Conservation of cofitness between Xcc-8004.3669.1 and Xcc-8004.4287.1 in Xanthomonas campestris pv. campestris strain 8004

97 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.3669.1 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 1.0 Xcc-8004.4287.1 Arylesterase precursor (EC 3.1.1.2) 0.29 11
Lysobacter sp. OAE881 0.70 ABIE51_RS13830 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.40 ABIE51_RS18505 arylesterase low > 62
Rhodanobacter sp. FW510-T8 0.60 OKGIIK_07840 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.48 OKGIIK_10955 tesA Lysophospholipase L1 or related esterase Includes spore coat protein LipC/YcsK low > 53
Dyella japonica UNC79MFTsu3.2 0.60 ABZR86_RS07120 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.48 ABZR86_RS10165 arylesterase low > 74
Rhodanobacter denitrificans MT42 0.60 LRK55_RS16715 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.50 LRK55_RS03865 arylesterase low > 63
Rhodanobacter denitrificans FW104-10B01 0.59 LRK54_RS17000 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.49 LRK54_RS04095 arylesterase low > 59
Rhodanobacter sp000427505 FW510-R12 0.59 LRK53_RS11940 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.51 LRK53_RS05830 arylesterase low > 59
Marinobacter adhaerens HP15 0.45 HP15_790 23S rRNA 5-methyluridine methyltransferase 0.46 HP15_1384 lipolytic enzyme, G-D-S-L low > 73
Kangiella aquimarina DSM 16071 0.44 B158DRAFT_2275 23S rRNA (uracil-5-)-methyltransferase RumA 0.46 B158DRAFT_2224 Lysophospholipase L1 and related esterases low > 40
Paraburkholderia sabiae LMG 24235 0.42 QEN71_RS22225 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.42 QEN71_RS21945 arylesterase low > 153
Ralstonia sp. UNC404CL21Col 0.41 ABZR87_RS10885 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.46 ABZR87_RS12755 arylesterase low > 80
Cupriavidus basilensis FW507-4G11 0.41 RR42_RS13170 23S rRNA methyltransferase 0.44 RR42_RS09050 arylesterase low > 128
Acinetobacter radioresistens SK82 0.41 MPMX26_00538 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.45 MPMX26_02340 Esterase TesA low > 36
Methylophilus sp. DMC18 0.41 GFF916 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.49 GFF2145 Esterase TesA low > 43
Burkholderia phytofirmans PsJN 0.41 BPHYT_RS09125 23S rRNA methyltransferase 0.43 BPHYT_RS09490 arylesterase low > 109
Paraburkholderia bryophila 376MFSha3.1 0.40 H281DRAFT_00846 23S rRNA m(5)U-1939 methyltransferase 0.43 H281DRAFT_00904 (3S)-malyl-CoA thioesterase low > 103
Herbaspirillum seropedicae SmR1 0.40 HSERO_RS14825 23S rRNA methyltransferase 0.45 HSERO_RS11165 arylesterase low > 78
Ralstonia solanacearum PSI07 0.40 RPSI07_RS18130 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.43 RPSI07_RS16165 arylesterase low > 81
Ralstonia solanacearum IBSBF1503 0.40 RALBFv3_RS15245 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.43 RALBFv3_RS01310 arylesterase low > 76
Ralstonia solanacearum UW163 0.40 UW163_RS12710 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.43 UW163_RS14620 arylesterase — —
Ralstonia solanacearum GMI1000 0.40 RS_RS06055 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.44 RS_RS08685 arylesterase low > 80
Acidovorax sp. GW101-3H11 0.40 Ac3H11_2847 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.39 Ac3H11_4143 Acyl-CoA thioesterase I (EC 3.1.2.-) low > 79
Acinetobacter baumannii LAC-4 0.39 RR41_RS16085 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.44 RR41_RS08855 arylesterase low > 55
Hydrogenophaga sp. GW460-11-11-14-LB1 0.38 GFF3883 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.43 GFF4847 Arylesterase precursor (EC 3.1.1.2) low > 90
Dechlorosoma suillum PS 0.38 Dsui_1981 23S rRNA (uracil-5-)-methyltransferase RumA 0.38 Dsui_2308 lysophospholipase L1-like esterase low > 51
Variovorax sp. SCN45 0.37 GFF2841 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) 0.40 GFF1014 Arylesterase precursor (EC 3.1.1.2) low > 127
Pseudomonas stutzeri RCH2 0.36 Psest_1639 23S rRNA (uracil-5-)-methyltransferase RumA 0.45 Psest_2336 Lysophospholipase L1 and related esterases low > 67
Pseudomonas sp. DMC3 0.36 GFF4819 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.48 GFF4628 Esterase TesA low > 89
Pectobacterium carotovorum WPP14 0.35 HER17_RS04110 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.37 HER17_RS15500 multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1 low > 75
Pseudomonas lactucae CFBP13502 0.35 GEMAOFIL_04224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.49 GEMAOFIL_01814 Esterase TesA low > 93
Pseudomonas fluorescens SBW25-INTG 0.35 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.48 PFLU_RS08355 arylesterase low > 109
Pseudomonas fluorescens SBW25 0.35 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.48 PFLU_RS08355 arylesterase low > 109
Pseudomonas aeruginosa PA14 0.35 IKLFDK_04195 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.48 IKLFDK_14510 Esterase TesA low > 100
Enterobacter asburiae PDN3 0.35 EX28DRAFT_2865 23S rRNA (uracil-5-)-methyltransferase RumA 0.36 EX28DRAFT_2465 Lysophospholipase L1 and related esterases low > 76
Pseudomonas simiae WCS417 0.35 PS417_20155 23S rRNA methyltransferase 0.47 PS417_08405 esterase low > 88
Enterobacter sp. TBS_079 0.35 MPMX20_03654 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.34 MPMX20_01092 Thioesterase 1/protease 1/lysophospholipase L1 low > 85
Escherichia coli ECOR38 0.35 HEPCGN_19495 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.35 HEPCGN_06605 tesA multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1 low > 88
Escherichia coli BL21 0.35 ECD_02630 23S rRNA m(5)U1939 methyltransferase, SAM-dependent 0.36 ECD_00445 acyl-CoA thioesterase 1 and protease I and lysophospholipase L1 low > 61
Escherichia coli ECOR27 0.35 NOLOHH_12120 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.36 NOLOHH_00965 tesA multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1 low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.34 OHPLBJKB_00946 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.36 OHPLBJKB_03180 Thioesterase 1/protease 1/lysophospholipase L1 low > 74
Escherichia coli Nissle 1917 0.34 ECOLIN_RS15520 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.36 ECOLIN_RS02920 multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1 low > 55
Escherichia coli BW25113 0.34 b2785 rumA 23S rRNA (uracil-5-)-methyltransferase (NCBI) 0.36 b0494 tesA multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1 (NCBI) low > 76
Serratia liquefaciens MT49 0.34 IAI46_03595 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.36 IAI46_05345 multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1 low > 86
Escherichia coli ECRC62 0.34 BNILDI_10625 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.36 BNILDI_22385 tesA multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1 low > 75
Escherichia coli ECRC98 0.34 JDDGAC_23910 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.35 JDDGAC_11620 tesA multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1 low > 87
Escherichia coli ECRC102 0.34 NIAGMN_18015 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.35 NIAGMN_06025 tesA multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1 low > 80
Escherichia fergusonii Becca 0.34 EFB2_01132 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.36 EFB2_03561 Thioesterase 1/protease 1/lysophospholipase L1 low > 86
Escherichia coli ECRC99 0.34 KEDOAH_07885 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.35 KEDOAH_19995 tesA multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1 — —
Escherichia coli ECRC101 0.34 MCAODC_10770 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.35 MCAODC_27190 tesA multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1 low > 88
Escherichia coli ECRC100 0.34 OKFHMN_20245 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.35 OKFHMN_07975 tesA multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1 low > 79
Erwinia amylovora T8 0.34 OLJFJH_09240 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.35 OLJFJH_17655 multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1 low > 58
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.34 GFF4838 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.38 GFF4412 Arylesterase precursor (EC 3.1.1.2) low > 78
Pseudomonas fluorescens FW300-N2C3 0.34 AO356_19055 23S rRNA methyltransferase 0.46 AO356_03225 esterase low > 104
Pseudomonas fluorescens FW300-N1B4 0.34 Pf1N1B4_3507 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.47 Pf1N1B4_295 Arylesterase precursor (EC 3.1.1.2) 0.50 38
Pseudomonas sp. S08-1 0.34 OH686_18955 23S rRNA (uracil-5-)-methyltransferase RumA 0.48 OH686_01790 Arylesterase precursor low > 80
Dickeya dianthicola ME23 0.33 DZA65_RS18150 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.34 DZA65_RS06355 multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1 low > 75
Shewanella loihica PV-4 0.33 Shew_1201 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.40 Shew_2403 arylesterase (RefSeq) low > 60
Pseudomonas fluorescens FW300-N2E2 0.33 Pf6N2E2_5722 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.46 Pf6N2E2_2476 Arylesterase precursor (EC 3.1.1.2) low > 103
Klebsiella michiganensis M5al 0.33 BWI76_RS22810 23S rRNA (uracil(1939)-C(5))-methyltransferase 0.35 BWI76_RS06945 multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1 low > 92
Shewanella oneidensis MR-1 0.33 SO3456 RNA methyltransferase, TrmA family (NCBI ptt file) 0.39 SO2928 acyl-CoA thioesterase I, putative (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.33 Shewana3_1110 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.40 Shewana3_1537 GDSL family lipase (RefSeq) low > 73
Erwinia tracheiphila SCR3 0.33 LU632_RS06345 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.35 LU632_RS15265 tesA multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1 low > 74
Dickeya dadantii 3937 0.33 DDA3937_RS17020 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.34 DDA3937_RS05960 multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1 low > 74
Pseudomonas segetis P6 0.33 MPMX49_01653 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.47 MPMX49_02654 Esterase TesA low > 75
Erwinia tracheiphila HP pepo 2.2 0.33 IJEDHG_17370 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.35 IJEDHG_01040 tesA multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1 low > 61
Pseudomonas sp. RS175 0.33 PFR28_03224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.47 PFR28_00958 Esterase TesA low > 88
Dickeya dianthicola 67-19 0.33 HGI48_RS17075 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.33 HGI48_RS06010 multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1 low > 71
Vibrio cholerae E7946 ATCC 55056 0.33 CSW01_12410 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.37 CSW01_18090 multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1 low > 62
Shewanella amazonensis SB2B 0.32 Sama_1032 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.35 Sama_1485 arylesterase (RefSeq) low > 62
Rahnella sp. WP5 0.32 EX31_RS07960 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.37 EX31_RS22605 multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1 low > 89
Pseudomonas fluorescens FW300-N2E3 0.32 AO353_02715 23S rRNA methyltransferase 0.49 AO353_19005 esterase low > 101
Pantoea sp. MT58 0.32 IAI47_04115 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.37 IAI47_14370 multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1 low > 76
Pseudomonas sp. SVBP6 0.32 COO64_RS07330 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.48 COO64_RS09780 arylesterase low > 93
Pseudomonas syringae pv. syringae B728a 0.32 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase 0.48 Psyr_2068 Arylesterase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.32 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase 0.48 Psyr_2068 Arylesterase low > 86
Pseudomonas sp. BP01 0.32 JOY50_RS23905 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.46 JOY50_RS25825 arylesterase low > 84
Pantoea agglomerans CFBP13505 P0401 0.32 PagCFBP13505_RS16855 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.36 PagCFBP13505_RS10840 multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1 low > 74
Pseudomonas putida KT2440 0.32 PP_1655 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.47 PP_2318 acyl-CoA thioesterase I/protease I/lysophospholipase L1 low > 96
Pseudomonas fluorescens GW456-L13 0.31 PfGW456L13_2033 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.47 PfGW456L13_2219 Arylesterase precursor (EC 3.1.1.2) low > 87
Alteromonas macleodii MIT1002 0.26 MIT1002_00793 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.36 MIT1002_01414 Acyl-CoA thioesterase I precursor low > 70
Desulfovibrio vulgaris Miyazaki F 0.20 DvMF_1383 RNA methyltransferase, TrmA family (RefSeq) 0.27 DvMF_2220 lipolytic protein G-D-S-L family (RefSeq) low > 51
Pontibacter actiniarum KMM 6156, DSM 19842 0.18 CA264_02005 23S rRNA (uracil-5-)-methyltransferase RumA 0.30 CA264_05680 arylesterase low > 74
Desulfovibrio vulgaris Hildenborough JW710 0.17 DVU0924 rumA 23S rRNA (uracil-5-)-methyltransferase RumA (TIGR) 0.18 DVU1925 tesA lipase, GDSL family (TIGR) low > 55
Bosea sp. OAE506 0.15 ABIE41_RS22255 RNA methyltransferase 0.26 ABIE41_RS04815 arylesterase low > 77
Xanthobacter sp. DMC5 0.15 GFF893 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.23 GFF3825 hypothetical protein — —
Rhodopseudomonas palustris CGA009 0.15 TX73_004885 methyltransferase 0.29 TX73_001010 arylesterase 0.19 62
Rhizobium sp. OAE497 0.15 ABIE40_RS03880 class I SAM-dependent RNA methyltransferase 0.25 ABIE40_RS18235 arylesterase low > 107
Dinoroseobacter shibae DFL-12 0.14 Dshi_3492 (Uracil-5)-methyltransferase (RefSeq) 0.26 Dshi_2677 lipolytic protein G-D-S-L family (RefSeq) low > 64
Agrobacterium fabrum C58 0.13 Atu0735 RNA methyltransferase 0.25 Atu2679 esterase low > 89
Sinorhizobium meliloti 1021 0.13 SMc00974 RNA methyltransferase 0.27 SMc03836 acyl-CoA thioesterase i protein low > 103
Caulobacter crescentus NA1000 Δfur 0.13 CCNA_01387 tRNA (uracil-5-)-methyltransferase related protein 0.23 CCNA_01836 acyl-CoA thioesterase I/lysophospholipase low > 67
Caulobacter crescentus NA1000 0.13 CCNA_01387 tRNA (uracil-5-)-methyltransferase related protein 0.23 CCNA_01836 acyl-CoA thioesterase I/lysophospholipase low > 66
Magnetospirillum magneticum AMB-1 0.13 AMB_RS01660 class I SAM-dependent RNA methyltransferase 0.27 AMB_RS21890 arylesterase low > 64
Azospirillum brasilense Sp245 0.12 AZOBR_RS01195 RNA methyltransferase 0.29 AZOBR_RS02265 acyl-CoA thioesterase low > 97
Phaeobacter inhibens DSM 17395 0.12 PGA1_c34810 putative RNA methyltransferase 0.23 PGA1_c26370 putative acyl-CoA thioesterase low > 62
Rhodospirillum rubrum S1H 0.11 Rru_A2107 23S rRNA (uracil-5-)-methyltransferase RumA (NCBI) 0.30 Rru_A3650 Lipolytic enzyme, G-D-S-L (NCBI) — —
Azospirillum sp. SherDot2 0.11 MPMX19_02196 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.29 MPMX19_02592 Esterase TesA low > 112
Brevundimonas sp. GW460-12-10-14-LB2 0.11 A4249_RS08425 class I SAM-dependent RNA methyltransferase 0.21 A4249_RS05710 arylesterase low > 48

Not shown: 10 genomes with orthologs for Xcc-8004.3669.1 only; 3 genomes with orthologs for Xcc-8004.4287.1 only