| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Xanthomonas campestris pv. campestris strain 8004 | 1.0 | Xcc-8004.2012.1 | | Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) | 1.0 | Xcc-8004.5020.1 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | 0.77 | 13 |
| Lysobacter sp. OAE881 | 0.72 | ABIE51_RS15390 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.57 | ABIE51_RS01815 | | shikimate dehydrogenase | low | > 62 |
| Rhodanobacter sp. FW510-T8 | 0.63 | OKGIIK_03050 | purK | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.46 | OKGIIK_15365 | aroE | shikimate dehydrogenase | — | — |
| Rhodanobacter denitrificans MT42 | 0.63 | LRK55_RS13530 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.49 | LRK55_RS08360 | | shikimate dehydrogenase | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.62 | LRK54_RS13815 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.49 | LRK54_RS08595 | | shikimate dehydrogenase | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.60 | ABZR86_RS09830 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.51 | ABZR86_RS14985 | | shikimate dehydrogenase | — | — |
| Pseudomonas sp. S08-1 | 0.49 | OH686_13380 | | N5-carboxyaminoimidazole ribonucleotide synthase | 0.37 | OH686_12485 | | Shikimate 5-dehydrogenase I alpha | — | — |
| Pseudomonas sp. RS175 | 0.47 | PFR28_04495 | | N5-carboxyaminoimidazole ribonucleotide synthase | 0.39 | PFR28_04655 | | Shikimate dehydrogenase (NADP(+)) | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.46 | Pf6N2E2_4081 | | Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) | 0.38 | Pf6N2E2_4130 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | — | — |
| Pseudomonas stutzeri RCH2 | 0.46 | Psest_4068 | | phosphoribosylaminoimidazole carboxylase, PurK protein | 0.35 | Psest_0029 | | shikimate 5-dehydrogenase | — | — |
| Pseudomonas putida KT2440 | 0.46 | PP_5335 | | N5-carboxyaminoimidazole ribonucleotide synthase | 0.37 | PP_0074 | | shikimate 5-dehydrogenase | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.44 | AO356_11075 | | phosphoribosylaminoimidazole carboxylase | 0.38 | AO356_11315 | | shikimate dehydrogenase | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.44 | PfGW456L13_747 | | Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) | 0.38 | PfGW456L13_644 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | — | — |
| Pseudomonas simiae WCS417 | 0.44 | PS417_28115 | | phosphoribosylaminoimidazole carboxylase | 0.39 | PS417_00125 | | shikimate dehydrogenase | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.44 | PFLU_RS29800 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.39 | PFLU_RS00120 | | shikimate dehydrogenase | — | — |
| Pseudomonas fluorescens SBW25 | 0.44 | PFLU_RS29800 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.39 | PFLU_RS00120 | | shikimate dehydrogenase | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.43 | AO353_09935 | | phosphoribosylaminoimidazole carboxylase | 0.38 | AO353_10670 | | shikimate dehydrogenase | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.43 | Pf1N1B4_2028 | | Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) | 0.38 | Pf1N1B4_1906 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.43 | Psyr_5047 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.37 | Psyr_0025 | | shikimate dehydrogenase | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.43 | Psyr_5047 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.37 | Psyr_0025 | | shikimate dehydrogenase | — | — |
| Marinobacter adhaerens HP15 | 0.43 | HP15_2350 | | phosphoribosylaminoimidazole carboxylase ATPase subunit | 0.34 | HP15_3750 | | shikimate dehydrogenase | — | — |
| Acinetobacter radioresistens SK82 | 0.42 | MPMX26_03050 | | N5-carboxyaminoimidazole ribonucleotide synthase | 0.36 | MPMX26_02748 | | Shikimate dehydrogenase (NADP(+)) | low | > 36 |
| Caulobacter crescentus NA1000 | 0.40 | CCNA_03392 | | phosphoribosylaminoimidazole carboxylase NCAIR mutase subunit | 0.19 | CCNA_00003 | | shikimate dehydrogenase (EC 1.1.1.25) (from data) | 0.82 | 34 |
| Caulobacter crescentus NA1000 Δfur | 0.40 | CCNA_03392 | | phosphoribosylaminoimidazole carboxylase NCAIR mutase subunit | 0.19 | CCNA_00003 | | shikimate 5-dehydrogenase | low | > 67 |
| Bosea sp. OAE506 | 0.38 | ABIE41_RS09245 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.24 | ABIE41_RS04650 | | shikimate dehydrogenase | — | — |
| Rhodopseudomonas palustris CGA009 | 0.38 | TX73_021645 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.22 | TX73_022410 | | shikimate dehydrogenase | — | — |
| Azospirillum brasilense Sp245 | 0.36 | AZOBR_RS06140 | | phosphoribosylaminoimidazole carboxylase | 0.17 | AZOBR_RS01765 | | shikimate 5-dehydrogenase | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.36 | Ga0059261_1428 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.17 | Ga0059261_2194 | | shikimate dehydrogenase (EC 1.1.1.25) (from data) | — | — |
| Rhizobium sp. OAE497 | 0.36 | ABIE40_RS16070 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.22 | ABIE40_RS19250 | | shikimate dehydrogenase | — | — |
| Sinorhizobium meliloti 1021 | 0.36 | SMc04002 | | phosphoribosylaminoimidazole carboxylase ATPase subunit | 0.23 | SMc02791 | | shikimate 5-dehydrogenase | — | — |
| Agrobacterium fabrum C58 | 0.36 | Atu3755 | | phosphoribosylaminoimidazole carboxylase ATPase subunit | 0.24 | Atu0003 | | shikimate 5-dehydrogenase | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.35 | CSW01_00260 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.38 | CSW01_00280 | | shikimate dehydrogenase | low | > 62 |
| Dinoroseobacter shibae DFL-12 | 0.35 | Dshi_0680 | | phosphoribosylaminoimidazole carboxylase, ATPase subunit (RefSeq) | 0.24 | Dshi_3450 | | shikimate 5-dehydrogenase (RefSeq) | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.34 | A4249_RS08935 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.18 | A4249_RS13660 | | shikimate dehydrogenase | — | — |
| Alteromonas macleodii MIT1002 | 0.34 | MIT1002_00522 | | N5-carboxyaminoimidazole ribonucleotide synthase | 0.26 | MIT1002_00029 | | Shikimate dehydrogenase | — | — |
| Phaeobacter inhibens DSM 17395 | 0.34 | PGA1_c24870 | | phosphoribosylaminoimidazole carboxylase ATPase subunit PurK | 0.26 | PGA1_c35150 | | shikimate dehydrogenase AroE | — | — |
| Rhodospirillum rubrum S1H | 0.34 | Rru_A1051 | | Phosphoribosylaminoimidazole carboxylase, ATPase subunit (NCBI) | 0.22 | Rru_A3613 | | Quinate/Shikimate 5-dehydrogenase (NCBI) | — | — |
| Azospirillum sp. SherDot2 | 0.33 | MPMX19_01418 | | N5-carboxyaminoimidazole ribonucleotide synthase | 0.22 | MPMX19_02560 | | Shikimate dehydrogenase (NADP(+)) | — | — |
| Variovorax sp. SCN45 | 0.32 | GFF5513 | | N5-carboxyaminoimidazole ribonucleotide synthase (EC 6.3.4.18) | 0.25 | GFF4456 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | low | > 127 |
| Herbaspirillum seropedicae SmR1 | 0.32 | HSERO_RS03370 | | phosphoribosylaminoimidazole carboxylase | 0.37 | HSERO_RS01990 | | shikimate 5-dehydrogenase | — | — |
| Magnetospirillum magneticum AMB-1 | 0.31 | AMB_RS11140 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.19 | AMB_RS23010 | | shikimate dehydrogenase | — | — |
| Kangiella aquimarina DSM 16071 | 0.31 | B158DRAFT_0610 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.30 | B158DRAFT_0259 | | shikimate 5-dehydrogenase | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.31 | QEN71_RS02450 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.36 | QEN71_RS27130 | | shikimate dehydrogenase | 0.61 | 22 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.31 | H281DRAFT_04185 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.36 | H281DRAFT_06291 | | shikimate dehydrogenase (EC 1.1.1.25) | — | — |
| Castellaniella sp019104865 MT123 | 0.31 | ABCV34_RS00565 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.35 | ABCV34_RS11620 | | shikimate dehydrogenase | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.31 | GFF2770 | | Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) | 0.34 | GFF5226 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | — | — |
| Shewanella loihica PV-4 | 0.31 | Shew_1249 | | phosphoribosylaminoimidazole carboxylase, ATPase subunit (RefSeq) | 0.38 | Shew_3727 | | shikimate 5-dehydrogenase (RefSeq) | low | > 60 |
| Paraburkholderia graminis OAS925 | 0.30 | ABIE53_003423 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.35 | ABIE53_003560 | | shikimate dehydrogenase | — | — |
| Burkholderia phytofirmans PsJN | 0.30 | BPHYT_RS16245 | | phosphoribosylaminoimidazole carboxylase | 0.34 | BPHYT_RS16975 | | shikimate 5-dehydrogenase | 0.64 | 77 |
| Dechlorosoma suillum PS | 0.30 | Dsui_0091 | | phosphoribosylaminoimidazole carboxylase, PurK protein | 0.38 | Dsui_0443 | | shikimate 5-dehydrogenase | — | — |
| Variovorax sp. OAS795 | 0.30 | ABID97_RS01700 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.25 | ABID97_RS06300 | | shikimate dehydrogenase | — | — |
| Mycobacterium tuberculosis H37Rv | 0.28 | Rv3276c | | Probable phosphoribosylaminoimidazole carboxylase ATPase subunit PurK (air carboxylase) (AIRC) | 0.12 | Rv2552c | | Probable shikimate 5-dehydrogenase AroE (5-dehydroshikimate reductase) | — | — |
| Synechococcus elongatus PCC 7942 | 0.28 | Synpcc7942_1428 | purK | phosphoribosylaminoimidazole carboxylase ATPase subunit | 0.20 | Synpcc7942_2467 | aroE | shikimate 5-dehydrogenase | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.28 | RR42_RS03230 | | phosphoribosylaminoimidazole carboxylase | 0.30 | RR42_RS17645 | | shikimate dehydrogenase | — | — |
| Acidovorax sp. GW101-3H11 | 0.27 | Ac3H11_675 | | Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) | 0.29 | Ac3H11_4044 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | — | — |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.27 | Echvi_0884 | | phosphoribosylaminoimidazole carboxylase, PurK protein | 0.13 | Echvi_1145 | | Shikimate 5-dehydrogenase | — | — |
| Enterobacter asburiae PDN3 | 0.27 | EX28DRAFT_2460 | | phosphoribosylaminoimidazole carboxylase, PurK protein | 0.35 | EX28DRAFT_0046 | | shikimate dehydrogenase | — | — |
| Rahnella sp. WP5 | 0.27 | EX31_RS22620 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.37 | EX31_RS15950 | | shikimate dehydrogenase | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.27 | GFF4438 | | Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) | 0.35 | GFF2397 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | low | > 78 |
| Serratia liquefaciens MT49 | 0.27 | IAI46_05370 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.39 | IAI46_23240 | | shikimate dehydrogenase | 0.66 | 55 |
| Klebsiella michiganensis M5al | 0.27 | BWI76_RS07065 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.36 | BWI76_RS25645 | | shikimate dehydrogenase | 0.82 | 10 |
| Escherichia coli ECRC62 | 0.27 | BNILDI_22260 | purK | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.35 | BNILDI_02165 | aroE | shikimate dehydrogenase | 0.79 | 48 |
| Escherichia coli Nissle 1917 | 0.27 | ECOLIN_RS03025 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.36 | ECOLIN_RS18840 | | shikimate dehydrogenase | low | > 55 |
| Escherichia coli BL21 | 0.27 | ECD_00472 | | N5-carboxyaminoimidazole ribonucleotide synthase | 0.36 | ECD_03132 | | dehydroshikimate reductase, NAD(P)-binding | 0.54 | 42 |
| Escherichia coli ECOR38 | 0.27 | HEPCGN_06480 | purK | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.36 | HEPCGN_16385 | aroE | shikimate dehydrogenase | low | > 87 |
| Escherichia fergusonii Becca | 0.26 | EFB2_03540 | | N5-carboxyaminoimidazole ribonucleotide synthase | 0.36 | EFB2_00542 | | Shikimate dehydrogenase (NADP(+)) | low | > 86 |
| Escherichia coli BW25113 | 0.26 | b0522 | purK | phosphoribosylaminoimidazole carboxylase (NCBI) | 0.36 | b3281 | aroE | dehydroshikimate reductase, NAD(P)-binding (NCBI) | 0.82 | 22 |
| Escherichia coli ECOR27 | 0.26 | NOLOHH_00830 | purK | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.35 | NOLOHH_09355 | aroE | shikimate dehydrogenase | 0.83 | 27 |
| Escherichia coli ECRC98 | 0.26 | JDDGAC_11490 | purK | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.36 | JDDGAC_21185 | aroE | shikimate dehydrogenase | low | > 86 |
| Escherichia coli ECRC101 | 0.26 | MCAODC_27060 | purK | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.36 | MCAODC_08085 | aroE | shikimate dehydrogenase | low | > 87 |
| Escherichia coli ECRC99 | 0.26 | KEDOAH_20130 | purK | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.36 | KEDOAH_10585 | aroE | shikimate dehydrogenase | — | — |
| Escherichia coli ECRC100 | 0.26 | OKFHMN_07840 | purK | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.36 | OKFHMN_17565 | aroE | shikimate dehydrogenase | low | > 80 |
| Escherichia coli ECRC102 | 0.26 | NIAGMN_05895 | purK | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.36 | NIAGMN_15325 | aroE | shikimate dehydrogenase | — | — |
| Enterobacter sp. TBS_079 | 0.26 | MPMX20_01097 | | N5-carboxyaminoimidazole ribonucleotide synthase | 0.35 | MPMX20_04189 | | Shikimate dehydrogenase (NADP(+)) | 0.82 | 25 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.26 | OHPLBJKB_03159 | | N5-carboxyaminoimidazole ribonucleotide synthase | 0.36 | OHPLBJKB_00422 | | Shikimate dehydrogenase (NADP(+)) | low | > 73 |
| Ralstonia solanacearum GMI1000 | 0.26 | RS_RS02885 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.35 | RS_RS13890 | | shikimate dehydrogenase | — | — |
| Ralstonia sp. UNC404CL21Col | 0.26 | ABZR87_RS08090 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.36 | ABZR87_RS01605 | | shikimate dehydrogenase | — | — |
| Dickeya dadantii 3937 | 0.26 | DDA3937_RS15110 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.36 | DDA3937_RS19100 | | shikimate dehydrogenase | — | — |
| Pantoea sp. MT58 | 0.25 | IAI47_14355 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.37 | IAI47_02315 | | shikimate dehydrogenase | — | — |
| Ralstonia solanacearum UW163 | 0.25 | UW163_RS01410 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.36 | UW163_RS07680 | | shikimate dehydrogenase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.25 | RALBFv3_RS12200 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.36 | RALBFv3_RS05945 | | shikimate dehydrogenase | — | — |
| Ralstonia solanacearum PSI07 | 0.25 | RPSI07_RS21130 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.36 | RPSI07_RS11300 | | shikimate dehydrogenase | — | — |
| Dickeya dianthicola 67-19 | 0.25 | HGI48_RS15190 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.36 | HGI48_RS19190 | | shikimate dehydrogenase | — | — |
| Dickeya dianthicola ME23 | 0.25 | DZA65_RS15995 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.36 | DZA65_RS20315 | | shikimate dehydrogenase | — | — |
| Shewanella oneidensis MR-1 | 0.25 | SO3555 | purK | phosphoribosylaminoimidazole carboxylase, ATPase subunit (NCBI ptt file) | 0.40 | SO0040 | aroE | shikimate 5-dehydrogenase (NCBI ptt file) | 0.83 | 70 |
| Erwinia tracheiphila SCR3 | 0.25 | LU632_RS15250 | purK | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.34 | LU632_RS22445 | aroE | shikimate dehydrogenase | low | > 74 |
| Shewanella sp. ANA-3 | 0.24 | Shewana3_3156 | | phosphoribosylaminoimidazole carboxylase ATPase subunit (RefSeq) | 0.38 | Shewana3_0043 | aroE | shikimate 5-dehydrogenase (RefSeq) | 0.88 | 23 |
| Shewanella amazonensis SB2B | 0.24 | Sama_1063 | | phosphoribosylaminoimidazole carboxylase ATPase subunit (RefSeq) | 0.36 | Sama_0052 | | shikimate dehydrogenase (RefSeq) | low | > 62 |
| Pectobacterium carotovorum WPP14 | 0.23 | HER17_RS06470 | | 5-(carboxyamino)imidazole ribonucleotide synthase | 0.35 | HER17_RS02250 | | shikimate dehydrogenase | 0.90 | 57 |
Not shown: 4 genomes with orthologs for Xcc-8004.2012.1 only; 6 genomes with orthologs for Xcc-8004.5020.1 only