Homologs of GFF3490 from Hydrogenophaga sp. GW460-11-11-14-LB1

Predicted transcriptional regulators
SEED: Predicted transcriptional regulators

193 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF3490 Predicted transcriptional regulators no data 100 100
o Pseudomonas aeruginosa PA14 IKLFDK_12720 transcriptional regulator sig. 75 95
o Castellaniella sp019104865 MT123 ABCV34_RS15905 helix-turn-helix transcriptional regulator no data 72 98
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1294.1 hypothetical protein insig. 59 84
  Pseudomonas simiae WCS417 PS417_24885 transcriptional regulator strong 49 79
  Paraburkholderia sabiae LMG 24235 QEN71_RS34765 helix-turn-helix transcriptional regulator insig. 48 70
  Herbaspirillum seropedicae SmR1 HSERO_RS11685 transcription factor no data 37 85
  Variovorax sp. SCN45 GFF1264 Transcriptional regulator, Xre family insig. 41 71
  Shewanella oneidensis MR-1 SO3867 transcriptional regulator, Cro/CI family (NCBI ptt file) insig. 42 67
  Acidovorax sp. GW101-3H11 Ac3H11_4306 Predicted transcriptional regulators insig. 45 72
  Dickeya dadantii 3937 DDA3937_RS13775 helix-turn-helix transcriptional regulator insig. 47 65
  Dickeya dianthicola ME23 DZA65_RS07685 helix-turn-helix transcriptional regulator insig. 47 65
  Pseudomonas simiae WCS417 PS417_09820 Cro/Cl family transcriptional regulator no data 47 60
  Burkholderia phytofirmans PsJN BPHYT_RS35975 Xre family transcriptional regulator insig. 36 72
  Variovorax sp. OAS795 ABID97_RS23605 helix-turn-helix transcriptional regulator insig. 53 55
  Cupriavidus basilensis FW507-4G11 RR42_RS25810 DNA-binding protein insig. 42 63
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS21935 helix-turn-helix domain-containing protein sig. 39 70
  Ralstonia sp. UNC404CL21Col ABZR87_RS18270 XRE family transcriptional regulator insig. 38 69
  Alteromonas macleodii MIT1002 MIT1002_02112 anaerobic benzoate catabolism transcriptional regulator insig. 38 60
  Pseudomonas stutzeri RCH2 Psest_3408 Predicted transcriptional regulators sig. 39 67
  Shewanella sp. ANA-3 Shewana3_3803 XRE family transcriptional regulator (RefSeq) cofit 39 70
  Pantoea sp. MT58 IAI47_18980 helix-turn-helix domain-containing protein sig. 34 74
  Escherichia coli ECRC100 OKFHMN_11715 hipB Transcriptional regulator, contains XRE-family HTH domain cofit 40 73
  Escherichia coli ECRC101 MCAODC_02230 hipB Transcriptional regulator, contains XRE-family HTH domain insig. 40 73
  Escherichia coli ECRC102 NIAGMN_09565 hipB Transcriptional regulator, contains XRE-family HTH domain insig. 40 73
  Escherichia coli ECRC99 KEDOAH_16430 hipB Transcriptional regulator, contains XRE-family HTH domain no data 40 73
  Ralstonia solanacearum GMI1000 RS_RS11670 XRE family transcriptional regulator insig. 49 55
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS20215 transcriptional regulator insig. 37 61
  Herbaspirillum seropedicae SmR1 HSERO_RS00085 transcriptional regulator insig. 41 66
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS14960 XRE family transcriptional regulator insig. 41 58
  Ralstonia solanacearum UW163 UW163_RS12430 XRE family transcriptional regulator no data 41 58
  Pseudomonas fluorescens SBW25 PFLU_RS10405 helix-turn-helix transcriptional regulator insig. 49 51
  Pseudomonas fluorescens SBW25-INTG PFLU_RS10405 helix-turn-helix transcriptional regulator insig. 49 51
  Dickeya dadantii 3937 DDA3937_RS21910 helix-turn-helix transcriptional regulator insig. 36 64
  Dickeya dianthicola 67-19 HGI48_RS08550 helix-turn-helix transcriptional regulator insig. 36 64
  Rhodospirillum rubrum S1H Rru_A2614 Transcriptional Regulator, XRE family with Cupin sensor domain (NCBI) insig. 34 70
  Dickeya dadantii 3937 DDA3937_RS04070 helix-turn-helix transcriptional regulator strong 40 60
  Pseudomonas protegens RBAN4 FABNJH_20830 DNA-binding protein no data 40 63
  Azospirillum brasilense Sp245 AZOBR_RS25390 transcriptional regulator insig. 40 63
  Dickeya dadantii 3937 DDA3937_RS08405 helix-turn-helix transcriptional regulator no data 40 60
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.2495.1 hypothetical protein sig. 55 40
  Pseudomonas sp. S08-1 OH686_23020 Transcriptional regulator, Xre family insig. 45 58
  Dickeya dianthicola 67-19 HGI48_RS08545 helix-turn-helix transcriptional regulator insig. 43 55
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF5451 hypothetical protein insig. 43 60
  Ralstonia solanacearum PSI07 RPSI07_RS18415 XRE family transcriptional regulator insig. 39 58
  Rahnella sp. WP5 EX31_RS05710 helix-turn-helix transcriptional regulator insig. 31 74
  Escherichia coli Nissle 1917 ECOLIN_RS26340 helix-turn-helix transcriptional regulator cofit 44 64
  Dechlorosoma suillum PS Dsui_2833 putative transcriptional regulator insig. 40 75
  Pseudomonas sp. DMC3 GFF3394 hypothetical protein cofit 40 74
  Acidovorax sp. GW101-3H11 Ac3H11_839 transcriptional regulator, MerR family insig. 50 50
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS01775 helix-turn-helix transcriptional regulator no data 36 61
  Rhodanobacter denitrificans MT42 LRK55_RS10465 helix-turn-helix transcriptional regulator cofit 34 64
  Caulobacter crescentus NA1000 CCNA_02789 Xre-family transcriptional regulator insig. 38 64
  Caulobacter crescentus NA1000 Δfur CCNA_02789 Xre-family transcriptional regulator cofit 38 64
  Pseudomonas simiae WCS417 PS417_24905 DNA-binding protein sig. 35 75
  Paraburkholderia sabiae LMG 24235 QEN71_RS16640 XRE family transcriptional regulator insig. 46 50
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS16450 helix-turn-helix transcriptional regulator insig. 45 51
  Kangiella aquimarina DSM 16071 B158DRAFT_1468 Predicted transcriptional regulators insig. 36 61
  Rhodopseudomonas palustris CGA009 TX73_013495 XRE family transcriptional regulator insig. 35 68
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS19390 XRE family transcriptional regulator sig. 33 70
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_5820 Transcriptional regulator, Cro/CI family strong 37 78
  Phaeobacter inhibens DSM 17395 PGA1_c34340 putative HTH-type transcriptional regulator sig. 34 67
  Sphingomonas koreensis DSMZ 15582 Ga0059261_1417 transcriptional regulator, XRE family strong 42 52
  Paraburkholderia sabiae LMG 24235 QEN71_RS33370 XRE family transcriptional regulator insig. 37 71
  Ralstonia solanacearum GMI1000 RS_RS05775 XRE family transcriptional regulator insig. 38 58
  Agrobacterium fabrum C58 Atu0245 transcriptional regulator insig. 34 76
  Klebsiella pneumoniae MKP103 KDGMDA_23030 LacI family transcriptional regulator insig. 33 81
  Klebsiella pneumoniae MRSN742743 GJGHJB_02270 hipB Transcriptional regulator cofit 33 81
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13516_RS19435 helix-turn-helix domain-containing protein cofit 30 74
  Ralstonia solanacearum PSI07 RPSI07_RS25065 XRE family transcriptional regulator insig. 34 92
  Ralstonia solanacearum GMI1000 RS_RS21755 XRE family transcriptional regulator sig. 34 65
  Klebsiella michiganensis M5al BWI76_RS13480 XRE family transcriptional regulator sig. 33 81
  Rhodopseudomonas palustris CGA009 TX73_011590 helix-turn-helix transcriptional regulator insig. 32 68
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13516_RS21110 helix-turn-helix domain-containing protein cofit 32 72
  Alteromonas macleodii MIT1002 MIT1002_00748 DNA-binding transcriptional repressor PuuR insig. 25 71
  Ralstonia solanacearum PSI07 RPSI07_RS22035 XRE family transcriptional regulator insig. 38 67
  Desulfovibrio vulgaris Miyazaki F DvMF_0794 transcriptional regulator, XRE family (RefSeq) strong 36 67
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS15920 XRE family transcriptional regulator no data 34 70
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS23520 XRE family transcriptional regulator no data 34 70
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13516_RS10435 helix-turn-helix domain-containing protein cofit 33 63
  Enterobacter asburiae PDN3 EX28DRAFT_1040 Cupin domain/Helix-turn-helix insig. 32 81
  Methanococcus maripaludis S2 MMP_RS01155 XRE family transcriptional regulator strong 26 75
  Variovorax sp. SCN45 GFF3233 hypothetical protein no data 41 67
  Pseudomonas syringae pv. syringae B728a Psyr_3250 Helix-turn-helix motif protein insig. 38 69
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3250 Helix-turn-helix motif protein insig. 38 69
  Rhizobium sp. OAE497 ABIE40_RS24480 XRE family transcriptional regulator cofit 35 75
  Pseudomonas protegens RBAN4 FABNJH_13660 DNA-binding domain/cupin domain protein insig. 35 78
  Serratia liquefaciens MT49 IAI46_09015 helix-turn-helix transcriptional regulator no data 34 74
  Pseudomonas fluorescens FW300-N2C3 AO356_06745 DNA-binding protein sig. 31 70
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3201 Transcriptional regulator, MerR family strong 31 70
  Vibrio cholerae E7946 ATCC 55056 CSW01_09830 XRE family transcriptional regulator insig. 29 79
  Pantoea sp. MT58 IAI47_10265 helix-turn-helix domain-containing protein insig. 33 63
  Ralstonia solanacearum GMI1000 RS_RS23520 XRE family transcriptional regulator no data 29 73
  Ralstonia solanacearum GMI1000 RS_RS23650 XRE family transcriptional regulator no data 29 73
  Cellulophaga baltica 18 M666_RS06305 helix-turn-helix transcriptional regulator insig. 38 64
  Caulobacter crescentus NA1000 CCNA_02788 Xre-family transcriptional regulator insig. 36 70
  Caulobacter crescentus NA1000 Δfur CCNA_02788 Xre-family transcriptional regulator cofit 36 70
  Sphingomonas koreensis DSMZ 15582 Ga0059261_2584 Predicted transcriptional regulators insig. 27 65
  Cupriavidus basilensis FW507-4G11 RR42_RS35135 transcriptional regulator insig. 36 64
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.5040.1 Transcriptional regulator no data 42 50
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS23980 XRE family transcriptional regulator insig. 35 65
  Pseudomonas lactucae CFBP13502 GEMAOFIL_03682 HTH-type transcriptional regulator SutR cofit 35 74
  Acidovorax sp. GW101-3H11 Ac3H11_1308 Transcriptional regulator no data 44 50
  Cupriavidus basilensis FW507-4G11 RR42_RS21695 DNA-binding protein sig. 37 65
  Pseudomonas fluorescens FW300-N2E3 AO353_24180 transcriptional regulator sig. 35 65
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF1204 Regulatory protein of benzoate catabolism strong 34 64
  Serratia liquefaciens MT49 IAI46_16830 helix-turn-helix transcriptional regulator insig. 34 76
  Pantoea sp. MT58 IAI47_20745 helix-turn-helix transcriptional regulator sig. 32 72
  Ralstonia sp. UNC404CL21Col ABZR87_RS22690 XRE family transcriptional regulator insig. 29 65
  Sinorhizobium meliloti 1021 SMc02184 transcriptional regulator insig. 37 66
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01814 transcriptional regulator, XRE family with cupin sensor insig. 35 59
  Pseudomonas fluorescens FW300-N2E3 AO353_21480 Cro/Cl family transcriptional regulator strong 35 75
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2595 Transcriptional regulator yidN, Cro/CI family insig. 27 78
  Rahnella sp. WP5 EX31_RS21645 XRE family transcriptional regulator insig. 31 73
  Ralstonia solanacearum PSI07 RPSI07_RS09355 XRE family transcriptional regulator sig. 30 82
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS01430 helix-turn-helix transcriptional regulator no data 47 47
  Variovorax sp. SCN45 GFF5178 Transcriptional regulator, Xre-family with cupin domain insig. 42 63
  Ralstonia sp. UNC404CL21Col ABZR87_RS07155 helix-turn-helix transcriptional regulator insig. 38 57
  Enterobacter sp. TBS_079 MPMX20_02411 hypothetical protein insig. 33 75
  Sphingomonas koreensis DSMZ 15582 Ga0059261_2607 transcriptional regulator, XRE family with cupin sensor sig. 30 66
  Pseudomonas segetis P6 ACVTMO_RS21690 helix-turn-helix transcriptional regulator no data 39 51
  Pseudomonas aeruginosa MRSN321 PFGADD_00880 Helix-turn-helix domain-containing protein sig. 37 66
  Pseudomonas aeruginosa PA14 IKLFDK_21015 transcriptional regulator insig. 37 66
  Pseudomonas aeruginosa PUPa3 NPBIFN_00885 Helix-turn-helix domain-containing protein sig. 37 66
  Collimonas humicola GW821-FHT01A05 MPMX01_01998 HTH-type transcriptional regulator SutR sig. 35 54
  Serratia liquefaciens MT49 IAI46_07410 helix-turn-helix transcriptional regulator insig. 33 82
  Klebsiella pneumoniae MKP103 KDGMDA_23150 XRE family transcriptional regulator insig. 32 61
  Klebsiella pneumoniae MRSN742743 GJGHJB_02246 hipB Cro/CI family transcriptional regulator sig. 32 61
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS07920 XRE family transcriptional regulator cofit 27 88
  Ralstonia solanacearum UW163 UW163_RS05705 XRE family transcriptional regulator sig. 27 88
  Acidovorax sp. GW101-3H11 Ac3H11_3681 hypothetical protein insig. 42 45
  Pseudomonas lactucae CFBP13502 GEMAOFIL_03889 HTH-type transcriptional regulator SutR insig. 39 64
  Pseudomonas sp. BP01 JOY50_RS12560 helix-turn-helix domain-containing protein insig. 36 77
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04234 transcriptional regulator, XRE family with cupin sensor insig. 33 72
  Paraburkholderia graminis OAS925 ABIE53_003474 transcriptional regulator with XRE-family HTH domain insig. 33 72
  Ralstonia solanacearum UW163 UW163_RS11585 XRE family transcriptional regulator insig. 33 69
  Pectobacterium carotovorum WPP14 HER17_RS21700 XRE family transcriptional regulator cofit 28 74
  Rhodanobacter sp. FW510-T8 OKGIIK_16665 Transcriptional regulator sig. 47 47
  Cupriavidus basilensis FW507-4G11 RR42_RS05700 hypothetical protein insig. 37 71
  Pseudomonas fluorescens FW300-N2C3 AO356_23290 Cro/Cl family transcriptional regulator sig. 36 75
  Variovorax sp. OAS795 ABID97_RS06760 XRE family transcriptional regulator insig. 36 70
  Burkholderia phytofirmans PsJN BPHYT_RS16515 2-hydroxyacid dehydrogenase insig. 33 72
  Shewanella loihica PV-4 Shew_0970 XRE family transcriptional regulator (RefSeq) strong 31 68
  Bosea sp. OAE506 ABIE41_RS03270 XRE family transcriptional regulator insig. 29 65
  Klebsiella michiganensis M5al BWI76_RS13370 hypothetical protein insig. 29 73
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.2490.1 hypothetical protein insig. 49 41
  Pseudomonas sp. RS175 PFR28_02400 hypothetical protein sig. 35 75
  Rhodanobacter denitrificans MT42 LRK55_RS06710 helix-turn-helix transcriptional regulator cofit 44 47
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS06970 helix-turn-helix transcriptional regulator sig. 44 47
  Pseudomonas putida KT2440 PP_5618 putative Cro/CI transcriptional regulator sig. 37 76
  Dickeya dadantii 3937 DDA3937_RS07775 helix-turn-helix transcriptional regulator insig. 29 78
  Ralstonia solanacearum PSI07 RPSI07_RS09440 helix-turn-helix domain-containing protein insig. 38 69
  Rhizobium sp. OAE497 ABIE40_RS01060 XRE family transcriptional regulator insig. 37 59
  Rhizobium sp. OAE497 ABIE40_RS30095 helix-turn-helix domain-containing protein no data 35 54
  Dickeya dadantii 3937 DDA3937_RS01955 helix-turn-helix domain-containing protein insig. 34 64
  Ralstonia sp. UNC404CL21Col ABZR87_RS06145 XRE family transcriptional regulator insig. 33 59
  Pseudomonas sp. FW215-L2 GFF3754 HTH-type transcriptional regulator SutR insig. 32 63
  Rhodopseudomonas palustris CGA009 TX73_024880 helix-turn-helix transcriptional regulator cofit 31 75
  Shewanella sp. ANA-3 Shewana3_0319 XRE family transcriptional regulator (RefSeq) strong 30 64
  Methanococcus maripaludis JJ MMJJ_RS04940 XRE family transcriptional regulator insig. 28 75
  Methanococcus maripaludis S2 MMP_RS00545 XRE family transcriptional regulator insig. 28 75
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS15135 helix-turn-helix transcriptional regulator no data 40 47
  Xanthobacter sp. DMC5 GFF1030 HTH-type transcriptional regulator SutR insig. 26 80
  Pseudomonas orientalis W4I3 QF045_RS11955 helix-turn-helix transcriptional regulator no data 38 67
  Ralstonia solanacearum GMI1000 RS_RS15735 XRE family transcriptional regulator insig. 38 69
  Pseudomonas lactucae CFBP13502 GEMAOFIL_02028 hypothetical protein cofit 39 67
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS07835 helix-turn-helix domain-containing protein insig. 39 61
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_541 Transcriptional regulator, Cro/CI family insig. 33 75
  Variovorax sp. OAS795 ABID97_RS03110 helix-turn-helix transcriptional regulator strong 33 67
  Phaeobacter inhibens DSM 17395 PGA1_c28440 putative transcriptional regulator insig. 33 64
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS08105 XRE family transcriptional regulator insig. 32 74
  Sinorhizobium meliloti 1021 SMa1076 hypothetical protein insig. 29 80
  Azospirillum sp. SherDot2 MPMX19_02581 HTH-type transcriptional regulator SutR insig. 28 75
  Cupriavidus basilensis FW507-4G11 RR42_RS28290 DNA-binding protein strong 26 75
  Pseudomonas putida KT2440 PP_2232 XRE family transcriptional regulator sig. 37 71
  Paraburkholderia graminis OAS925 ABIE53_005446 XRE family aerobic/anaerobic benzoate catabolism transcriptional regulator insig. 33 64
  Phaeobacter inhibens DSM 17395 PGA1_c14960 putative transcriptional regulator sig. 35 63
  Escherichia coli ECRC100 OKFHMN_28185 hipB transcriptional regulator no data 32 65
  Escherichia coli ECRC101 MCAODC_21985 hipB transcriptional regulator insig. 32 65
  Escherichia coli ECRC102 NIAGMN_28035 hipB transcriptional regulator no data 32 65
  Escherichia coli ECRC98 JDDGAC_06315 hipB transcriptional regulator sig. 32 65
  Escherichia coli ECRC99 KEDOAH_25120 hipB transcriptional regulator no data 32 65
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS14665 XRE family transcriptional regulator strong 29 82
  Ralstonia solanacearum UW163 UW163_RS12135 XRE family transcriptional regulator insig. 29 82
  Serratia liquefaciens MT49 IAI46_11440 helix-turn-helix transcriptional regulator insig. 27 78
  Escherichia coli BL21 ECD_01392 putative DNA-binding transcriptional regulator no data 26 73
  Escherichia fergusonii Becca EFB2_02548 HTH-type transcriptional regulator SutR insig. 26 73
  Escherichia coli ECOR27 NOLOHH_19280 sutR DNA-binding transcriptional regulator SutR insig. 26 73
  Escherichia coli ECOR38 HEPCGN_26215 sutR DNA-binding transcriptional regulator SutR insig. 26 73
  Escherichia coli ECRC62 BNILDI_17730 sutR DNA-binding transcriptional regulator SutR insig. 26 73
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_02281 HTH-type transcriptional regulator SutR insig. 26 73
  Escherichia coli Nissle 1917 ECOLIN_RS08275 DNA-binding transcriptional regulator SutR no data 26 73
  Escherichia coli BW25113 b1434 ydcN predicted DNA-binding transcriptional regulator (NCBI) insig. 26 73