Conservation of cofitness between Xcc-8004.1710.1 and Xcc-8004.5020.1 in Xanthomonas campestris pv. campestris strain 8004

89 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.1710.1 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 1.0 Xcc-8004.5020.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.63 13
Lysobacter sp. OAE881 0.59 ABIE51_RS16065 pyrroline-5-carboxylate reductase 0.57 ABIE51_RS01815 shikimate dehydrogenase low > 62
Dyella japonica UNC79MFTsu3.2 0.49 ABZR86_RS10425 pyrroline-5-carboxylate reductase 0.51 ABZR86_RS14985 shikimate dehydrogenase 0.88 36
Rhodanobacter sp. FW510-T8 0.47 OKGIIK_11135 proC pyrroline-5-carboxylate reductase 0.46 OKGIIK_15365 aroE shikimate dehydrogenase low > 52
Pseudomonas sp. S08-1 0.46 OH686_10980 pyrroline-5-carboxylate reductase 0.37 OH686_12485 Shikimate 5-dehydrogenase I alpha 0.61 44
Rhodanobacter denitrificans FW104-10B01 0.45 LRK54_RS04260 pyrroline-5-carboxylate reductase 0.49 LRK54_RS08595 shikimate dehydrogenase low > 59
Rhodanobacter denitrificans MT42 0.45 LRK55_RS04030 pyrroline-5-carboxylate reductase 0.49 LRK55_RS08360 shikimate dehydrogenase — —
Pseudomonas stutzeri RCH2 0.44 Psest_0283 pyrroline-5-carboxylate reductase 0.35 Psest_0029 shikimate 5-dehydrogenase — —
Pseudomonas putida KT2440 0.43 PP_5095 pyrroline-5-carboxylate reductase 0.37 PP_0074 shikimate 5-dehydrogenase — —
Pseudomonas fluorescens FW300-N2E2 0.43 Pf6N2E2_4600 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 0.38 Pf6N2E2_4130 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) — —
Pseudomonas fluorescens FW300-N2C3 0.42 AO356_13420 pyrroline-5-carboxylate reductase 0.38 AO356_11315 shikimate dehydrogenase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.41 Psyr_0476 pyrroline-5-carboxylate reductase 0.37 Psyr_0025 shikimate dehydrogenase low > 86
Pseudomonas sp. RS175 0.41 PFR28_04243 Pyrroline-5-carboxylate reductase 0.39 PFR28_04655 Shikimate dehydrogenase (NADP(+)) — —
Pseudomonas syringae pv. syringae B728a 0.41 Psyr_0476 pyrroline-5-carboxylate reductase 0.37 Psyr_0025 shikimate dehydrogenase — —
Pseudomonas fluorescens FW300-N1B4 0.41 Pf1N1B4_2341 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 0.38 Pf1N1B4_1906 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) — —
Pseudomonas fluorescens FW300-N2E3 0.41 AO353_08165 pyrroline-5-carboxylate reductase 0.38 AO353_10670 shikimate dehydrogenase 0.63 42
Pseudomonas fluorescens SBW25-INTG 0.41 PFLU_RS28375 pyrroline-5-carboxylate reductase 0.39 PFLU_RS00120 shikimate dehydrogenase — —
Pseudomonas fluorescens SBW25 0.41 PFLU_RS28375 pyrroline-5-carboxylate reductase 0.39 PFLU_RS00120 shikimate dehydrogenase — —
Pseudomonas simiae WCS417 0.41 PS417_26730 pyrroline-5-carboxylate reductase 0.39 PS417_00125 shikimate dehydrogenase — —
Pseudomonas fluorescens GW456-L13 0.40 PfGW456L13_1010 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 0.38 PfGW456L13_644 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.77 51
Marinobacter adhaerens HP15 0.37 HP15_287 pyrroline-5-carboxylate reductase 0.34 HP15_3750 shikimate dehydrogenase — —
Dechlorosoma suillum PS 0.36 Dsui_0602 pyrroline-5-carboxylate reductase 0.38 Dsui_0443 shikimate 5-dehydrogenase — —
Variovorax sp. OAS795 0.35 ABID97_RS01555 pyrroline-5-carboxylate reductase 0.25 ABID97_RS06300 shikimate dehydrogenase — —
Paraburkholderia sabiae LMG 24235 0.35 QEN71_RS26600 pyrroline-5-carboxylate reductase 0.36 QEN71_RS27130 shikimate dehydrogenase 0.72 68
Kangiella aquimarina DSM 16071 0.35 B158DRAFT_0197 pyrroline-5-carboxylate reductase 0.30 B158DRAFT_0259 shikimate 5-dehydrogenase low > 40
Ralstonia sp. UNC404CL21Col 0.34 ABZR87_RS01230 pyrroline-5-carboxylate reductase 0.36 ABZR87_RS01605 shikimate dehydrogenase — —
Acidovorax sp. GW101-3H11 0.34 Ac3H11_788 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 0.29 Ac3H11_4044 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) — —
Ralstonia solanacearum GMI1000 0.34 RS_RS13440 pyrroline-5-carboxylate reductase 0.35 RS_RS13890 shikimate dehydrogenase — —
Acinetobacter radioresistens SK82 0.34 MPMX26_00572 Pyrroline-5-carboxylate reductase 0.36 MPMX26_02748 Shikimate dehydrogenase (NADP(+)) low > 36
Hydrogenophaga sp. GW460-11-11-14-LB1 0.33 GFF2806 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 0.34 GFF5226 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) low > 90
Variovorax sp. SCN45 0.33 GFF5553 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 0.25 GFF4456 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) — —
Paraburkholderia graminis OAS925 0.33 ABIE53_000840 pyrroline-5-carboxylate reductase 0.35 ABIE53_003560 shikimate dehydrogenase — —
Ralstonia solanacearum IBSBF1503 0.33 RALBFv3_RS05580 pyrroline-5-carboxylate reductase 0.36 RALBFv3_RS05945 shikimate dehydrogenase 0.52 37
Ralstonia solanacearum UW163 0.33 UW163_RS08045 pyrroline-5-carboxylate reductase 0.36 UW163_RS07680 shikimate dehydrogenase — —
Paraburkholderia bryophila 376MFSha3.1 0.33 H281DRAFT_04679 pyrroline-5-carboxylate reductase 0.36 H281DRAFT_06291 shikimate dehydrogenase (EC 1.1.1.25) — —
Ralstonia solanacearum PSI07 0.33 RPSI07_RS11720 pyrroline-5-carboxylate reductase 0.36 RPSI07_RS11300 shikimate dehydrogenase 0.61 43
Dickeya dadantii 3937 0.32 DDA3937_RS17305 pyrroline-5-carboxylate reductase 0.36 DDA3937_RS19100 shikimate dehydrogenase — —
Burkholderia phytofirmans PsJN 0.32 BPHYT_RS03490 pyrroline-5-carboxylate reductase 0.34 BPHYT_RS16975 shikimate 5-dehydrogenase — —
Shewanella sp. ANA-3 0.32 Shewana3_1193 pyrroline-5-carboxylate reductase (RefSeq) 0.38 Shewana3_0043 aroE shikimate 5-dehydrogenase (RefSeq) 0.92 28
Shewanella oneidensis MR-1 0.32 SO3354 proC pyrroline-5-carboxylate reductase (NCBI ptt file) 0.40 SO0040 aroE shikimate 5-dehydrogenase (NCBI ptt file) 0.88 61
Serratia liquefaciens MT49 0.32 IAI46_21415 pyrroline-5-carboxylate reductase 0.39 IAI46_23240 shikimate dehydrogenase low > 86
Cupriavidus basilensis FW507-4G11 0.32 RR42_RS17360 pyrroline-5-carboxylate reductase 0.30 RR42_RS17645 shikimate dehydrogenase — —
Dickeya dianthicola ME23 0.32 DZA65_RS18440 pyrroline-5-carboxylate reductase 0.36 DZA65_RS20315 shikimate dehydrogenase — —
Dickeya dianthicola 67-19 0.32 HGI48_RS17350 pyrroline-5-carboxylate reductase 0.36 HGI48_RS19190 shikimate dehydrogenase — —
Shewanella loihica PV-4 0.30 Shew_3016 pyrroline-5-carboxylate reductase (RefSeq) 0.38 Shew_3727 shikimate 5-dehydrogenase (RefSeq) low > 60
Herbaspirillum seropedicae SmR1 0.30 HSERO_RS18990 pyrroline-5-carboxylate reductase 0.37 HSERO_RS01990 shikimate 5-dehydrogenase 0.55 48
Rahnella sp. WP5 0.30 EX31_RS02690 pyrroline-5-carboxylate reductase 0.37 EX31_RS15950 shikimate dehydrogenase — —
Alteromonas macleodii MIT1002 0.30 MIT1002_03062 Pyrroline-5-carboxylate reductase 0.26 MIT1002_00029 Shikimate dehydrogenase — —
Vibrio cholerae E7946 ATCC 55056 0.30 CSW01_02450 pyrroline-5-carboxylate reductase 0.38 CSW01_00280 shikimate dehydrogenase low > 62
Shewanella amazonensis SB2B 0.30 Sama_2478 pyrroline-5-carboxylate reductase (RefSeq) 0.36 Sama_0052 shikimate dehydrogenase (RefSeq) low > 62
Pectobacterium carotovorum WPP14 0.30 HER17_RS03805 pyrroline-5-carboxylate reductase 0.35 HER17_RS02250 shikimate dehydrogenase — —
Castellaniella sp019104865 MT123 0.29 ABCV34_RS03610 pyrroline-5-carboxylate reductase 0.35 ABCV34_RS11620 shikimate dehydrogenase low > 48
Magnetospirillum magneticum AMB-1 0.28 AMB_RS02820 pyrroline-5-carboxylate reductase 0.19 AMB_RS23010 shikimate dehydrogenase — —
Azospirillum sp. SherDot2 0.28 MPMX19_01399 Pyrroline-5-carboxylate reductase 0.22 MPMX19_02560 Shikimate dehydrogenase (NADP(+)) — —
Rhodospirillum rubrum S1H 0.27 Rru_A3281 Delta 1-pyrroline-5-carboxylate reductase (NCBI) 0.22 Rru_A3613 Quinate/Shikimate 5-dehydrogenase (NCBI) — —
Agrobacterium fabrum C58 0.27 Atu2209 pyrroline-5-carboxylate reductase 0.24 Atu0003 shikimate 5-dehydrogenase — —
Azospirillum brasilense Sp245 0.27 AZOBR_RS06245 pyrroline-5-carboxylate reductase 0.17 AZOBR_RS01765 shikimate 5-dehydrogenase — —
Phaeobacter inhibens DSM 17395 0.26 PGA1_c24700 pyrroline-5-carboxylate reductase ProC 0.26 PGA1_c35150 shikimate dehydrogenase AroE — —
Synechococcus elongatus PCC 7942 0.26 Synpcc7942_2058 proC pyrroline-5-carboxylate reductase 0.20 Synpcc7942_2467 aroE shikimate 5-dehydrogenase — —
Rhodopseudomonas palustris CGA009 0.25 TX73_022630 pyrroline-5-carboxylate reductase 0.22 TX73_022410 shikimate dehydrogenase — —
Rhizobium sp. OAE497 0.25 ABIE40_RS13005 pyrroline-5-carboxylate reductase 0.22 ABIE40_RS19250 shikimate dehydrogenase — —
Escherichia fergusonii Becca 0.24 EFB2_03670 Pyrroline-5-carboxylate reductase 0.36 EFB2_00542 Shikimate dehydrogenase (NADP(+)) low > 86
Klebsiella michiganensis M5al 0.24 BWI76_RS06170 pyrroline-5-carboxylate reductase 0.36 BWI76_RS25645 shikimate dehydrogenase — —
Escherichia coli ECRC98 0.24 JDDGAC_12265 proC pyrroline-5-carboxylate reductase 0.36 JDDGAC_21185 aroE shikimate dehydrogenase 0.76 18
Escherichia coli ECRC101 0.24 MCAODC_27835 proC pyrroline-5-carboxylate reductase 0.36 MCAODC_08085 aroE shikimate dehydrogenase low > 87
Escherichia coli ECRC99 0.24 KEDOAH_19355 proC pyrroline-5-carboxylate reductase 0.36 KEDOAH_10585 aroE shikimate dehydrogenase — —
Escherichia coli ECOR38 0.24 HEPCGN_07250 proC pyrroline-5-carboxylate reductase 0.36 HEPCGN_16385 aroE shikimate dehydrogenase 0.90 4
Escherichia coli ECRC100 0.24 OKFHMN_08610 proC pyrroline-5-carboxylate reductase 0.36 OKFHMN_17565 aroE shikimate dehydrogenase 0.80 55
Escherichia coli Nissle 1917 0.24 ECOLIN_RS02345 pyrroline-5-carboxylate reductase 0.36 ECOLIN_RS18840 shikimate dehydrogenase 0.70 41
Escherichia coli ECRC102 0.24 NIAGMN_06665 proC pyrroline-5-carboxylate reductase 0.36 NIAGMN_15325 aroE shikimate dehydrogenase — —
Escherichia coli ECRC62 0.24 BNILDI_22950 proC pyrroline-5-carboxylate reductase 0.35 BNILDI_02165 aroE shikimate dehydrogenase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.24 OHPLBJKB_03288 Pyrroline-5-carboxylate reductase 0.36 OHPLBJKB_00422 Shikimate dehydrogenase (NADP(+)) low > 73
Escherichia coli ECOR27 0.24 NOLOHH_01535 proC pyrroline-5-carboxylate reductase 0.35 NOLOHH_09355 aroE shikimate dehydrogenase 0.76 74
Escherichia coli BW25113 0.24 b0386 proC pyrroline-5-carboxylate reductase (NCBI) 0.36 b3281 aroE dehydroshikimate reductase, NAD(P)-binding (NCBI) 0.87 7
Escherichia coli BL21 0.24 ECD_00333 pyrroline-5-carboxylate reductase, NAD(P)-binding 0.36 ECD_03132 dehydroshikimate reductase, NAD(P)-binding 0.68 50
Pantoea sp. MT58 0.24 IAI47_14945 pyrroline-5-carboxylate reductase 0.37 IAI47_02315 shikimate dehydrogenase — —
Enterobacter asburiae PDN3 0.23 EX28DRAFT_2585 pyrroline-5-carboxylate reductase 0.35 EX28DRAFT_0046 shikimate dehydrogenase low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.23 GFF4283 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 0.35 GFF2397 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) low > 78
Enterobacter sp. TBS_079 0.23 MPMX20_00976 Pyrroline-5-carboxylate reductase 0.35 MPMX20_04189 Shikimate dehydrogenase (NADP(+)) 0.85 43
Bosea sp. OAE506 0.21 ABIE41_RS11365 pyrroline-5-carboxylate reductase 0.24 ABIE41_RS04650 shikimate dehydrogenase — —
Dinoroseobacter shibae DFL-12 0.21 Dshi_2645 pyrroline-5-carboxylate reductase (RefSeq) 0.24 Dshi_3450 shikimate 5-dehydrogenase (RefSeq) — —
Erwinia tracheiphila SCR3 0.21 LU632_RS18995 proC pyrroline-5-carboxylate reductase 0.34 LU632_RS22445 aroE shikimate dehydrogenase 0.55 65
Mycobacterium tuberculosis H37Rv 0.20 Rv0500 Probable pyrroline-5-carboxylate reductase ProC (P5CR) (P5C reductase) 0.12 Rv2552c Probable shikimate 5-dehydrogenase AroE (5-dehydroshikimate reductase) — —
Desulfovibrio vulgaris Hildenborough JW710 0.20 DVU2332 proC pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) 0.23 DVU0115 aroE shikimate 5-dehydrogenase (TIGR) — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.20 Echvi_2635 pyrroline-5-carboxylate reductase 0.13 Echvi_1145 Shikimate 5-dehydrogenase — —
Caulobacter crescentus NA1000 0.18 CCNA_00528 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) 0.19 CCNA_00003 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.85 50
Caulobacter crescentus NA1000 Δfur 0.18 CCNA_00528 pyrroline-5-carboxylate reductase 0.19 CCNA_00003 shikimate 5-dehydrogenase low > 67
Desulfovibrio vulgaris Miyazaki F 0.16 DvMF_3161 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) 0.19 DvMF_1962 shikimate 5-dehydrogenase (RefSeq) — —
Brevundimonas sp. GW460-12-10-14-LB2 0.15 A4249_RS09840 pyrroline-5-carboxylate reductase dimerization domain-containing protein 0.18 A4249_RS13660 shikimate dehydrogenase — —
Bacteroides ovatus ATCC 8483 0.15 BACOVA_03587 pyrroline-5-carboxylate reductase 0.12 BACOVA_05065 putative shikimate dehydrogenase — —

Not shown: 7 genomes with orthologs for Xcc-8004.1710.1 only; 5 genomes with orthologs for Xcc-8004.5020.1 only