Homologs of A4249_RS08530 from Brevundimonas sp. GW460-12-10-14-LB2

RNA polymerase-binding protein DksA
SEED: C4-type zinc finger protein, DksA/TraR family
KEGG: DnaK suppressor protein

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS08530 RNA polymerase-binding protein DksA strong 100 100
o Bosea sp. OAE506 ABIE41_RS13460 RNA polymerase-binding protein DksA strong 73 90
o Rhodopseudomonas palustris CGA009 TX73_020255 RNA polymerase-binding protein DksA strong 75 90
o Caulobacter crescentus NA1000 CCNA_02663 DnaK suppressor protein DksA strong 77 88
o Caulobacter crescentus NA1000 Δfur CCNA_02663 DnaK suppressor protein DksA cofit 77 88
o Dinoroseobacter shibae DFL-12 Dshi_1884 transcriptional regulator, TraR/DksA family (RefSeq) no data 74 90
o Rhizobium sp. OAE497 ABIE40_RS10345 RNA polymerase-binding protein DksA strong 70 90
o Phaeobacter inhibens DSM 17395 PGA1_c11040 dnaK suppressor protein DksA strong 69 90
o Agrobacterium fabrum C58 Atu1359 dnaK deletion suppressor protein strong 68 90
o Sphingomonas koreensis DSMZ 15582 Ga0059261_0274 transcriptional regulator, TraR/DksA family strong 71 90
o Rhodospirillum rubrum S1H Rru_A2847 Transcriptional regulators, TraR/DksA family (NCBI) cofit 69 90
o Sinorhizobium meliloti 1021 SMc00469 DnaK suppressor protein no data 65 90
o Magnetospirillum magneticum AMB-1 AMB_RS19350 RNA polymerase-binding protein DksA no data 66 90
o Azospirillum sp. SherDot2 MPMX19_01492 RNA polymerase-binding transcription factor DksA insig. 65 90
o Azospirillum brasilense Sp245 AZOBR_RS11245 molecular chaperone DnaK no data 65 90
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS08750 RNA polymerase-binding protein DksA no data 56 92
  Rhodanobacter denitrificans MT42 LRK55_RS02195 RNA polymerase-binding protein DksA no data 57 84
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS02440 RNA polymerase-binding protein DksA strong 57 84
  Rhodanobacter sp. FW510-T8 OKGIIK_09500 dksA RNA polymerase-binding protein DksA insig. 56 84
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.2307.1 C4-type zinc finger protein, DksA/TraR family no data 51 90
  Variovorax sp. OAS795 ABID97_RS06170 RNA polymerase-binding protein DksA no data 51 84
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF550 C4-type zinc finger protein, DksA/TraR family sig. 52 87
o Ralstonia solanacearum PSI07 RPSI07_RS23720 RNA polymerase-binding protein DksA strong 55 84
o Paraburkholderia graminis OAS925 ABIE53_000423 DnaK suppressor protein strong 56 84
o Castellaniella sp019104865 MT123 ABCV34_RS13420 RNA polymerase-binding protein DksA no data 53 84
  Variovorax sp. SCN45 GFF4486 DksA family protein PA5536 (no Zn-finger) no data 52 84
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS09645 RNA polymerase-binding protein DksA strong 52 84
o Ralstonia solanacearum UW163 UW163_RS03935 RNA polymerase-binding protein DksA insig. 52 84
  Lysobacter sp. OAE881 ABIE51_RS13450 RNA polymerase-binding protein DksA no data 50 90
o Ralstonia solanacearum GMI1000 RS_RS00230 RNA polymerase-binding protein DksA cofit 52 84
  Acidovorax sp. GW101-3H11 Ac3H11_2002 C4-type zinc finger protein, DksA/TraR family insig. 51 87
o Burkholderia phytofirmans PsJN BPHYT_RS01640 molecular chaperone DnaK no data 55 84
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_02205 transcriptional regulator, TraR/DksA family insig. 55 84
o Paraburkholderia sabiae LMG 24235 QEN71_RS00340 RNA polymerase-binding protein DksA no data 55 84
o Ralstonia sp. UNC404CL21Col ABZR87_RS05100 RNA polymerase-binding protein DksA strong 52 84
o Cupriavidus basilensis FW507-4G11 RR42_RS01030 molecular chaperone DnaK no data 53 84
o Escherichia coli BL21 ECD_00144 transcriptional regulator of rRNA transcription; DnaK suppressor protein no data 43 96
o Escherichia fergusonii Becca EFB2_03899 RNA polymerase-binding transcription factor DksA strong 43 96
o Escherichia coli ECOR27 NOLOHH_02690 dksA RNA polymerase-binding protein DksA no data 43 96
o Escherichia coli ECOR38 HEPCGN_08295 dksA RNA polymerase-binding protein DksA strong 43 96
o Escherichia coli ECRC101 OKFHMN_10345 dksA RNA polymerase-binding protein DksA strong 43 96
o Escherichia coli ECRC101 MCAODC_00860 dksA RNA polymerase-binding protein DksA strong 43 96
o Escherichia coli ECRC102 NIAGMN_08195 dksA RNA polymerase-binding protein DksA strong 43 96
o Escherichia coli ECRC62 BNILDI_08980 dksA RNA polymerase-binding protein DksA insig. 43 96
o Escherichia coli ECRC98 JDDGAC_13940 dksA RNA polymerase-binding protein DksA no data 43 96
o Escherichia coli ECRC99 KEDOAH_17810 dksA RNA polymerase-binding protein DksA no data 43 96
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_03517 RNA polymerase-binding transcription factor DksA sig. 43 96
  Escherichia coli Nissle 1917 ECOLIN_RS00800 RNA polymerase-binding protein DksA no data 43 96
o Escherichia coli Nissle 1917 ECOLIN_RS00815 RNA polymerase-binding protein DksA no data 43 96
o Enterobacter asburiae PDN3 EX28DRAFT_3734 transcriptional regulator, TraR/DksA family no data 43 96
o Enterobacter sp. TBS_079 MPMX20_00831 RNA polymerase-binding transcription factor DksA strong 43 96
o Escherichia coli BW25113 b0145 dksA DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) strong 43 96
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF87 C4-type zinc finger protein, DksA/TraR family insig. 43 96
o Erwinia tracheiphila SCR3 LU632_RS20080 dksA RNA polymerase-binding protein DksA no data 44 96
o Klebsiella michiganensis M5al BWI76_RS05015 transcriptional regulator strong 46 88
o Herbaspirillum seropedicae SmR1 HSERO_RS00840 molecular chaperone DnaK no data 48 87
o Rahnella sp. WP5 EX31_RS03250 RNA polymerase-binding protein DksA strong 43 96
o Pseudomonas stutzeri RCH2 Psest_1003 RNA polymerase-binding protein DksA no data 46 88
o Pectobacterium carotovorum WPP14 HER17_RS05580 RNA polymerase-binding protein DksA strong 43 96
  Acinetobacter radioresistens SK82 MPMX26_00177 RNA polymerase-binding transcription factor DksA strong 46 88
o Shewanella amazonensis SB2B Sama_0780 TraR/DksA family transcriptional regulator (RefSeq) strong 45 89
o Kangiella aquimarina DSM 16071 B158DRAFT_0056 transcriptional regulator, TraR/DksA family strong 45 89
o Dickeya dadantii 3937 DDA3937_RS15935 RNA polymerase-binding protein DksA no data 43 96
o Serratia liquefaciens MT49 IAI46_21210 RNA polymerase-binding protein DksA strong 43 96
o Dechlorosoma suillum PS Dsui_2717 RNA polymerase-binding protein DksA strong 47 88
o Pseudomonas putida KT2440 PP_4693 RNA polymerase-binding transcription factor DksA strong 46 90
o Alteromonas macleodii MIT1002 MIT1002_03690 DnaK suppressor protein strong 45 88
o Pantoea sp. MT58 IAI47_15635 RNA polymerase-binding protein DksA strong 42 96
o Pseudomonas fluorescens FW300-N2C3 AO356_16095 molecular chaperone DnaK strong 47 88
o Pseudomonas sp. RS175 PFR28_03714 RNA polymerase-binding transcription factor DksA strong 46 88
o Dickeya dianthicola 67-19 HGI48_RS16050 RNA polymerase-binding protein DksA insig. 43 96
o Dickeya dianthicola ME23 DZA65_RS17135 RNA polymerase-binding protein DksA no data 43 96
o Pseudomonas syringae pv. syringae B728a Psyr_0835 transcriptional regulator, TraR/DksA family strong 47 88
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0835 transcriptional regulator, TraR/DksA family strong 47 88
o Pseudomonas fluorescens FW300-N2E3 AO353_14420 molecular chaperone DnaK strong 47 88
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2862 C4-type zinc finger protein, DksA/TraR family no data 46 88
o Pseudomonas sp. S08-1 OH686_17280 RNA polymerase-binding protein DksA no data 45 88
o Pseudomonas fluorescens GW456-L13 PfGW456L13_1528 C4-type zinc finger protein, DksA/TraR family insig. 47 88
o Pseudomonas simiae WCS417 PS417_23875 molecular chaperone DnaK no data 47 88
o Pseudomonas fluorescens SBW25 PFLU_RS25715 RNA polymerase-binding protein DksA strong 46 88
o Pseudomonas fluorescens SBW25-INTG PFLU_RS25715 RNA polymerase-binding protein DksA strong 46 88
o Shewanella loihica PV-4 Shew_3129 TraR/DksA family transcriptional regulator (RefSeq) no data 44 88
o Marinobacter adhaerens HP15 HP15_332 transcriptional regulator, TraR/DksA family no data 44 88
o Shewanella sp. ANA-3 Shewana3_3404 TraR/DksA family transcriptional regulator (RefSeq) sig. 42 88
o Shewanella oneidensis MR-1 SO0874 dksA DnaK suppressor protein (NCBI ptt file) no data 41 88
o Vibrio cholerae E7946 ATCC 55056 CSW01_03155 RNA polymerase-binding transcription factor DksA cofit 43 88
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_5160 C4-type zinc finger protein, DksA/TraR family strong 47 81
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1993 C4-type zinc finger protein, DksA/TraR family insig. 47 83
  Pseudomonas fluorescens SBW25 PFLU_RS29955 RNA polymerase-binding protein DksA insig. 46 88
  Pseudomonas fluorescens SBW25-INTG PFLU_RS29955 RNA polymerase-binding protein DksA insig. 46 88
  Pseudomonas sp. S08-1 OH686_23510 RNA polymerase-binding protein DksA insig. 44 88
  Pseudomonas stutzeri RCH2 Psest_0748 RNA polymerase-binding protein DksA no data 44 85
o Desulfovibrio vulgaris Miyazaki F DvMF_0008 transcriptional regulator, TraR/DksA family (RefSeq) no data 42 83
o Desulfovibrio vulgaris Hildenborough JW710 DVU2150 dksA dnaK suppressor protein, putative (TIGR) sig. 40 83
  Pseudomonas simiae WCS417 PS417_28290 molecular chaperone DnaK no data 43 74
  Serratia liquefaciens MT49 IAI46_09985 RNA polymerase-binding protein DksA insig. 41 81
  Pseudomonas putida KT2440 PP_2220 C4-type zinc finger protein, DksA/TraR family sig. 40 83
  Pseudomonas fluorescens FW300-N2E3 AO353_21400 conjugal transfer protein TraR strong 36 88
  Pseudomonas syringae pv. syringae B728a Psyr_3262 dnaK suppressor protein, putative sig. 36 88
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3262 dnaK suppressor protein, putative no data 36 88