Conservation of cofitness between Xcc-8004.1885.1 and Xcc-8004.1883.1 in Xanthomonas campestris pv. campestris strain 8004

86 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.1885.1 TldE protein, part of TldE/TldD proteolytic complex 1.0 Xcc-8004.1883.1 TldD protein, part of TldE/TldD proteolytic complex 0.76 1
Lysobacter sp. OAE881 0.71 ABIE51_RS06805 metalloprotease PmbA 0.81 ABIE51_RS06795 metalloprotease TldD 0.62 1
Rhodanobacter denitrificans MT42 0.60 LRK55_RS03125 metalloprotease PmbA 0.69 LRK55_RS03145 metalloprotease TldD 0.69 62
Rhodanobacter denitrificans FW104-10B01 0.60 LRK54_RS03375 metalloprotease PmbA 0.69 LRK54_RS03395 metalloprotease TldD 0.96 1
Rhodanobacter sp. FW510-T8 0.60 OKGIIK_10260 pmbA metalloprotease PmbA 0.71 OKGIIK_10280 tldD metalloprotease TldD 0.68 51
Dyella japonica UNC79MFTsu3.2 0.59 ABZR86_RS21700 metalloprotease PmbA 0.71 ABZR86_RS21715 metalloprotease TldD 0.53 27
Pseudomonas putida KT2440 0.47 PP_0942 regulatory protease 0.64 PP_0940 putative protease involved in Microcin B17 maturation and in sensitivity to the DNA gyrase inhibitor LetD 0.57 1
Pseudomonas sp. S08-1 0.47 OH686_08570 TldE protein, part of TldE/TldD proteolytic complex 0.61 OH686_08580 TldD protein, part of TldE/TldD proteolytic complex 0.63 71
Pseudomonas sp. RS175 0.47 PFR28_00163 Metalloprotease PmbA 0.61 PFR28_00161 Metalloprotease TldD 0.68 1
Pseudomonas fluorescens SBW25-INTG 0.47 PFLU_RS04350 metalloprotease PmbA 0.62 PFLU_RS04340 metalloprotease TldD 0.69 1
Pseudomonas fluorescens FW300-N2E2 0.47 Pf6N2E2_3278 TldE protein, part of TldE/TldD proteolytic complex 0.61 Pf6N2E2_3280 TldD protein, part of TldE/TldD proteolytic complex 0.71 1
Pseudomonas fluorescens SBW25 0.47 PFLU_RS04350 metalloprotease PmbA 0.62 PFLU_RS04340 metalloprotease TldD low > 109
Rahnella sp. WP5 0.47 EX31_RS12320 metalloprotease PmbA 0.58 EX31_RS12265 metalloprotease TldD 0.30 75
Pseudomonas fluorescens FW300-N2C3 0.47 AO356_07085 peptidase PmbA 0.61 AO356_07095 protease TldD 0.75 1
Pseudomonas simiae WCS417 0.47 PS417_04295 peptidase PmbA 0.62 PS417_04285 protease TldD 0.64 1
Pseudomonas syringae pv. syringae B728a 0.46 Psyr_4154 microcin-processing peptidase 1, Unknown type peptidase, MEROPS family U62 0.63 Psyr_4156 microcin-processing peptidase 2, Unknown type peptidase, MEROPS family U62 0.38 12
Pseudomonas syringae pv. syringae B728a ΔmexB 0.46 Psyr_4154 microcin-processing peptidase 1, Unknown type peptidase, MEROPS family U62 0.63 Psyr_4156 microcin-processing peptidase 2, Unknown type peptidase, MEROPS family U62 0.36 15
Pseudomonas fluorescens FW300-N1B4 0.46 Pf1N1B4_1090 TldE protein, part of TldE/TldD proteolytic complex 0.61 Pf1N1B4_1092 TldD protein, part of TldE/TldD proteolytic complex 0.39 6
Pseudomonas fluorescens GW456-L13 0.46 PfGW456L13_5024 TldE protein, part of TldE/TldD proteolytic complex 0.61 PfGW456L13_5026 TldD protein, part of TldE/TldD proteolytic complex low > 87
Pseudomonas fluorescens FW300-N2E3 0.46 AO353_05205 peptidase PmbA 0.61 AO353_05215 protease TldD 0.83 1
Variovorax sp. SCN45 0.46 GFF4697 TldE protein, part of TldE/TldD proteolytic complex 0.60 GFF4449 TldD protein, part of TldE/TldD proteolytic complex 0.83 34
Pseudomonas stutzeri RCH2 0.46 Psest_3318 Predicted Zn-dependent proteases and their inactivated homologs 0.62 Psest_3320 Predicted Zn-dependent proteases and their inactivated homologs 0.46 15
Pectobacterium carotovorum WPP14 0.46 HER17_RS20090 metalloprotease PmbA 0.59 HER17_RS20140 metalloprotease TldD low > 75
Alteromonas macleodii MIT1002 0.45 MIT1002_00230 peptidase PmbA 0.64 MIT1002_00227 protease TldD 0.80 1
Shewanella sp. ANA-3 0.45 Shewana3_3631 microcin-processing peptidase 1 (RefSeq) 0.61 Shewana3_3641 microcin-processing peptidase 2 (RefSeq) 0.56 1
Serratia liquefaciens MT49 0.45 IAI46_22575 metalloprotease PmbA 0.60 IAI46_22685 metalloprotease TldD 0.55 28
Shewanella oneidensis MR-1 0.45 SO4078 pmbA pmba protein (NCBI ptt file) 0.59 SO4091 tldD tldD protein (NCBI ptt file) 0.65 1
Variovorax sp. OAS795 0.45 ABID97_RS20695 metalloprotease PmbA 0.59 ABID97_RS06335 metalloprotease TldD 0.93 1
Escherichia coli Nissle 1917 0.45 ECOLIN_RS24570 metalloprotease PmbA 0.60 ECOLIN_RS18595 metalloprotease TldD 0.47 11
Escherichia coli BL21 0.45 ECD_04103 putative antibiotic peptide MccB17 maturation peptidase 0.60 ECD_03104 putative peptidase 0.74 3
Escherichia coli ECRC100 0.45 OKFHMN_11925 pmbA metalloprotease PmbA 0.60 OKFHMN_17755 tldD metalloprotease TldD 0.96 2
Escherichia coli ECRC98 0.45 JDDGAC_15565 pmbA metalloprotease PmbA 0.60 JDDGAC_21380 tldD metalloprotease TldD low > 86
Escherichia coli ECRC102 0.45 NIAGMN_09775 pmbA metalloprotease PmbA 0.60 NIAGMN_15515 tldD metalloprotease TldD — —
Escherichia coli BW25113 0.45 b4235 pmbA predicted peptidase required for the maturation and secretion of the antibiotic peptide MccB17 (NCBI) 0.60 b3244 tldD predicted peptidase (NCBI) 0.75 1
Escherichia coli ECRC101 0.45 MCAODC_02430 pmbA metalloprotease PmbA 0.60 MCAODC_08275 tldD metalloprotease TldD low > 87
Escherichia coli ECOR27 0.45 NOLOHH_04185 pmbA metalloprotease PmbA 0.60 NOLOHH_09555 tldD metalloprotease TldD low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.45 OHPLBJKB_03800 Metalloprotease PmbA 0.60 OHPLBJKB_00460 Metalloprotease TldD low > 73
Escherichia coli ECRC62 0.45 BNILDI_07325 pmbA metalloprotease PmbA 0.60 BNILDI_01980 tldD metalloprotease TldD low > 75
Escherichia coli ECOR38 0.45 HEPCGN_10125 pmbA metalloprotease PmbA 0.60 HEPCGN_16620 tldD metalloprotease TldD low > 87
Escherichia coli ECRC99 0.45 KEDOAH_16230 pmbA metalloprotease PmbA 0.60 KEDOAH_10395 tldD metalloprotease TldD — —
Escherichia fergusonii Becca 0.45 EFB2_04298 Metalloprotease PmbA 0.60 EFB2_00586 Metalloprotease TldD low > 86
Klebsiella michiganensis M5al 0.44 BWI76_RS02850 metalloprotease PmbA 0.60 BWI76_RS25470 metalloprotease TldD low > 92
Enterobacter asburiae PDN3 0.44 EX28DRAFT_3422 Predicted Zn-dependent proteases and their inactivated homologs 0.59 EX28DRAFT_3295 Predicted Zn-dependent proteases and their inactivated homologs low > 76
Vibrio cholerae E7946 ATCC 55056 0.44 CSW01_12845 metalloprotease PmbA 0.57 CSW01_02220 metalloprotease TldD 0.89 2
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.44 GFF904 TldE protein, part of TldE/TldD proteolytic complex 0.60 GFF2140 TldD protein, part of TldE/TldD proteolytic complex 0.53 1
Pantoea sp. MT58 0.44 IAI47_02765 metalloprotease PmbA 0.61 IAI47_02465 metalloprotease TldD 0.93 1
Enterobacter sp. TBS_079 0.44 MPMX20_00517 Metalloprotease PmbA 0.59 MPMX20_04151 Metalloprotease TldD 0.31 10
Ralstonia solanacearum UW163 0.44 UW163_RS15845 metalloprotease PmbA 0.63 UW163_RS08170 metalloprotease TldD — —
Ralstonia solanacearum IBSBF1503 0.44 RALBFv3_RS13965 metalloprotease PmbA 0.63 RALBFv3_RS05455 metalloprotease TldD 0.80 1
Shewanella amazonensis SB2B 0.44 Sama_0482 PmbA protein (RefSeq) 0.59 Sama_0474 TldD protein (RefSeq) 0.89 1
Herbaspirillum seropedicae SmR1 0.43 HSERO_RS09265 peptidase C69 0.62 HSERO_RS07155 peptidase C69 0.46 2
Ralstonia solanacearum PSI07 0.43 RPSI07_RS19505 metalloprotease PmbA 0.62 RPSI07_RS11850 metalloprotease TldD low > 81
Castellaniella sp019104865 MT123 0.43 ABCV34_RS10610 metalloprotease PmbA 0.58 ABCV34_RS02590 metalloprotease TldD low > 48
Shewanella loihica PV-4 0.43 Shew_0416 peptidase U62, modulator of DNA gyrase (RefSeq) 0.60 Shew_0410 peptidase U62, modulator of DNA gyrase (RefSeq) 0.65 4
Dickeya dadantii 3937 0.43 DDA3937_RS01500 metalloprotease PmbA 0.60 DDA3937_RS01460 metalloprotease TldD 0.91 1
Ralstonia sp. UNC404CL21Col 0.43 ABZR87_RS09660 metalloprotease PmbA 0.62 ABZR87_RS01105 metalloprotease TldD 0.78 1
Dechlorosoma suillum PS 0.43 Dsui_1234 putative Zn-dependent protease-like protein 0.62 Dsui_3401 putative Zn-dependent protease-like protein 0.84 6
Dickeya dianthicola ME23 0.43 DZA65_RS01480 metalloprotease PmbA 0.60 DZA65_RS01440 metalloprotease TldD low > 75
Dickeya dianthicola 67-19 0.43 HGI48_RS01415 metalloprotease PmbA 0.60 HGI48_RS01380 metalloprotease TldD low > 71
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS14750 peptidase PMbA 0.63 RR42_RS05875 protease TldD 0.67 1
Ralstonia solanacearum GMI1000 0.42 RS_RS04700 metalloprotease PmbA 0.63 RS_RS13315 metalloprotease TldD 0.58 30
Acidovorax sp. GW101-3H11 0.42 Ac3H11_3262 TldE protein, part of TldE/TldD proteolytic complex 0.61 Ac3H11_4036 TldD protein, part of TldE/TldD proteolytic complex 0.36 4
Paraburkholderia graminis OAS925 0.42 ABIE53_003116 PmbA protein 0.60 ABIE53_000851 TldD protein 0.68 1
Paraburkholderia bryophila 376MFSha3.1 0.41 H281DRAFT_04304 microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62 0.60 H281DRAFT_04688 microcin-processing peptidase 2. Unknown type peptidase. MEROPS family U62 0.51 1
Erwinia tracheiphila SCR3 0.41 LU632_RS02145 pmbA metalloprotease PmbA 0.59 LU632_RS21420 tldD metalloprotease TldD 0.75 14
Burkholderia phytofirmans PsJN 0.41 BPHYT_RS14705 peptidase C69 0.60 BPHYT_RS03540 peptidase C69 0.27 4
Hydrogenophaga sp. GW460-11-11-14-LB1 0.41 GFF3655 TldE protein, part of TldE/TldD proteolytic complex 0.61 GFF580 TldD protein, part of TldE/TldD proteolytic complex 0.93 1
Paraburkholderia sabiae LMG 24235 0.41 QEN71_RS04270 metalloprotease PmbA 0.61 QEN71_RS26555 metalloprotease TldD 0.87 1
Kangiella aquimarina DSM 16071 0.40 B158DRAFT_2075 microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62 0.58 B158DRAFT_2072 microcin-processing peptidase 2. Unknown type peptidase. MEROPS family U62 0.48 15
Rhodopseudomonas palustris CGA009 0.32 TX73_005930 TldD/PmbA family protein 0.51 TX73_004255 metalloprotease TldD 0.71 1
Azospirillum brasilense Sp245 0.32 AZOBR_RS11930 modulator protein 0.53 AZOBR_RS10600 peptidase C69 0.79 1
Azospirillum sp. SherDot2 0.31 MPMX19_01886 Metalloprotease PmbA 0.53 MPMX19_00882 Metalloprotease TldD 0.54 18
Sphingomonas koreensis DSMZ 15582 0.29 Ga0059261_0810 Predicted Zn-dependent proteases and their inactivated homologs 0.53 Ga0059261_2252 Predicted Zn-dependent proteases and their inactivated homologs low > 68
Rhodospirillum rubrum S1H 0.29 Rru_A0575 Peptidase U62, modulator of DNA gyrase (NCBI) 0.52 Rru_A0567 Peptidase U62, modulator of DNA gyrase (NCBI) 0.64 10
Magnetospirillum magneticum AMB-1 0.28 AMB_RS22120 TldD/PmbA family protein 0.53 AMB_RS21030 metalloprotease TldD low > 64
Phaeobacter inhibens DSM 17395 0.28 PGA1_c33480 protein PmbA 0.50 PGA1_c06240 protein TldD — —
Sinorhizobium meliloti 1021 0.26 SMc00897 PMBA protein 0.51 SMc00960 hypothetical protein 0.49 1
Caulobacter crescentus NA1000 Δfur 0.26 CCNA_00311 Zn-dependent protease family protein 0.51 CCNA_03522 Zn-dependent protease TldD low > 67
Caulobacter crescentus NA1000 0.26 CCNA_00311 Zn-dependent protease family protein 0.51 CCNA_03522 Zn-dependent protease TldD 0.92 1
Dinoroseobacter shibae DFL-12 0.26 Dshi_0064 peptidase U62 modulator of DNA gyrase (RefSeq) 0.50 Dshi_1139 peptidase U62 modulator of DNA gyrase (RefSeq) low > 64
Rhizobium sp. OAE497 0.25 ABIE40_RS03780 TldD/PmbA family protein 0.52 ABIE40_RS04050 metalloprotease TldD 0.95 4
Agrobacterium fabrum C58 0.25 Atu0693 PmbA/TldD related protein 0.51 Atu0765 TldD 0.28 7
Brevundimonas sp. GW460-12-10-14-LB2 0.24 A4249_RS09195 TldD/PmbA family protein 0.49 A4249_RS10860 metalloprotease TldD low > 48
Bacteroides thetaiotaomicron VPI-5482 0.19 BT3649 putative modulator of DNA gyrase (NCBI ptt file) 0.38 BT3648 putative modulator of DNA gyrase (NCBI ptt file) low > 81
Bacteroides stercoris CC31F 0.19 HMPREF1181_RS03170 TldD/PmbA family protein 0.36 HMPREF1181_RS03165 TldD/PmbA family protein low > 56
Parabacteroides merdae CL09T00C40 0.17 HMPREF1078_RS03625 TldD/PmbA family protein 0.37 HMPREF1078_RS03620 TldD/PmbA family protein 0.84 1
Synechococcus elongatus PCC 7942 0.08 Synpcc7942_1289 pmbA putative modulator of DNA gyrase 0.21 Synpcc7942_1127 tldD microcin-processing peptidase 2. Unknown type peptidase. MEROPS family U62 0.97 1

Not shown: 0 genomes with orthologs for Xcc-8004.1885.1 only; 2 genomes with orthologs for Xcc-8004.1883.1 only