Conservation of cofitness between SMc00554 and SMc04405 in Sinorhizobium meliloti 1021

87 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Sinorhizobium meliloti 1021 1.0 SMc00554 amidophosphoribosyltransferase 1.0 SMc04405 3-isopropylmalate dehydrogenase 0.95 18
Agrobacterium fabrum C58 0.86 Atu1075 amidophosphoribosyltransferase 0.90 Atu2791 3-isopropylmalate dehydrogenase 0.93 9
Rhizobium sp. OAE497 0.84 ABIE40_RS06270 amidophosphoribosyltransferase 0.93 ABIE40_RS19050 3-isopropylmalate dehydrogenase 0.90 16
Bosea sp. OAE506 0.67 ABIE41_RS17810 amidophosphoribosyltransferase 0.70 ABIE41_RS11860 3-isopropylmalate dehydrogenase — —
Rhodopseudomonas palustris CGA009 0.64 TX73_015990 amidophosphoribosyltransferase 0.72 TX73_001175 3-isopropylmalate dehydrogenase — —
Caulobacter crescentus NA1000 Δfur 0.63 CCNA_01730 amidophosphoribosyltransferase 0.56 CCNA_00193 3-isopropylmalate dehydrogenase low > 67
Caulobacter crescentus NA1000 0.63 CCNA_01730 amidophosphoribosyltransferase 0.56 CCNA_00193 3-isopropylmalate dehydrogenase 0.72 44
Azospirillum brasilense Sp245 0.57 AZOBR_RS08310 amidophosphoribosyltransferase 0.62 AZOBR_RS14130 3-isopropylmalate dehydrogenase 0.68 11
Azospirillum sp. SherDot2 0.56 MPMX19_00906 Amidophosphoribosyltransferase 0.64 MPMX19_00607 3-isopropylmalate dehydrogenase 0.87 24
Rhodospirillum rubrum S1H 0.56 Rru_A0404 Amidophosphoribosyl transferase (NCBI) 0.58 Rru_A1191 3-isopropylmalate dehydrogenase (NCBI) low > 58
Magnetospirillum magneticum AMB-1 0.56 AMB_RS10545 amidophosphoribosyltransferase 0.56 AMB_RS20570 3-isopropylmalate dehydrogenase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.56 A4249_RS03735 amidophosphoribosyltransferase 0.40 A4249_RS09995 3-isopropylmalate dehydrogenase — —
Sphingomonas koreensis DSMZ 15582 0.55 Ga0059261_3626 amidophosphoribosyltransferase (EC 2.4.2.14) 0.43 Ga0059261_3190 3-isopropylmalate dehydrogenase — —
Dinoroseobacter shibae DFL-12 0.51 Dshi_2132 amidophosphoribosyltransferase (RefSeq) 0.61 Dshi_0081 3-isopropylmalate dehydrogenase (RefSeq) — —
Phaeobacter inhibens DSM 17395 0.51 PGA1_c10810 amidophosphoribosyltransferase PurF 0.59 PGA1_c29830 3-isopropylmalate dehydrogenase LeuB 0.90 7
Desulfovibrio vulgaris Miyazaki F 0.43 DvMF_2307 amidophosphoribosyltransferase (RefSeq) 0.47 DvMF_1794 3-isopropylmalate dehydrogenase (RefSeq) 0.78 23
Desulfovibrio vulgaris Hildenborough JW710 0.42 DVU0161 purF amidophosphoribosyltransferase (TIGR) 0.44 DVU2985 leuB 3-isopropylmalate dehydrogenase (TIGR) — —
Synechococcus elongatus PCC 7942 0.36 Synpcc7942_0004 purF amidophosphoribosyltransferase 0.46 Synpcc7942_1505 leuB 3-isopropylmalate dehydrogenase — —
Dickeya dadantii 3937 0.30 DDA3937_RS14435 amidophosphoribosyltransferase 0.41 DDA3937_RS18120 3-isopropylmalate dehydrogenase 0.67 37
Shewanella amazonensis SB2B 0.30 Sama_2146 amidophosphoribosyltransferase (RefSeq) 0.39 Sama_0336 3-isopropylmalate dehydrogenase (RefSeq) 0.76 56
Shewanella loihica PV-4 0.30 Shew_2302 amidophosphoribosyltransferase (RefSeq) 0.38 Shew_3471 3-isopropylmalate dehydrogenase (RefSeq) 0.81 29
Pectobacterium carotovorum WPP14 0.29 HER17_RS07020 amidophosphoribosyltransferase 0.42 HER17_RS03080 3-isopropylmalate dehydrogenase 0.96 10
Dickeya dianthicola 67-19 0.29 HGI48_RS14405 amidophosphoribosyltransferase 0.41 HGI48_RS18060 3-isopropylmalate dehydrogenase 0.80 10
Dickeya dianthicola ME23 0.29 DZA65_RS15335 amidophosphoribosyltransferase 0.42 DZA65_RS19205 3-isopropylmalate dehydrogenase 0.58 67
Escherichia coli ECRC101 0.29 OKFHMN_22715 purF amidophosphoribosyltransferase 0.42 OKFHMN_10720 leuB 3-isopropylmalate dehydrogenase — —
Escherichia coli Nissle 1917 0.29 ECOLIN_RS13405 amidophosphoribosyltransferase 0.42 ECOLIN_RS00395 3-isopropylmalate dehydrogenase — —
Escherichia coli ECRC101 0.29 MCAODC_13755 purF amidophosphoribosyltransferase 0.42 MCAODC_01235 leuB 3-isopropylmalate dehydrogenase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.29 OHPLBJKB_01393 Amidophosphoribosyltransferase 0.42 OHPLBJKB_03584 3-isopropylmalate dehydrogenase low > 73
Klebsiella michiganensis M5al 0.29 BWI76_RS20350 amidophosphoribosyltransferase 0.43 BWI76_RS04675 3-isopropylmalate dehydrogenase 0.79 39
Escherichia fergusonii Becca 0.29 EFB2_01546 Amidophosphoribosyltransferase 0.42 EFB2_03972 3-isopropylmalate dehydrogenase low > 86
Escherichia coli ECRC98 0.29 JDDGAC_26675 purF amidophosphoribosyltransferase 0.42 JDDGAC_14315 leuB 3-isopropylmalate dehydrogenase — —
Escherichia coli ECOR38 0.29 HEPCGN_21910 purF amidophosphoribosyltransferase 0.42 HEPCGN_08700 leuB 3-isopropylmalate dehydrogenase low > 85
Escherichia coli ECRC99 0.29 KEDOAH_05480 purF amidophosphoribosyltransferase 0.42 KEDOAH_17435 leuB 3-isopropylmalate dehydrogenase — —
Escherichia coli ECRC102 0.29 NIAGMN_20485 purF amidophosphoribosyltransferase 0.42 NIAGMN_08570 leuB 3-isopropylmalate dehydrogenase — —
Pantoea sp. MT58 0.29 IAI47_06275 amidophosphoribosyltransferase 0.42 IAI47_16005 3-isopropylmalate dehydrogenase 0.78 34
Escherichia coli ECOR27 0.29 NOLOHH_14335 purF amidophosphoribosyltransferase 0.42 NOLOHH_03065 leuA 2-isopropylmalate synthase low > 57
Escherichia coli BW25113 0.29 b2312 purF amidophosphoribosyltransferase (NCBI) 0.42 b0073 leuB 3-isopropylmalate dehydrogenase (VIMSS) 0.76 49
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.29 GFF1927 Amidophosphoribosyltransferase (EC 2.4.2.14) 0.43 GFF165 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 78
Escherichia coli BL21 0.29 ECD_02237 amidophosphoribosyltransferase 0.42 ECD_00075 3-isopropylmalate dehydrogenase, NAD(+)-dependent low > 60
Enterobacter sp. TBS_079 0.29 MPMX20_03247 Amidophosphoribosyltransferase 0.43 MPMX20_00768 3-isopropylmalate dehydrogenase 0.80 55
Erwinia tracheiphila SCR3 0.29 LU632_RS07865 purF amidophosphoribosyltransferase 0.41 LU632_RS02875 leuB 3-isopropylmalate dehydrogenase 0.66 42
Serratia liquefaciens MT49 0.29 IAI46_17810 amidophosphoribosyltransferase 0.44 IAI46_03350 3-isopropylmalate dehydrogenase low > 86
Escherichia coli ECRC62 0.29 BNILDI_13255 purF amidophosphoribosyltransferase 0.42 BNILDI_08545 leuA 2-isopropylmalate synthase — —
Enterobacter asburiae PDN3 0.29 EX28DRAFT_0292 amidophosphoribosyltransferase (EC 2.4.2.14) 0.43 EX28DRAFT_3669 3-isopropylmalate dehydrogenase low > 76
Shewanella oneidensis MR-1 0.29 SO3064 purF amidophosphoribosyltransferase (NCBI ptt file) 0.39 SO4235 leuB 3-isopropylmalate dehydrogenase (NCBI ptt file) 0.84 41
Shewanella sp. ANA-3 0.29 Shewana3_1483 amidophosphoribosyltransferase (RefSeq) 0.39 Shewana3_3760 3-isopropylmalate dehydrogenase (RefSeq) 0.85 42
Rahnella sp. WP5 0.28 EX31_RS19570 amidophosphoribosyltransferase 0.42 EX31_RS03685 3-isopropylmalate dehydrogenase 0.93 18
Alteromonas macleodii MIT1002 0.28 MIT1002_02524 Amidophosphoribosyltransferase 0.39 MIT1002_00948 3-isopropylmalate dehydrogenase 0.99 7
Vibrio cholerae E7946 ATCC 55056 0.28 CSW01_05115 amidophosphoribosyltransferase 0.42 CSW01_12600 3-isopropylmalate dehydrogenase low > 62
Ralstonia solanacearum PSI07 0.28 RPSI07_RS14765 amidophosphoribosyltransferase 0.49 RPSI07_RS14705 3-isopropylmalate dehydrogenase — —
Dechlorosoma suillum PS 0.28 Dsui_3186 amidophosphoribosyltransferase 0.52 Dsui_3198 3-isopropylmalate dehydrogenase — —
Rhodanobacter denitrificans FW104-10B01 0.28 LRK54_RS01340 amidophosphoribosyltransferase 0.38 LRK54_RS10325 3-isopropylmalate dehydrogenase 0.73 11
Paraburkholderia graminis OAS925 0.28 ABIE53_004816 amidophosphoribosyltransferase 0.48 ABIE53_004804 3-isopropylmalate dehydrogenase — —
Rhodanobacter denitrificans MT42 0.28 LRK55_RS01105 amidophosphoribosyltransferase 0.39 LRK55_RS09965 3-isopropylmalate dehydrogenase low > 63
Paraburkholderia bryophila 376MFSha3.1 0.28 H281DRAFT_06060 amidophosphoribosyltransferase 0.48 H281DRAFT_06072 3-isopropylmalate dehydrogenase 0.37 53
Acidovorax sp. GW101-3H11 0.28 Ac3H11_2608 Amidophosphoribosyltransferase (EC 2.4.2.14) 0.49 Ac3H11_1528 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.76 26
Burkholderia phytofirmans PsJN 0.28 BPHYT_RS33840 amidophosphoribosyltransferase 0.48 BPHYT_RS33900 3-isopropylmalate dehydrogenase 0.86 11
Dyella japonica UNC79MFTsu3.2 0.28 ABZR86_RS06775 amidophosphoribosyltransferase 0.36 ABZR86_RS15950 3-isopropylmalate dehydrogenase 0.94 33
Ralstonia solanacearum UW163 0.28 UW163_RS11175 amidophosphoribosyltransferase 0.50 UW163_RS11115 3-isopropylmalate dehydrogenase — —
Ralstonia solanacearum IBSBF1503 0.28 RALBFv3_RS02550 amidophosphoribosyltransferase 0.50 RALBFv3_RS02610 3-isopropylmalate dehydrogenase — —
Ralstonia solanacearum GMI1000 0.27 RS_RS09930 amidophosphoribosyltransferase 0.50 RS_RS09990 3-isopropylmalate dehydrogenase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.27 GFF300 Amidophosphoribosyltransferase (EC 2.4.2.14) 0.49 GFF3360 3-isopropylmalate dehydrogenase (EC 1.1.1.85) — —
Kangiella aquimarina DSM 16071 0.27 B158DRAFT_1488 amidophosphoribosyltransferase (EC 2.4.2.14) 0.52 B158DRAFT_1322 3-isopropylmalate dehydrogenase (EC 1.1.1.85) — —
Lysobacter sp. OAE881 0.27 ABIE51_RS06180 amidophosphoribosyltransferase 0.40 ABIE51_RS17585 3-isopropylmalate dehydrogenase low > 62
Herbaspirillum seropedicae SmR1 0.27 HSERO_RS16445 amidophosphoribosyltransferase 0.49 HSERO_RS16500 3-isopropylmalate dehydrogenase — —
Variovorax sp. SCN45 0.27 GFF3089 Amidophosphoribosyltransferase (EC 2.4.2.14) 0.50 GFF3888 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 127
Variovorax sp. OAS795 0.27 ABID97_RS21635 amidophosphoribosyltransferase 0.50 ABID97_RS08455 3-isopropylmalate dehydrogenase — —
Paraburkholderia sabiae LMG 24235 0.27 QEN71_RS17680 amidophosphoribosyltransferase 0.48 QEN71_RS17620 3-isopropylmalate dehydrogenase 0.57 128
Pseudomonas sp. S08-1 0.27 OH686_04420 amidophosphoribosyltransferase 0.54 OH686_04470 3-isopropylmalate dehydrogenase — —
Rhodanobacter sp. FW510-T8 0.27 OKGIIK_05570 purF amidophosphoribosyltransferase 0.39 OKGIIK_13595 leuB 3-isopropylmalate dehydrogenase low > 52
Pseudomonas fluorescens SBW25-INTG 0.27 PFLU_RS20515 amidophosphoribosyltransferase 0.58 PFLU_RS20565 3-isopropylmalate dehydrogenase 0.65 2
Pseudomonas fluorescens SBW25 0.27 PFLU_RS20515 amidophosphoribosyltransferase 0.58 PFLU_RS20565 3-isopropylmalate dehydrogenase low > 109
Xanthomonas campestris pv. campestris strain 8004 0.27 Xcc-8004.4073.1 Amidophosphoribosyltransferase (EC 2.4.2.14) 0.52 Xcc-8004.1053.1 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.71 36
Pseudomonas simiae WCS417 0.27 PS417_18535 amidophosphoribosyltransferase 0.57 PS417_18585 3-isopropylmalate dehydrogenase — —
Pseudomonas sp. RS175 0.27 PFR28_02811 Amidophosphoribosyltransferase 0.56 PFR28_02821 3-isopropylmalate dehydrogenase 0.76 4
Pseudomonas syringae pv. syringae B728a 0.27 Psyr_1668 amidophosphoribosyltransferase 0.55 Psyr_1985 3-isopropylmalate dehydrogenase 0.85 5
Pseudomonas fluorescens FW300-N2C3 0.27 AO356_21465 amidophosphoribosyltransferase 0.57 AO356_21415 3-isopropylmalate dehydrogenase 0.79 21
Pseudomonas stutzeri RCH2 0.27 Psest_2579 amidophosphoribosyltransferase 0.55 Psest_2589 3-isopropylmalate dehydrogenase 0.65 18
Pseudomonas syringae pv. syringae B728a ΔmexB 0.27 Psyr_1668 amidophosphoribosyltransferase 0.55 Psyr_1985 3-isopropylmalate dehydrogenase 0.88 5
Pseudomonas fluorescens FW300-N2E3 0.27 AO353_20690 amidophosphoribosyltransferase 0.56 AO353_20635 3-isopropylmalate dehydrogenase — —
Pseudomonas fluorescens GW456-L13 0.27 PfGW456L13_3935 Amidophosphoribosyltransferase (EC 2.4.2.14) 0.55 PfGW456L13_3945 3-isopropylmalate dehydrogenase (EC 1.1.1.85) — —
Pseudomonas putida KT2440 0.27 PP_2000 amidophosphoribosyl transferase 0.56 PP_1988 3-isopropylmalate dehydrogenase 0.32 32
Cupriavidus basilensis FW507-4G11 0.27 RR42_RS14325 amidophosphoribosyltransferase 0.49 RR42_RS14385 3-isopropylmalate dehydrogenase — —
Pseudomonas fluorescens FW300-N2E2 0.27 Pf6N2E2_76 Amidophosphoribosyltransferase (EC 2.4.2.14) 0.57 Pf6N2E2_66 3-isopropylmalate dehydrogenase (EC 1.1.1.85) — —
Marinobacter adhaerens HP15 0.27 HP15_1821 amidophosphoribosyltransferase 0.54 HP15_1832 3-isopropylmalate dehydrogenase — —
Ralstonia sp. UNC404CL21Col 0.26 ABZR87_RS14465 amidophosphoribosyltransferase 0.50 ABZR87_RS14530 3-isopropylmalate dehydrogenase — —
Castellaniella sp019104865 MT123 0.26 ABCV34_RS04130 amidophosphoribosyltransferase 0.46 ABCV34_RS04280 3-isopropylmalate dehydrogenase — —
Acinetobacter radioresistens SK82 0.25 MPMX26_01122 Amidophosphoribosyltransferase 0.54 MPMX26_00348 3-isopropylmalate dehydrogenase 0.84 28

Not shown: 5 genomes with orthologs for SMc00554 only; 11 genomes with orthologs for SMc04405 only