Conservation of cofitness between Xcc-8004.1710.1 and Xcc-8004.2947.1 in Xanthomonas campestris pv. campestris strain 8004

90 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.1710.1 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 1.0 Xcc-8004.2947.1 Histidinol-phosphate aminotransferase (EC 2.6.1.9) 0.67 6
Lysobacter sp. OAE881 0.59 ABIE51_RS16065 pyrroline-5-carboxylate reductase 0.56 ABIE51_RS13320 histidinol-phosphate transaminase 0.83 43
Dyella japonica UNC79MFTsu3.2 0.49 ABZR86_RS10425 pyrroline-5-carboxylate reductase 0.48 ABZR86_RS06725 histidinol-phosphate transaminase 0.93 2
Rhodanobacter sp. FW510-T8 0.47 OKGIIK_11135 proC pyrroline-5-carboxylate reductase 0.51 OKGIIK_04955 hisC histidinol-phosphate transaminase low > 52
Rhodanobacter denitrificans FW104-10B01 0.45 LRK54_RS04260 pyrroline-5-carboxylate reductase 0.51 LRK54_RS01600 histidinol-phosphate transaminase 0.60 46
Rhodanobacter denitrificans MT42 0.45 LRK55_RS04030 pyrroline-5-carboxylate reductase 0.50 LRK55_RS01380 histidinol-phosphate transaminase — —
Pseudomonas putida KT2440 0.43 PP_5095 pyrroline-5-carboxylate reductase 0.19 PP_0967 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) 0.44 22
Pseudomonas fluorescens FW300-N2E2 0.43 Pf6N2E2_4600 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 0.19 Pf6N2E2_2519 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) — —
Pseudomonas fluorescens FW300-N2C3 0.42 AO356_13420 pyrroline-5-carboxylate reductase 0.19 AO356_03460 aspartate aminotransferase — —
Pseudomonas sp. RS175 0.41 PFR28_04243 Pyrroline-5-carboxylate reductase 0.19 PFR28_00908 Histidinol-phosphate aminotransferase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.41 Psyr_0476 pyrroline-5-carboxylate reductase 0.16 Psyr_4132 histidinol phosphate aminotransferase apoenzyme 0.76 28
Pseudomonas syringae pv. syringae B728a 0.41 Psyr_0476 pyrroline-5-carboxylate reductase 0.16 Psyr_4132 histidinol phosphate aminotransferase apoenzyme — —
Pseudomonas fluorescens FW300-N1B4 0.41 Pf1N1B4_2341 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 0.18 Pf1N1B4_349 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) — —
Pseudomonas fluorescens FW300-N2E3 0.41 AO353_08165 pyrroline-5-carboxylate reductase 0.18 AO353_02065 aspartate aminotransferase 0.42 85
Pseudomonas fluorescens SBW25-INTG 0.41 PFLU_RS28375 pyrroline-5-carboxylate reductase 0.18 PFLU_RS08100 histidinol-phosphate transaminase — —
Pseudomonas fluorescens SBW25 0.41 PFLU_RS28375 pyrroline-5-carboxylate reductase 0.18 PFLU_RS08100 histidinol-phosphate transaminase — —
Pseudomonas simiae WCS417 0.41 PS417_26730 pyrroline-5-carboxylate reductase 0.19 PS417_08130 aspartate aminotransferase low > 88
Pseudomonas fluorescens GW456-L13 0.40 PfGW456L13_1010 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 0.19 PfGW456L13_2177 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) low > 87
Marinobacter adhaerens HP15 0.37 HP15_287 pyrroline-5-carboxylate reductase 0.18 HP15_2427 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) 0.69 12
Dechlorosoma suillum PS 0.36 Dsui_0602 pyrroline-5-carboxylate reductase 0.17 Dsui_1414 histidinol-phosphate aminotransferase — —
Variovorax sp. OAS795 0.35 ABID97_RS01555 pyrroline-5-carboxylate reductase 0.20 ABID97_RS23145 histidinol-phosphate transaminase — —
Paraburkholderia sabiae LMG 24235 0.35 QEN71_RS26600 pyrroline-5-carboxylate reductase 0.21 QEN71_RS27860 histidinol-phosphate transaminase 0.66 90
Kangiella aquimarina DSM 16071 0.35 B158DRAFT_0197 pyrroline-5-carboxylate reductase 0.18 B158DRAFT_2325 histidinol-phosphate aminotransferase low > 40
Ralstonia sp. UNC404CL21Col 0.34 ABZR87_RS01230 pyrroline-5-carboxylate reductase 0.19 ABZR87_RS02495 histidinol-phosphate transaminase — —
Acidovorax sp. GW101-3H11 0.34 Ac3H11_788 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 0.17 Ac3H11_4729 histidinol-phosphate transaminase (EC 2.6.1.9) (from data) — —
Acinetobacter radioresistens SK82 0.34 MPMX26_00572 Pyrroline-5-carboxylate reductase 0.16 MPMX26_02586 Histidinol-phosphate aminotransferase 0.71 24
Ralstonia solanacearum GMI1000 0.34 RS_RS13440 pyrroline-5-carboxylate reductase 0.20 RS_RS04500 histidinol-phosphate aminotransferase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.33 GFF2806 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 0.19 GFF1313 Histidinol-phosphate aminotransferase (EC 2.6.1.9) low > 90
Paraburkholderia graminis OAS925 0.33 ABIE53_000840 pyrroline-5-carboxylate reductase 0.20 ABIE53_003700 histidinol-phosphate aminotransferase low > 113
Variovorax sp. SCN45 0.33 GFF5553 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 0.20 GFF5348 Histidinol-phosphate aminotransferase (EC 2.6.1.9) — —
Ralstonia solanacearum UW163 0.33 UW163_RS08045 pyrroline-5-carboxylate reductase 0.19 UW163_RS06775 histidinol-phosphate transaminase — —
Ralstonia solanacearum IBSBF1503 0.33 RALBFv3_RS05580 pyrroline-5-carboxylate reductase 0.19 RALBFv3_RS06840 histidinol-phosphate transaminase — —
Paraburkholderia bryophila 376MFSha3.1 0.33 H281DRAFT_04679 pyrroline-5-carboxylate reductase 0.19 H281DRAFT_05654 histidinol phosphate aminotransferase apoenzyme low > 103
Ralstonia solanacearum PSI07 0.33 RPSI07_RS11720 pyrroline-5-carboxylate reductase 0.19 RPSI07_RS10395 histidinol-phosphate transaminase — —
Dickeya dadantii 3937 0.32 DDA3937_RS17305 pyrroline-5-carboxylate reductase 0.36 DDA3937_RS09730 histidinol-phosphate transaminase 0.72 18
Burkholderia phytofirmans PsJN 0.32 BPHYT_RS03490 pyrroline-5-carboxylate reductase 0.19 BPHYT_RS17705 histidinol-phosphate aminotransferase — —
Serratia liquefaciens MT49 0.32 IAI46_21415 pyrroline-5-carboxylate reductase 0.37 IAI46_08205 histidinol-phosphate transaminase low > 86
Shewanella oneidensis MR-1 0.32 SO3354 proC pyrroline-5-carboxylate reductase (NCBI ptt file) 0.32 SO2072 hisC histidinol-phosphate aminotransferase (NCBI ptt file) 0.98 7
Shewanella sp. ANA-3 0.32 Shewana3_1193 pyrroline-5-carboxylate reductase (RefSeq) 0.33 Shewana3_1852 histidinol phosphate aminotransferase (RefSeq) 0.94 8
Cupriavidus basilensis FW507-4G11 0.32 RR42_RS17360 pyrroline-5-carboxylate reductase 0.20 RR42_RS18910 histidinol-phosphate aminotransferase — —
Dickeya dianthicola ME23 0.32 DZA65_RS18440 pyrroline-5-carboxylate reductase 0.37 DZA65_RS10050 histidinol-phosphate transaminase — —
Dickeya dianthicola 67-19 0.32 HGI48_RS17350 pyrroline-5-carboxylate reductase 0.37 HGI48_RS09740 histidinol-phosphate transaminase — —
Shewanella loihica PV-4 0.30 Shew_3016 pyrroline-5-carboxylate reductase (RefSeq) 0.31 Shew_2199 histidinol-phosphate aminotransferase (RefSeq) low > 60
Herbaspirillum seropedicae SmR1 0.30 HSERO_RS18990 pyrroline-5-carboxylate reductase 0.17 HSERO_RS20335 histidinol-phosphate aminotransferase low > 78
Rahnella sp. WP5 0.30 EX31_RS02690 pyrroline-5-carboxylate reductase 0.38 EX31_RS11445 histidinol-phosphate transaminase 0.96 23
Shewanella amazonensis SB2B 0.30 Sama_2478 pyrroline-5-carboxylate reductase (RefSeq) 0.29 Sama_1943 histidinol-phosphate aminotransferase (RefSeq) 0.95 20
Alteromonas macleodii MIT1002 0.30 MIT1002_03062 Pyrroline-5-carboxylate reductase 0.34 MIT1002_02634 Histidinol-phosphate aminotransferase 0.96 19
Pectobacterium carotovorum WPP14 0.30 HER17_RS03805 pyrroline-5-carboxylate reductase 0.36 HER17_RS12235 histidinol-phosphate transaminase — —
Vibrio cholerae E7946 ATCC 55056 0.30 CSW01_02450 pyrroline-5-carboxylate reductase 0.37 CSW01_05755 histidinol-phosphate transaminase low > 62
Castellaniella sp019104865 MT123 0.29 ABCV34_RS03610 pyrroline-5-carboxylate reductase 0.17 ABCV34_RS02645 histidinol-phosphate transaminase low > 48
Magnetospirillum magneticum AMB-1 0.28 AMB_RS02820 pyrroline-5-carboxylate reductase 0.18 AMB_RS20110 histidinol-phosphate aminotransferase — —
Azospirillum sp. SherDot2 0.28 MPMX19_01399 Pyrroline-5-carboxylate reductase 0.19 MPMX19_04389 Histidinol-phosphate aminotransferase — —
Azospirillum brasilense Sp245 0.27 AZOBR_RS06245 pyrroline-5-carboxylate reductase 0.17 AZOBR_RS20485 histidinol-phosphate aminotransferase [EC:2.6.1.9] (from data) — —
Agrobacterium fabrum C58 0.27 Atu2209 pyrroline-5-carboxylate reductase 0.16 Atu3612 histidinol-phosphate aminotransferase — —
Rhodospirillum rubrum S1H 0.27 Rru_A3281 Delta 1-pyrroline-5-carboxylate reductase (NCBI) 0.20 Rru_A3264 Histidinol-phosphate aminotransferase (NCBI) — —
Phaeobacter inhibens DSM 17395 0.26 PGA1_c24700 pyrroline-5-carboxylate reductase ProC 0.17 PGA1_c25240 histidinol-phosphate aminotransferase [EC:2.6.1.9] (from data) — —
Synechococcus elongatus PCC 7942 0.26 Synpcc7942_2058 proC pyrroline-5-carboxylate reductase 0.18 Synpcc7942_1030 hisC histidinol-phosphate aminotransferase — —
Rhodopseudomonas palustris CGA009 0.25 TX73_022630 pyrroline-5-carboxylate reductase 0.16 TX73_023035 histidinol-phosphate transaminase — —
Rhizobium sp. OAE497 0.25 ABIE40_RS13005 pyrroline-5-carboxylate reductase 0.17 ABIE40_RS17595 histidinol-phosphate transaminase 0.68 43
Klebsiella michiganensis M5al 0.24 BWI76_RS06170 pyrroline-5-carboxylate reductase 0.38 BWI76_RS18930 histidinol-phosphate transaminase — —
Escherichia fergusonii Becca 0.24 EFB2_03670 Pyrroline-5-carboxylate reductase 0.39 EFB2_01835 Histidinol-phosphate aminotransferase low > 86
Escherichia coli ECRC99 0.24 KEDOAH_19355 proC pyrroline-5-carboxylate reductase 0.39 KEDOAH_03640 hisC histidinol-phosphate transaminase — —
Escherichia coli ECRC101 0.24 MCAODC_27835 proC pyrroline-5-carboxylate reductase 0.39 MCAODC_20430 hisC histidinol-phosphate transaminase 0.90 2
Escherichia coli Nissle 1917 0.24 ECOLIN_RS02345 pyrroline-5-carboxylate reductase 0.38 ECOLIN_RS11950 histidinol-phosphate transaminase — —
Escherichia coli ECRC100 0.24 OKFHMN_08610 proC pyrroline-5-carboxylate reductase 0.39 OKFHMN_24510 hisC histidinol-phosphate transaminase 0.78 62
Escherichia coli ECOR38 0.24 HEPCGN_07250 proC pyrroline-5-carboxylate reductase 0.39 HEPCGN_03215 hisC histidinol-phosphate transaminase 0.86 16
Escherichia coli ECRC98 0.24 JDDGAC_12265 proC pyrroline-5-carboxylate reductase 0.39 JDDGAC_28620 hisC histidinol-phosphate transaminase low > 86
Escherichia coli ECRC102 0.24 NIAGMN_06665 proC pyrroline-5-carboxylate reductase 0.39 NIAGMN_22455 hisC histidinol-phosphate transaminase — —
Escherichia coli BW25113 0.24 b0386 proC pyrroline-5-carboxylate reductase (NCBI) 0.39 b2021 hisC histidinol-phosphate aminotransferase (NCBI) 0.87 10
Escherichia coli ECRC62 0.24 BNILDI_22950 proC pyrroline-5-carboxylate reductase 0.39 BNILDI_14735 hisC histidinol-phosphate transaminase 0.80 34
Escherichia coli BL21 0.24 ECD_00333 pyrroline-5-carboxylate reductase, NAD(P)-binding 0.39 ECD_01923 histidinol-phosphate aminotransferase 0.83 12
Escherichia coli HS(pFamp)R (ATCC 700891) 0.24 OHPLBJKB_03288 Pyrroline-5-carboxylate reductase 0.39 OHPLBJKB_01679 Histidinol-phosphate aminotransferase low > 73
Escherichia coli ECOR27 0.24 NOLOHH_01535 proC pyrroline-5-carboxylate reductase 0.39 NOLOHH_15825 hisC histidinol-phosphate transaminase 0.86 44
Pantoea sp. MT58 0.24 IAI47_14945 pyrroline-5-carboxylate reductase 0.37 IAI47_07085 histidinol-phosphate transaminase 0.84 14
Enterobacter asburiae PDN3 0.23 EX28DRAFT_2585 pyrroline-5-carboxylate reductase 0.36 EX28DRAFT_0538 histidinol-phosphate aminotransferase 0.68 19
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.23 GFF4283 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 0.37 GFF3911 Histidinol-phosphate aminotransferase (EC 2.6.1.9) low > 78
Enterobacter sp. TBS_079 0.23 MPMX20_00976 Pyrroline-5-carboxylate reductase 0.36 MPMX20_03003 Histidinol-phosphate aminotransferase 0.91 7
Dinoroseobacter shibae DFL-12 0.21 Dshi_2645 pyrroline-5-carboxylate reductase (RefSeq) 0.16 Dshi_2946 histidinol-phosphate aminotransferase (RefSeq) — —
Erwinia tracheiphila SCR3 0.21 LU632_RS18995 proC pyrroline-5-carboxylate reductase 0.35 LU632_RS08940 hisC histidinol-phosphate transaminase 0.59 37
Mycobacterium tuberculosis H37Rv 0.20 Rv0500 Probable pyrroline-5-carboxylate reductase ProC (P5CR) (P5C reductase) 0.16 Rv1600 Probable histidinol-phosphate aminotransferase HisC1 — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.20 Echvi_2635 pyrroline-5-carboxylate reductase 0.30 Echvi_2458 histidinol-phosphate aminotransferase 0.70 36
Desulfovibrio vulgaris Hildenborough JW710 0.20 DVU2332 proC pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) 0.19 DVU1029 hisC histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) 0.80 30
Phocaeicola dorei CL03T12C01 0.16 ABI39_RS02960 pyrroline-5-carboxylate reductase 0.32 ABI39_RS11840 histidinol-phosphate transaminase 0.70 55
Pontibacter actiniarum KMM 6156, DSM 19842 0.15 CA264_07730 pyrroline-5-carboxylate reductase 0.31 CA264_05035 histidinol-phosphate transaminase low > 74
Phocaeicola vulgatus CL09T03C04 0.15 HMPREF1058_RS08830 pyrroline-5-carboxylate reductase 0.32 HMPREF1058_RS15880 histidinol-phosphate transaminase 0.95 3
Brevundimonas sp. GW460-12-10-14-LB2 0.15 A4249_RS09840 pyrroline-5-carboxylate reductase dimerization domain-containing protein 0.18 A4249_RS11450 histidinol-phosphate transaminase low > 48
Bacteroides ovatus ATCC 8483 0.15 BACOVA_03587 pyrroline-5-carboxylate reductase 0.30 BACOVA_01233 histidinol-phosphate transaminase 0.85 43
Bacteroides stercoris CC31F 0.15 HMPREF1181_RS03440 pyrroline-5-carboxylate reductase 0.32 HMPREF1181_RS04855 histidinol-phosphate transaminase 0.95 11
Mucilaginibacter yixingensis YX-36 DSM 26809 0.14 ABZR88_RS09865 pyrroline-5-carboxylate reductase 0.33 ABZR88_RS06875 histidinol-phosphate transaminase 0.69 34
Bacteroides thetaiotaomicron VPI-5482 0.13 BT3757 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) 0.31 BT0202 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) 0.91 9
Bifidobacterium breve UCC2003 0.09 BBR_RS14625 pyrroline-5-carboxylate reductase 0.15 BBR_RS17050 histidinol-phosphate transaminase low > 34

Not shown: 6 genomes with orthologs for Xcc-8004.1710.1 only; 7 genomes with orthologs for Xcc-8004.2947.1 only