DNA-directed DNA polymerase (RefSeq) no data 35 38
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_00010 3'-5' exonuclease no data 34 45
  Ralstonia solanacearum GMI1000 RS_RS09455 DNA polymerase III subunit epsilon no data 34 40
  Marinobacter adhaerens HP15 HP15_1802 DNA polymerase 3, epsilon subunit no data 36 39
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_15395 dnaQ DNA polymerase III subunit epsilon no data 34 41
  Erwinia tracheiphila SCR3 LU632_RS01095 dnaQ DNA polymerase III subunit epsilon no data 34 41
  Paraburkholderia graminis OAS925 ABIE53_003010 DNA polymerase-3 subunit epsilon no data 37 40
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13516_RS15635 dnaQ DNA polymerase III subunit epsilon no data 29 62
  Marinobacter adhaerens HP15 HP15_1993 exonuclease RNase T and DNA polymerase III insig. 27 67
  Rhizobium sp. OAE497 ABIE40_RS19260 DNA polymerase III subunit epsilon insig. 29 61
  Fusobacterium nucleatum SB010 HUW76_02840 PolC-type DNA polymerase III no data 28 65
  Rhodopseudomonas palustris CGA009 TX73_001565 DNA polymerase III subunit epsilon no data 33 39
  Shewanella sp. ANA-3 Shewana3_1577 exonuclease, RNase T and DNA polymerase III (RefSeq) sig. 27 64
  Erwinia amylovora T8 OLJFJH_12925 exodeoxyribonuclease X insig. 24 87
  Paraburkholderia sabiae LMG 24235 QEN71_RS04745 DNA polymerase III subunit epsilon no data 36 40
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS07560 DNA polymerase III subunit epsilon insig. 33 41
  Enterobacter sp. TBS_079 MPMX20_00900 DNA polymerase III subunit epsilon no data 32 41
  Sphingomonas koreensis DSMZ 15582 Ga0059261_2458 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases strong 38 27
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_07430 DNA repair nuclease with dnaQ and GIY-YIG domains (from data) strong 37 39
  Enterobacter asburiae PDN3 EX28DRAFT_2679 DNA polymerase III, epsilon subunit, Proteobacterial no data 32 41
  Burkholderia phytofirmans PsJN BPHYT_RS14225 DNA polymerase III subunit epsilon no data 37 40
  Alteromonas macleodii MIT1002 MIT1002_01691 DNA polymerase III subunit epsilon no data 34 38
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04396 DNA polymerase-3 subunit epsilon no data 37 40
  Methylophilus sp. DMC18 GFF1320 DNA polymerase III subunit epsilon no data 35 41
  Pantoea sp. MT58 IAI47_15325 DNA polymerase III subunit epsilon no data 33 39
  Vibrio cholerae E7946 ATCC 55056 CSW01_11380 DNA polymerase III subunit epsilon no data 32 40
  Azospirillum brasilense Sp245 AZOBR_RS01775 DNA polymerase III subunit epsilon sig. 29 61
  Escherichia fergusonii Becca EFB2_03828 DNA polymerase III subunit epsilon no data 33 38
  Shewanella loihica PV-4 Shew_1871 DNA polymerase III, epsilon subunit (RefSeq) no data 29 45
  Escherichia coli BL21 ECD_00208 DNA polymerase III epsilon subunit no data 33 38
  Rhodanobacter denitrificans MT42 LRK55_RS16505 DNA polymerase III subunit epsilon no data 34 40
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS16780 DNA polymerase III subunit epsilon no data 34 40
  Escherichia coli ECOR27 NOLOHH_02310 dnaQ DNA polymerase III subunit epsilon no data 33 38
  Escherichia coli ECOR38 HEPCGN_07905 dnaQ DNA polymerase III subunit epsilon no data 33 38
  Escherichia coli ECRC100 OKFHMN_09965 dnaQ DNA polymerase III subunit epsilon no data 33 38
  Escherichia coli ECRC101 MCAODC_00480 dnaQ DNA polymerase III subunit epsilon no data 33 38
  Escherichia coli ECRC102 NIAGMN_07815 dnaQ DNA polymerase III subunit epsilon no data 33 38
  Escherichia coli ECRC62 BNILDI_09360 dnaQ DNA polymerase III subunit epsilon no data 33 38
  Escherichia coli ECRC98 JDDGAC_13560 dnaQ DNA polymerase III subunit epsilon no data 33 38
  Escherichia coli ECRC99 KEDOAH_18190 dnaQ DNA polymerase III subunit epsilon no data 33 38
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_03446 DNA polymerase III subunit epsilon no data 33 38
  Escherichia coli Nissle 1917 ECOLIN_RS01175 DNA polymerase III subunit epsilon no data 33 38
  Escherichia coli BW25113 b0215 dnaQ DNA polymerase III subunit epsilon (NCBI) no data 33 38
  Klebsiella pneumoniae MKP103 KDGMDA_13705 DNA polymerase III subunit epsilon no data 31 38
  Klebsiella pneumoniae MRSN742743 GJGHJB_04049 dnaQ DNA polymerase III subunit epsilon no data 31 38
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS12090 DNA polymerase III subunit epsilon no data 34 40
  Rhodanobacter sp. FW510-T8 OKGIIK_07985 dnaQ DNA polymerase III subunit epsilon no data 34 40
  Cellulophaga baltica 18 M666_RS00695 exonuclease domain-containing protein insig. 29 58
  Collimonas humicola GW821-FHT01A05 MPMX01_03217 DNA polymerase III subunit epsilon no data 34 42
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_2564 DNA repair nuclease with dnaQ and GIY-YIG domains (from data) strong 31 60
  Sphingobium sp. HT1-2 GFF4167 DNA polymerase III epsilon subunit (EC 2.7.7.7) no data 28 58
  Azospirillum sp. SherDot2 MPMX19_02562 DNA polymerase III subunit epsilon no data 29 61
  Dinoroseobacter shibae DFL-12 Dshi_3448 DNA polymerase III, epsilon subunit (RefSeq) strong 28 72
  Variovorax sp. SCN45 GFF953 DNA polymerase III epsilon subunit (EC 2.7.7.7) no data 31 40
  Dechlorosoma suillum PS Dsui_2481 DNA polymerase III, epsilon subunit no data 34 39
  Mycobacterium tuberculosis H37Rv Rv2191 Conserved hypothetical protein insig. 26 86
  Pseudomonas sp. S08-1 OH686_03565 DNA polymerase III, epsilon subunit no data 34 40
  Methylophilus sp. DMC18 GFF1363 hypothetical protein insig. 28 59
  Pseudomonas aeruginosa MRSN321 PFGADD_03310 dnaQ DNA polymerase III subunit epsilon no data 33 40
  Pseudomonas aeruginosa PA14 IKLFDK_08830 DNA polymerase III subunit epsilon no data 33 40
  Pseudomonas aeruginosa PUPa3 NPBIFN_03346 dnaQ DNA polymerase III subunit epsilon no data 33 40
  Rhodospirillum rubrum S1H Rru_A3611 DNA polymerase III, epsilon subunit (NCBI) no data 28 61
  Azospirillum sp. SherDot2 MPMX19_06127 DNA polymerase III subunit epsilon insig. 29 41
  Pectobacterium carotovorum WPP14 HER17_RS05470 DNA polymerase III subunit epsilon no data 32 38
  Klebsiella michiganensis M5al BWI76_RS05455 DNA polymerase III subunit epsilon no data 30 39
  Herbaspirillum seropedicae SmR1 HSERO_RS17105 DNA polymerase III subunit epsilon strong 29 61
  Pseudomonas segetis P6 ACVTMO_RS13890 dnaQ DNA polymerase III subunit epsilon no data 34 40
  Magnetospirillum magneticum AMB-1 AMB_RS10350 DNA polymerase III subunit epsilon cofit 26 68
  Bacteroides stercoris CC31F HMPREF1181_RS06940 hypothetical protein insig. 50 15
  Shewanella loihica PV-4 Shew_0050 DNA polymerase III subunit epsilon (RefSeq) insig. 35 31
  Dickeya dianthicola 67-19 HGI48_RS16165 DNA polymerase III subunit epsilon no data 31 38
  Dickeya dianthicola ME23 DZA65_RS17250 DNA polymerase III subunit epsilon no data 31 38
  Dickeya dadantii 3937 DDA3937_RS16045 DNA polymerase III subunit epsilon no data 30 38
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4047 DNA polymerase III epsilon subunit (EC 2.7.7.7) no data 30 38
  Xanthobacter sp. DMC5 GFF1991 3'-5' exonuclease DinG insig. 26 60
  Cellulophaga baltica 18 M666_RS17600 exonuclease domain-containing protein insig. 30 41
  Pseudomonas segetis P6 ACVTMO_RS01010 3'-5' exonuclease insig. 23 63
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS10195 3'-5' exonuclease sig. 30 40
  Azospirillum sp. SherDot2 MPMX19_03492 3'-5' exonuclease DinG insig. 29 41
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS07270 DNA polymerase III subunit epsilon no data 28 46
  Marinobacter adhaerens HP15 HP15_p42g30 YacC protein sig. 27 63
  Pseudomonas stutzeri RCH2 Psest_2074 DNA polymerase III, epsilon subunit, Proteobacterial no data 31 38
  Cellulophaga baltica 18 M666_RS14615 exonuclease domain-containing protein insig. 42 19
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.4032.1 DNA polymerase III epsilon subunit (EC 2.7.7.7) no data 31 38
  Magnetospirillum magneticum AMB-1 AMB_RS23000 DNA polymerase III subunit epsilon no data 27 65
  Bacteroides thetaiotaomicron VPI-5482 BT3886 hypothetical protein (NCBI ptt file) insig. 50 14
  Ralstonia sp. UNC404CL21Col ABZR87_RS07945 3'-5' exonuclease insig. 30 37
  Cupriavidus basilensis FW507-4G11 RR42_RS13585 DNA polymerase III subunit epsilon no data 30 40
  Variovorax sp. OAS795 ABID97_RS14035 DNA polymerase III subunit epsilon no data 28 40
  Vibrio cholerae E7946 ATCC 55056 CSW01_06520 3'-5' exonuclease insig. 24 63
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS07120 hypothetical protein insig. 36 21
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4954 DNA polymerase III epsilon subunit (EC 2.7.7.7) no data 31 40
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS13890 exonuclease domain-containing protein insig. 28 61
  Bacteroides ovatus ATCC 8483 BACOVA_01108 hypothetical protein insig. 47 13
  Lysobacter sp. OAE881 ABIE51_RS14095 DNA polymerase III subunit epsilon no data 30 40
  Pseudomonas orientalis W4I3 QF045_RS14770 DNA polymerase III subunit epsilon no data 31 40
  Pseudomonas lactucae CFBP13502 GEMAOFIL_02692 DNA polymerase III subunit epsilon no data 31 40
  Acidovorax sp. GW101-3H11 Ac3H11_4106 DNA polymerase III epsilon subunit (EC 2.7.7.7) no data 29 38
  Azospirillum sp. SherDot2 MPMX19_02042 3'-5' exonuclease DinG insig. 33 30
  Pseudomonas fluorescens SBW25 PFLU_RS12925 DNA polymerase III subunit epsilon no data 31 40
  Pseudomonas fluorescens SBW25-INTG PFLU_RS12925 DNA polymerase III subunit epsilon no data 31 40
  Pseudomonas simiae WCS417 PS417_12235 DNA polymerase III subunit epsilon no data 31 40
  Castellaniella sp019104865 MT123 ABCV34_RS10470 DNA polymerase III subunit epsilon no data 28 39
  Magnetospirillum magneticum AMB-1 AMB_RS10470 3'-5' exonuclease insig. 42 23
  Pseudomonas sp. SVBP6 COO64_RS19265 dnaQ DNA polymerase III subunit epsilon no data 30 39
  Kangiella aquimarina DSM 16071 B158DRAFT_1064 DNA polymerase III, epsilon subunit, Proteobacterial strong 27 58
  Erwinia tracheiphila SCR3 LU632_RS03520 3'-5' exonuclease insig. 58 12
  Bifidobacterium breve UCC2003 BBR_RS13650 3'-5' exonuclease insig. 35 37
  Xanthobacter sp. DMC5 GFF3739 DNA polymerase III subunit epsilon no data 32 40
  Pseudomonas syringae pv. syringae B728a Psyr_1764 DNA polymerase III, epsilon subunit no data 29 42
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1764 DNA polymerase III, epsilon subunit no data 29 42