| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Xanthomonas campestris pv. campestris strain 8004 | 1.0 | Xcc-8004.1710.1 | | Pyrroline-5-carboxylate reductase (EC 1.5.1.2) | 1.0 | Xcc-8004.4620.1 | | Alanine racemase (EC 5.1.1.1) | 0.63 | 15 |
| Lysobacter sp. OAE881 | 0.59 | ABIE51_RS16065 | | pyrroline-5-carboxylate reductase | 0.25 | ABIE51_RS09255 | | alanine racemase | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.49 | ABZR86_RS10425 | | pyrroline-5-carboxylate reductase | 0.31 | ABZR86_RS08850 | | alanine racemase | — | — |
| Rhodanobacter sp. FW510-T8 | 0.47 | OKGIIK_11135 | proC | pyrroline-5-carboxylate reductase | 0.67 | OKGIIK_06670 | alr | alanine racemase | — | — |
| Pseudomonas sp. S08-1 | 0.46 | OH686_10980 | | pyrroline-5-carboxylate reductase | 0.65 | OH686_13695 | | alanine racemase | low | > 80 |
| Rhodanobacter denitrificans MT42 | 0.45 | LRK55_RS04030 | | pyrroline-5-carboxylate reductase | 0.67 | LRK55_RS00355 | | alanine racemase | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.45 | LRK54_RS04260 | | pyrroline-5-carboxylate reductase | 0.67 | LRK54_RS00585 | | alanine racemase | — | — |
| Pseudomonas stutzeri RCH2 | 0.44 | Psest_0283 | | pyrroline-5-carboxylate reductase | 0.41 | Psest_0699 | | alanine racemase | — | — |
| Pseudomonas putida KT2440 | 0.43 | PP_5095 | | pyrroline-5-carboxylate reductase | 0.64 | PP_5269 | | alanine racemase, PLP-binding | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.43 | Pf6N2E2_4600 | | Pyrroline-5-carboxylate reductase (EC 1.5.1.2) | 0.61 | Pf6N2E2_4393 | | Alanine racemase (EC 5.1.1.1) | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.42 | AO356_13420 | | pyrroline-5-carboxylate reductase | 0.62 | AO356_12630 | | alanine racemase | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.41 | Psyr_0476 | | pyrroline-5-carboxylate reductase | 0.62 | Psyr_0237 | | alanine racemase | — | — |
| Pseudomonas sp. RS175 | 0.41 | PFR28_04243 | | Pyrroline-5-carboxylate reductase | 0.61 | PFR28_04397 | | Alanine racemase | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.41 | Psyr_0476 | | pyrroline-5-carboxylate reductase | 0.62 | Psyr_0237 | | alanine racemase | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.41 | Pf1N1B4_2341 | | Pyrroline-5-carboxylate reductase (EC 1.5.1.2) | 0.62 | Pf1N1B4_2146 | | Alanine racemase (EC 5.1.1.1) | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.41 | AO353_08165 | | pyrroline-5-carboxylate reductase | 0.62 | AO353_09145 | | alanine racemase | — | — |
| Pseudomonas fluorescens SBW25 | 0.41 | PFLU_RS28375 | | pyrroline-5-carboxylate reductase | 0.62 | PFLU_RS29370 | | alanine racemase | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.41 | PFLU_RS28375 | | pyrroline-5-carboxylate reductase | 0.62 | PFLU_RS29370 | | alanine racemase | — | — |
| Pseudomonas simiae WCS417 | 0.41 | PS417_26730 | | pyrroline-5-carboxylate reductase | 0.62 | PS417_27695 | | alanine racemase | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.40 | PfGW456L13_1010 | | Pyrroline-5-carboxylate reductase (EC 1.5.1.2) | 0.62 | PfGW456L13_814 | | Alanine racemase (EC 5.1.1.1) | — | — |
| Marinobacter adhaerens HP15 | 0.37 | HP15_287 | | pyrroline-5-carboxylate reductase | 0.33 | HP15_630 | | alanine racemase | — | — |
| Dechlorosoma suillum PS | 0.36 | Dsui_0602 | | pyrroline-5-carboxylate reductase | 0.37 | Dsui_2411 | | alanine racemase | — | — |
| Variovorax sp. OAS795 | 0.35 | ABID97_RS01555 | | pyrroline-5-carboxylate reductase | 0.35 | ABID97_RS03685 | | alanine racemase | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.35 | QEN71_RS26600 | | pyrroline-5-carboxylate reductase | 0.36 | QEN71_RS06315 | | alanine racemase | — | — |
| Kangiella aquimarina DSM 16071 | 0.35 | B158DRAFT_0197 | | pyrroline-5-carboxylate reductase | 0.40 | B158DRAFT_2013 | | alanine racemase | low | > 40 |
| Ralstonia sp. UNC404CL21Col | 0.34 | ABZR87_RS01230 | | pyrroline-5-carboxylate reductase | 0.38 | ABZR87_RS11665 | | alanine racemase | — | — |
| Acidovorax sp. GW101-3H11 | 0.34 | Ac3H11_788 | | Pyrroline-5-carboxylate reductase (EC 1.5.1.2) | 0.35 | Ac3H11_3382 | | Alanine racemase, catabolic (EC 5.1.1.1) | — | — |
| Ralstonia solanacearum GMI1000 | 0.34 | RS_RS13440 | | pyrroline-5-carboxylate reductase | 0.39 | RS_RS06875 | | alanine racemase | — | — |
| Acinetobacter radioresistens SK82 | 0.34 | MPMX26_00572 | | Pyrroline-5-carboxylate reductase | 0.31 | MPMX26_01153 | | Alanine racemase | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.33 | GFF2806 | | Pyrroline-5-carboxylate reductase (EC 1.5.1.2) | 0.37 | GFF1915 | | Alanine racemase (EC 5.1.1.1) | — | — |
| Variovorax sp. SCN45 | 0.33 | GFF5553 | | Pyrroline-5-carboxylate reductase (EC 1.5.1.2) | 0.36 | GFF5109 | | Alanine racemase (EC 5.1.1.1) | — | — |
| Paraburkholderia graminis OAS925 | 0.33 | ABIE53_000840 | | pyrroline-5-carboxylate reductase | 0.37 | ABIE53_002527 | | alanine racemase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.33 | RALBFv3_RS05580 | | pyrroline-5-carboxylate reductase | 0.37 | RALBFv3_RS00205 | | alanine racemase | — | — |
| Ralstonia solanacearum UW163 | 0.33 | UW163_RS08045 | | pyrroline-5-carboxylate reductase | 0.37 | UW163_RS13535 | | alanine racemase | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.33 | H281DRAFT_04679 | | pyrroline-5-carboxylate reductase | 0.37 | H281DRAFT_00589 | | alanine racemase | — | — |
| Ralstonia solanacearum PSI07 | 0.33 | RPSI07_RS11720 | | pyrroline-5-carboxylate reductase | 0.38 | RPSI07_RS17275 | | alanine racemase | — | — |
| Dickeya dadantii 3937 | 0.32 | DDA3937_RS17305 | | pyrroline-5-carboxylate reductase | 0.39 | DDA3937_RS17510 | | alanine racemase | — | — |
| Burkholderia phytofirmans PsJN | 0.32 | BPHYT_RS03490 | | pyrroline-5-carboxylate reductase | 0.35 | BPHYT_RS12240 | | alanine racemase | — | — |
| Shewanella oneidensis MR-1 | 0.32 | SO3354 | proC | pyrroline-5-carboxylate reductase (NCBI ptt file) | 0.38 | SO3916 | alr | alanine racemase, biosynthetic (NCBI ptt file) | — | — |
| Serratia liquefaciens MT49 | 0.32 | IAI46_21415 | | pyrroline-5-carboxylate reductase | 0.38 | IAI46_22945 | | alanine racemase | low | > 86 |
| Shewanella sp. ANA-3 | 0.32 | Shewana3_1193 | | pyrroline-5-carboxylate reductase (RefSeq) | 0.37 | Shewana3_0714 | alr | alanine racemase (RefSeq) | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.32 | RR42_RS17360 | | pyrroline-5-carboxylate reductase | 0.35 | RR42_RS12035 | | alanine racemase | — | — |
| Dickeya dianthicola ME23 | 0.32 | DZA65_RS18440 | | pyrroline-5-carboxylate reductase | 0.39 | DZA65_RS18650 | | alanine racemase | — | — |
| Dickeya dianthicola 67-19 | 0.32 | HGI48_RS17350 | | pyrroline-5-carboxylate reductase | 0.39 | HGI48_RS17565 | | alanine racemase | — | — |
| Shewanella loihica PV-4 | 0.30 | Shew_3016 | | pyrroline-5-carboxylate reductase (RefSeq) | 0.37 | Shew_3277 | alr | alanine racemase (RefSeq) | — | — |
| Rahnella sp. WP5 | 0.30 | EX31_RS02690 | | pyrroline-5-carboxylate reductase | 0.39 | EX31_RS11885 | | alanine racemase | low | > 89 |
| Herbaspirillum seropedicae SmR1 | 0.30 | HSERO_RS18990 | | pyrroline-5-carboxylate reductase | 0.39 | HSERO_RS10740 | | alanine racemase | — | — |
| Shewanella amazonensis SB2B | 0.30 | Sama_2478 | | pyrroline-5-carboxylate reductase (RefSeq) | 0.38 | Sama_3057 | alr | alanine racemase (RefSeq) | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.30 | CSW01_02450 | | pyrroline-5-carboxylate reductase | 0.39 | CSW01_01955 | | alanine racemase | — | — |
| Pectobacterium carotovorum WPP14 | 0.30 | HER17_RS03805 | | pyrroline-5-carboxylate reductase | 0.39 | HER17_RS03655 | | alanine racemase | — | — |
| Alteromonas macleodii MIT1002 | 0.30 | MIT1002_03062 | | Pyrroline-5-carboxylate reductase | 0.37 | MIT1002_00544 | | Alanine racemase | — | — |
| Castellaniella sp019104865 MT123 | 0.29 | ABCV34_RS03610 | | pyrroline-5-carboxylate reductase | 0.33 | ABCV34_RS06375 | | alanine racemase | low | > 48 |
| Magnetospirillum magneticum AMB-1 | 0.28 | AMB_RS02820 | | pyrroline-5-carboxylate reductase | 0.19 | AMB_RS10575 | | alanine racemase | — | — |
| Azospirillum sp. SherDot2 | 0.28 | MPMX19_01399 | | Pyrroline-5-carboxylate reductase | 0.22 | MPMX19_06140 | | Alanine racemase, biosynthetic | — | — |
| Rhodospirillum rubrum S1H | 0.27 | Rru_A3281 | | Delta 1-pyrroline-5-carboxylate reductase (NCBI) | 0.20 | Rru_A0409 | | Alanine racemase region (NCBI) | — | — |
| Azospirillum brasilense Sp245 | 0.27 | AZOBR_RS06245 | | pyrroline-5-carboxylate reductase | 0.20 | AZOBR_RS08350 | | alanine racemase | — | — |
| Agrobacterium fabrum C58 | 0.27 | Atu2209 | | pyrroline-5-carboxylate reductase | 0.21 | Atu3292 | | alanine racemase | low | > 89 |
| Phaeobacter inhibens DSM 17395 | 0.26 | PGA1_c24700 | | pyrroline-5-carboxylate reductase ProC | 0.19 | PGA1_c10880 | | alanine racemase, biosynthetic | low | > 62 |
| Synechococcus elongatus PCC 7942 | 0.26 | Synpcc7942_2058 | proC | pyrroline-5-carboxylate reductase | 0.25 | Synpcc7942_2201 | alr | alanine racemase | — | — |
| Rhodopseudomonas palustris CGA009 | 0.25 | TX73_022630 | | pyrroline-5-carboxylate reductase | 0.21 | TX73_015960 | | alanine racemase | — | — |
| Rhizobium sp. OAE497 | 0.25 | ABIE40_RS13005 | | pyrroline-5-carboxylate reductase | 0.18 | ABIE40_RS06295 | | alanine racemase | low | > 107 |
| Klebsiella michiganensis M5al | 0.24 | BWI76_RS06170 | | pyrroline-5-carboxylate reductase | 0.40 | BWI76_RS01920 | | alanine racemase | — | — |
| Escherichia fergusonii Becca | 0.24 | EFB2_03670 | | Pyrroline-5-carboxylate reductase | 0.40 | EFB2_04547 | | Alanine racemase, biosynthetic | 0.59 | 64 |
| Escherichia coli ECRC98 | 0.24 | JDDGAC_12265 | proC | pyrroline-5-carboxylate reductase | 0.40 | JDDGAC_16560 | alr | alanine racemase | low | > 86 |
| Escherichia coli ECRC101 | 0.24 | MCAODC_27835 | proC | pyrroline-5-carboxylate reductase | 0.40 | MCAODC_03435 | alr | alanine racemase | low | > 87 |
| Escherichia coli ECOR38 | 0.24 | HEPCGN_07250 | proC | pyrroline-5-carboxylate reductase | 0.40 | HEPCGN_11540 | alr | alanine racemase | low | > 87 |
| Escherichia coli ECRC99 | 0.24 | KEDOAH_19355 | proC | pyrroline-5-carboxylate reductase | 0.40 | KEDOAH_15225 | alr | alanine racemase | — | — |
| Escherichia coli ECRC100 | 0.24 | OKFHMN_08610 | proC | pyrroline-5-carboxylate reductase | 0.40 | OKFHMN_12925 | alr | alanine racemase | low | > 80 |
| Escherichia coli ECRC102 | 0.24 | NIAGMN_06665 | proC | pyrroline-5-carboxylate reductase | 0.40 | NIAGMN_10770 | alr | alanine racemase | — | — |
| Escherichia coli Nissle 1917 | 0.24 | ECOLIN_RS02345 | | pyrroline-5-carboxylate reductase | 0.40 | ECOLIN_RS23405 | | alanine racemase | low | > 55 |
| Escherichia coli BL21 | 0.24 | ECD_00333 | | pyrroline-5-carboxylate reductase, NAD(P)-binding | 0.40 | ECD_03925 | | alanine racemase, biosynthetic, PLP-binding | low | > 61 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.24 | OHPLBJKB_03288 | | Pyrroline-5-carboxylate reductase | 0.40 | OHPLBJKB_03990 | | Alanine racemase, biosynthetic | low | > 73 |
| Escherichia coli BW25113 | 0.24 | b0386 | proC | pyrroline-5-carboxylate reductase (NCBI) | 0.40 | b4053 | alr | alanine racemase (NCBI) | low | > 76 |
| Escherichia coli ECOR27 | 0.24 | NOLOHH_01535 | proC | pyrroline-5-carboxylate reductase | 0.40 | NOLOHH_05175 | alr | alanine racemase | low | > 75 |
| Escherichia coli ECRC62 | 0.24 | BNILDI_22950 | proC | pyrroline-5-carboxylate reductase | 0.40 | BNILDI_06350 | alr | alanine racemase | low | > 75 |
| Pantoea sp. MT58 | 0.24 | IAI47_14945 | | pyrroline-5-carboxylate reductase | 0.39 | IAI47_08895 | | catabolic alanine racemase DadX | — | — |
| Enterobacter asburiae PDN3 | 0.23 | EX28DRAFT_2585 | | pyrroline-5-carboxylate reductase | 0.39 | EX28DRAFT_4259 | | alanine racemase | low | > 76 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.23 | GFF4283 | | Pyrroline-5-carboxylate reductase (EC 1.5.1.2) | 0.40 | GFF1422 | | Alanine racemase (EC 5.1.1.1) | low | > 78 |
| Enterobacter sp. TBS_079 | 0.23 | MPMX20_00976 | | Pyrroline-5-carboxylate reductase | 0.40 | MPMX20_02698 | | Alanine racemase, catabolic | low | > 85 |
| Bosea sp. OAE506 | 0.21 | ABIE41_RS11365 | | pyrroline-5-carboxylate reductase | 0.21 | ABIE41_RS17795 | | alanine racemase | — | — |
| Erwinia tracheiphila SCR3 | 0.21 | LU632_RS18995 | proC | pyrroline-5-carboxylate reductase | 0.39 | LU632_RS13065 | dadX | catabolic alanine racemase DadX | — | — |
| Dinoroseobacter shibae DFL-12 | 0.21 | Dshi_2645 | | pyrroline-5-carboxylate reductase (RefSeq) | 0.19 | Dshi_2378 | | alanine racemase (RefSeq) | — | — |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.20 | DVU2332 | proC | pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) | 0.23 | DVU0955 | alr | alanine racemase (TIGR) | — | — |
| Caulobacter crescentus NA1000 | 0.18 | CCNA_00528 | | pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) | 0.23 | CCNA_01733 | | alanine racemase | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.18 | CCNA_00528 | | pyrroline-5-carboxylate reductase | 0.23 | CCNA_01733 | | alanine racemase | low | > 67 |
| Desulfovibrio vulgaris Miyazaki F | 0.16 | DvMF_3161 | | pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) | 0.22 | DvMF_1349 | | alanine racemase (RefSeq) | low | > 51 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.15 | A4249_RS09840 | | pyrroline-5-carboxylate reductase dimerization domain-containing protein | 0.23 | A4249_RS03755 | | alanine racemase | — | — |
| Bifidobacterium breve UCC2003 | 0.09 | BBR_RS14625 | | pyrroline-5-carboxylate reductase | 0.14 | BBR_RS13170 | | alanine racemase | — | — |
Not shown: 9 genomes with orthologs for Xcc-8004.1710.1 only; 5 genomes with orthologs for Xcc-8004.4620.1 only