Conservation of cofitness between Xcc-8004.1205.1 and Xcc-8004.2316.1 in Xanthomonas campestris pv. campestris strain 8004

91 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.1205.1 hypothetical protein 1.0 Xcc-8004.2316.1 N-acetylornithine carbamoyltransferase (EC 2.1.3.9) 0.82 1
Lysobacter sp. OAE881 0.82 ABIE51_RS17260 RidA family protein 0.90 ABIE51_RS13410 N-acetylornithine carbamoyltransferase 0.89 34
Dyella japonica UNC79MFTsu3.2 0.79 ABZR86_RS11845 RidA family protein 0.82 ABZR86_RS08730 N-acetylornithine carbamoyltransferase low > 74
Rhodanobacter denitrificans FW104-10B01 0.79 LRK54_RS11800 RidA family protein 0.81 LRK54_RS02415 N-acetylornithine carbamoyltransferase 0.68 12
Rhodanobacter denitrificans MT42 0.79 LRK55_RS11525 RidA family protein 0.81 LRK55_RS02170 N-acetylornithine carbamoyltransferase low > 63
Rhodanobacter sp. FW510-T8 0.79 OKGIIK_12095 ridA reactive intermediate/imine deaminase 0.81 OKGIIK_09480 argF N-acetylornithine carbamoyltransferase low > 52
Pseudomonas stutzeri RCH2 0.64 Psest_3818 endoribonuclease L-PSP, putative 0.17 Psest_1291 ornithine carbamoyltransferase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.62 Psyr_0208 endoribonuclease L-PSP 0.16 Psyr_3901 ornithine carbamoyltransferase — —
Marinobacter adhaerens HP15 0.62 HP15_306 YjgF-like protein 0.19 HP15_3987 ornithine carbamoyltransferase low > 73
Pseudomonas syringae pv. syringae B728a 0.62 Psyr_0208 endoribonuclease L-PSP 0.16 Psyr_3901 ornithine carbamoyltransferase — —
Pseudomonas putida KT2440 0.61 PP_5303 aminoacrylate/iminopropionate hydrolase/deaminase 0.17 PP_1000 ornithine carbamoyltransferase, catabolic low > 96
Pseudomonas fluorescens SBW25 0.61 PFLU_RS29515 RidA family protein 0.17 PFLU_RS05680 ornithine carbamoyltransferase — —
Pseudomonas simiae WCS417 0.61 PS417_27835 endoribonuclease 0.16 PS417_22335 ornithine carbamoyltransferase low > 88
Pseudomonas fluorescens FW300-N2E2 0.61 Pf6N2E2_4360 Bona fide RidA/YjgF/TdcF/RutC subgroup 0.17 Pf6N2E2_5579 Ornithine carbamoyltransferase (EC 2.1.3.3) low > 103
Dechlorosoma suillum PS 0.61 Dsui_0312 endoribonuclease L-PSP, putative 0.18 Dsui_3249 ornithine carbamoyltransferase — —
Pseudomonas sp. RS175 0.61 PFR28_04425 2-iminobutanoate/2-iminopropanoate deaminase 0.17 PFR28_03363 Ornithine carbamoyltransferase 1, anabolic 0.61 6
Pseudomonas fluorescens SBW25-INTG 0.61 PFLU_RS29515 RidA family protein 0.17 PFLU_RS05680 ornithine carbamoyltransferase — —
Pseudomonas fluorescens FW300-N1B4 0.60 Pf1N1B4_2112 Bona fide RidA/YjgF/TdcF/RutC subgroup 0.16 Pf1N1B4_762 Ornithine carbamoyltransferase (EC 2.1.3.3) 0.68 39
Pseudomonas fluorescens FW300-N2C3 0.60 AO356_12475 reactive intermediate/imine deaminase 0.17 AO356_05275 ornithine carbamoyltransferase low > 104
Pseudomonas fluorescens GW456-L13 0.60 PfGW456L13_779 Bona fide RidA/YjgF/TdcF/RutC subgroup 0.17 PfGW456L13_1873 Ornithine carbamoyltransferase (EC 2.1.3.3) low > 87
Pseudomonas fluorescens FW300-N2E3 0.60 AO353_09285 reactive intermediate/imine deaminase 0.17 AO353_04155 ornithine carbamoyltransferase 0.47 73
Alteromonas macleodii MIT1002 0.58 MIT1002_00109 Putative reactive intermediate deaminase TdcF 0.17 MIT1002_00469 Ornithine carbamoyltransferase low > 70
Kangiella aquimarina DSM 16071 0.57 B158DRAFT_0573 endoribonuclease L-PSP, putative 0.70 B158DRAFT_1975 Ornithine carbamoyltransferase low > 40
Castellaniella sp019104865 MT123 0.57 ABCV34_RS03565 Rid family detoxifying hydrolase 0.19 ABCV34_RS05380 ornithine carbamoyltransferase — —
Shewanella amazonensis SB2B 0.57 Sama_0263 YjgF-like protein (RefSeq) 0.20 Sama_0258 ornithine carbamoyltransferase (RefSeq) 0.66 42
Acinetobacter radioresistens SK82 0.57 MPMX26_02797 2-iminobutanoate/2-iminopropanoate deaminase 0.19 MPMX26_01287 Ornithine carbamoyltransferase 1, anabolic low > 36
Pseudomonas sp. S08-1 0.57 OH686_13545 RidA/YER057c/UK114 superfamily protein 0.17 OH686_20405 ornithine carbamoyltransferase 0.83 12
Azospirillum brasilense Sp245 0.56 AZOBR_RS32435 dfrA 0.22 AZOBR_RS19030 ornithine carbamoyltransferase — —
Shewanella oneidensis MR-1 0.56 SO0358 endoribonuclease L-PSP, putative (NCBI ptt file) 0.21 SO0277 argF ornithine carbamoyltransferase (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.56 Shew_3500 putative endoribonuclease L-PSP (RefSeq) 0.18 Shew_0204 ornithine carbamoyltransferase (RefSeq) 0.74 21
Shewanella sp. ANA-3 0.56 Shewana3_3813 putative endoribonuclease L-PSP (RefSeq) 0.20 Shewana3_3903 ornithine carbamoyltransferase (RefSeq) low > 73
Desulfovibrio vulgaris Hildenborough JW710 0.53 DVU2647 endoribonuclease, L-PSP family (TIGR) 0.16 DVU1096 argF ornithine carbamoyltransferase (TIGR) low > 55
Vibrio cholerae E7946 ATCC 55056 0.52 CSW01_12735 RidA family protein 0.17 CSW01_12720 ornithine carbamoyltransferase low > 62
Dickeya dadantii 3937 0.51 DDA3937_RS01915 2-iminobutanoate/2-iminopropanoate deaminase 0.18 DDA3937_RS01940 ornithine carbamoyltransferase low > 74
Phocaeicola dorei CL03T12C01 0.51 ABI39_RS14715 RidA family protein 0.25 ABI39_RS02870 acetylornithine carbamoyltransferase low > 72
Phocaeicola vulgatus CL09T03C04 0.51 HMPREF1058_RS18400 RidA family protein 0.25 HMPREF1058_RS08640 acetylornithine carbamoyltransferase low > 67
Dickeya dianthicola ME23 0.51 DZA65_RS01960 2-iminobutanoate/2-iminopropanoate deaminase 0.18 DZA65_RS01985 ornithine carbamoyltransferase low > 75
Dickeya dianthicola 67-19 0.51 HGI48_RS01890 2-iminobutanoate/2-iminopropanoate deaminase 0.18 HGI48_RS01915 ornithine carbamoyltransferase — —
Escherichia coli ECRC100 0.50 OKFHMN_11875 ridA 2-iminobutanoate/2-iminopropanoate deaminase 0.19 OKFHMN_11835 argF ornithine carbamoyltransferase low > 80
Escherichia coli ECRC101 0.50 MCAODC_02380 ridA 2-iminobutanoate/2-iminopropanoate deaminase 0.19 MCAODC_02340 argF ornithine carbamoyltransferase low > 87
Escherichia coli ECOR27 0.50 NOLOHH_04135 ridA 2-iminobutanoate/2-iminopropanoate deaminase 0.19 NOLOHH_04090 argF ornithine carbamoyltransferase low > 75
Escherichia coli ECRC99 0.50 KEDOAH_16280 ridA 2-iminobutanoate/2-iminopropanoate deaminase 0.19 KEDOAH_16320 argF ornithine carbamoyltransferase — —
Escherichia coli ECOR38 0.50 HEPCGN_10070 ridA 2-iminobutanoate/2-iminopropanoate deaminase 0.19 HEPCGN_10025 argF ornithine carbamoyltransferase low > 87
Escherichia coli ECRC62 0.50 BNILDI_07375 ridA 2-iminobutanoate/2-iminopropanoate deaminase 0.19 BNILDI_07425 argF ornithine carbamoyltransferase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.50 OHPLBJKB_03791 2-iminobutanoate/2-iminopropanoate deaminase 0.19 OHPLBJKB_03782 Ornithine carbamoyltransferase subunit I 0.41 23
Escherichia coli ECRC98 0.50 JDDGAC_15515 ridA 2-iminobutanoate/2-iminopropanoate deaminase 0.19 JDDGAC_15475 argF ornithine carbamoyltransferase low > 86
Escherichia fergusonii Becca 0.50 EFB2_04290 2-iminobutanoate/2-iminopropanoate deaminase 0.19 EFB2_04281 Ornithine carbamoyltransferase subunit I low > 86
Escherichia coli BW25113 0.50 b4243 yjgF orf, hypothetical protein (VIMSS) 0.19 b4254 argI ornithine carbamoyltransferase 1 (NCBI) low > 76
Escherichia coli ECRC102 0.50 NIAGMN_09725 ridA 2-iminobutanoate/2-iminopropanoate deaminase 0.19 NIAGMN_09685 argF ornithine carbamoyltransferase — —
Escherichia coli Nissle 1917 0.50 ECOLIN_RS24615 2-iminobutanoate/2-iminopropanoate deaminase 0.19 ECOLIN_RS24665 ornithine carbamoyltransferase low > 55
Escherichia coli BL21 0.50 ECD_04111 enamine/imine deaminase, reaction intermediate detoxification 0.19 ECD_04120 ornithine carbamoyltransferase 1 low > 61
Pedobacter sp. GW460-11-11-14-LB5 0.49 CA265_RS22825 reactive intermediate/imine deaminase 0.26 CA265_RS18520 acetylornithine carbamoyltransferase 0.87 13
Klebsiella michiganensis M5al 0.49 BWI76_RS02985 reactive intermediate/imine deaminase 0.20 BWI76_RS03010 ornithine carbamoyltransferase 0.41 28
Paraburkholderia sabiae LMG 24235 0.49 QEN71_RS41190 RidA family protein 0.19 QEN71_RS02785 ornithine carbamoyltransferase — —
Pantoea sp. MT58 0.48 IAI47_16870 2-iminobutanoate/2-iminopropanoate deaminase 0.18 IAI47_16830 ornithine carbamoyltransferase 0.77 55
Rahnella sp. WP5 0.48 EX31_RS12775 2-iminobutanoate/2-iminopropanoate deaminase 0.18 EX31_RS12800 ornithine carbamoyltransferase low > 89
Enterobacter asburiae PDN3 0.47 EX28DRAFT_3444 reactive intermediate/imine deaminase 0.19 EX28DRAFT_3461 ornithine carbamoyltransferase low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.47 GFF928 Endoribonuclease L-PSP 0.18 GFF940 Ornithine carbamoyltransferase (EC 2.1.3.3) low > 78
Enterobacter sp. TBS_079 0.47 MPMX20_00542 2-iminobutanoate/2-iminopropanoate deaminase 0.19 MPMX20_00556 Ornithine carbamoyltransferase subunit F 0.33 60
Pectobacterium carotovorum WPP14 0.47 HER17_RS19520 2-iminobutanoate/2-iminopropanoate deaminase 0.18 HER17_RS19500 ornithine carbamoyltransferase low > 75
Parabacteroides merdae CL09T00C40 0.46 HMPREF1078_RS02020 RidA family protein 0.27 HMPREF1078_RS10660 acetylornithine carbamoyltransferase low > 61
Bacteroides ovatus ATCC 8483 0.44 BACOVA_00589 putative endoribonuclease L-PSP 0.27 BACOVA_03533 N-acetylornithine carbamoyltransferase 0.59 48
Erwinia tracheiphila SCR3 0.44 LU632_RS20960 ridA 2-iminobutanoate/2-iminopropanoate deaminase 0.18 LU632_RS20900 argF ornithine carbamoyltransferase 0.64 12
Bacteroides thetaiotaomicron VPI-5482 0.44 BT1336 putative translation initiation inhibitor (NCBI ptt file) 0.27 BT3717 N-succinylornithine carbamoyltransferase (EC 2.1.3.11) (from data) 0.52 59
Desulfovibrio vulgaris Miyazaki F 0.43 DvMF_1512 endoribonuclease L-PSP (RefSeq) 0.18 DvMF_0046 ornithine carbamoyltransferase (RefSeq) — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.43 ABZR88_RS17245 RidA family protein 0.26 ABZR88_RS15495 acetylornithine carbamoyltransferase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.43 Echvi_1327 endoribonuclease L-PSP, putative 0.28 Echvi_3849 N-succinylornithine carbamoyltransferase (EC 2.1.3.11) (from data) low > 79
Bacteroides stercoris CC31F 0.43 HMPREF1181_RS10885 RidA family protein 0.27 HMPREF1181_RS03315 N-acetylornithine carbamoyltransferase low > 56
Synechococcus elongatus PCC 7942 0.43 Synpcc7942_0972 YjgF-like protein 0.20 Synpcc7942_2514 argF ornithine carbamoyltransferase — —
Serratia liquefaciens MT49 0.42 IAI46_02265 2-iminobutanoate/2-iminopropanoate deaminase 0.16 IAI46_02320 ornithine carbamoyltransferase low > 86
Ralstonia solanacearum IBSBF1503 0.39 RALBFv3_RS20925 endoribonuclease L-PSP 0.17 RALBFv3_RS05185 ornithine carbamoyltransferase — —
Ralstonia solanacearum UW163 0.39 UW163_RS22060 endoribonuclease L-PSP 0.17 UW163_RS08440 ornithine carbamoyltransferase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.38 CA264_17590 RidA family protein 0.26 CA264_06240 acetylornithine carbamoyltransferase low > 74
Cupriavidus basilensis FW507-4G11 0.36 RR42_RS16710 endoribonuclease L-PSP 0.19 RR42_RS17175 ornithine carbamoyltransferase — —
Bifidobacterium breve UCC2003 0.35 BBR_RS12070 endoribonuclease L-PSP 0.20 BBR_RS13905 ornithine carbamoyltransferase low > 34
Paraburkholderia bryophila 376MFSha3.1 0.33 H281DRAFT_05869 2-iminobutanoate/2-iminopropanoate deaminase 0.20 H281DRAFT_04119 ornithine carbamoyltransferase low > 103
Variovorax sp. SCN45 0.33 GFF3442 RidA/YER057c/UK114 superfamily protein 0.19 GFF3926 Ornithine carbamoyltransferase (EC 2.1.3.3) — —
Sinorhizobium meliloti 1021 0.33 SM_b20377 translation initiation inhibitor protein 0.20 SMc02137 ornithine carbamoyltransferase low > 103
Variovorax sp. OAS795 0.32 ABID97_RS22895 RidA family protein 0.18 ABID97_RS08630 ornithine carbamoyltransferase — —
Dinoroseobacter shibae DFL-12 0.31 Dshi_0720 Endoribonuclease L-PSP (RefSeq) 0.21 Dshi_0796 ornithine carbamoyltransferase (RefSeq) low > 64
Agrobacterium fabrum C58 0.30 Atu3926 translation initiation inhibitor 0.23 Atu0429 ornithine carbamoyltransferase — —
Azospirillum sp. SherDot2 0.30 MPMX19_04018 2-aminomuconate deaminase 0.20 MPMX19_02178 Ornithine carbamoyltransferase, anabolic — —
Herbaspirillum seropedicae SmR1 0.28 HSERO_RS08735 hypothetical protein 0.17 HSERO_RS07185 Ornithine carbamoyltransferase (EC 2.1.3.3) (from data) — —
Paraburkholderia graminis OAS925 0.28 ABIE53_000758 reactive intermediate/imine deaminase 0.20 ABIE53_003354 ornithine carbamoyltransferase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.28 GFF3622 Bona fide RidA/YjgF/TdcF/RutC subgroup 0.18 GFF3419 Ornithine carbamoyltransferase (EC 2.1.3.3) — —
Rhizobium sp. OAE497 0.28 ABIE40_RS21405 RidA family protein 0.23 ABIE40_RS02325 ornithine carbamoyltransferase low > 107
Caulobacter crescentus NA1000 0.27 CCNA_02886 RutC-family pyrimidine utilization protein C 0.18 CCNA_02325 ornithine carbamoyltransferase — —
Caulobacter crescentus NA1000 Δfur 0.27 CCNA_02886 RutC-family pyrimidine utilization protein C 0.18 CCNA_02325 ornithine carbamoyltransferase low > 67
Ralstonia solanacearum GMI1000 0.26 RS_RS24425 RidA family protein 0.16 RS_RS12805 ornithine carbamoyltransferase — —
Ralstonia sp. UNC404CL21Col 0.25 ABZR87_RS17675 RidA family protein 0.17 ABZR87_RS00840 ornithine carbamoyltransferase — —
Ralstonia solanacearum PSI07 0.25 RPSI07_RS06815 RidA family protein 0.17 RPSI07_RS12115 ornithine carbamoyltransferase — —
Bosea sp. OAE506 0.22 ABIE41_RS17855 RidA family protein 0.20 ABIE41_RS04335 ornithine carbamoyltransferase — —

Not shown: 1 genomes with orthologs for Xcc-8004.1205.1 only; 11 genomes with orthologs for Xcc-8004.2316.1 only