| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas putida KT2440 | 1.0 | PP_4002 | | DNA-dependent ATPase required for recombination | 1.0 | PP_5352 | | DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex | 0.25 | 10 |
| Pseudomonas fluorescens FW300-N2E3 | 0.93 | AO353_27640 | | recombination factor protein RarA | 0.88 | AO353_10055 | | DNA helicase II | 0.33 | 6 |
| Pseudomonas fluorescens FW300-N1B4 | 0.92 | Pf1N1B4_4062 | | FIG065221: Holliday junction DNA helicase | 0.86 | Pf1N1B4_2005 | | ATP-dependent DNA helicase UvrD/PcrA | 0.31 | 5 |
| Pseudomonas sp. RS175 | 0.92 | PFR28_02606 | | Replication-associated recombination protein A | 0.87 | PFR28_04523 | | DNA helicase II | 0.28 | 3 |
| Pseudomonas fluorescens FW300-N2C3 | 0.92 | AO356_22185 | | recombination factor protein RarA | 0.87 | AO356_11990 | | DNA helicase II | 0.45 | 11 |
| Pseudomonas fluorescens FW300-N2E2 | 0.91 | Pf6N2E2_299 | | FIG065221: Holliday junction DNA helicase | 0.87 | Pf6N2E2_4273 | | ATP-dependent DNA helicase UvrD/PcrA | 0.33 | 10 |
| Pseudomonas fluorescens GW456-L13 | 0.91 | PfGW456L13_2653 | | FIG065221: Holliday junction DNA helicase | 0.87 | PfGW456L13_724 | | ATP-dependent DNA helicase UvrD/PcrA | low | > 87 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.91 | Psyr_3177 | | Recombination protein MgsA | 0.86 | Psyr_5065 | | ATP-dependent DNA helicase UvrD | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.91 | Psyr_3177 | | Recombination protein MgsA | 0.86 | Psyr_5065 | | ATP-dependent DNA helicase UvrD | low | > 86 |
| Pseudomonas fluorescens SBW25 | 0.91 | PFLU_RS18520 | | replication-associated recombination protein A | 0.86 | PFLU_RS29900 | | DNA helicase II | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.91 | PFLU_RS18520 | | replication-associated recombination protein A | 0.86 | PFLU_RS29900 | | DNA helicase II | 0.19 | 38 |
| Pseudomonas sp. S08-1 | 0.88 | OH686_00270 | | Replication-associated recombination protein RarA | 0.80 | OH686_13045 | | ATP-dependent DNA helicase UvrD/PcrA | low | > 80 |
| Pseudomonas stutzeri RCH2 | 0.86 | Psest_2034 | | ATPase related to the helicase subunit of the Holliday junction resolvase | 0.79 | Psest_4098 | | Superfamily I DNA and RNA helicases | 0.15 | 36 |
| Kangiella aquimarina DSM 16071 | 0.68 | B158DRAFT_1819 | | ATPase related to the helicase subunit of the Holliday junction resolvase | 0.61 | B158DRAFT_0238 | | Superfamily I DNA and RNA helicases | 0.33 | 28 |
| Marinobacter adhaerens HP15 | 0.64 | HP15_1817 | | recombination factor protein RarA | 0.64 | HP15_3403 | | UvrD/REP helicase | low | > 73 |
| Rahnella sp. WP5 | 0.60 | EX31_RS18515 | | replication-associated recombination protein A | 0.62 | EX31_RS15175 | | DNA helicase II | low | > 89 |
| Klebsiella michiganensis M5al | 0.60 | BWI76_RS09670 | | recombination factor protein RarA | 0.63 | BWI76_RS01220 | | DNA-dependent helicase II | 0.36 | 56 |
| Enterobacter asburiae PDN3 | 0.60 | EX28DRAFT_2040 | | ATPase related to the helicase subunit of the Holliday junction resolvase | 0.63 | EX28DRAFT_4482 | | ATP-dependent DNA helicase UvrD (EC 3.6.1.-) | low | > 76 |
| Serratia liquefaciens MT49 | 0.59 | IAI46_08570 | | replication-associated recombination protein A | 0.63 | IAI46_00735 | | DNA helicase II | low | > 86 |
| Shewanella sp. ANA-3 | 0.59 | Shewana3_2052 | | recombination factor protein RarA (RefSeq) | 0.61 | Shewana3_0469 | uvrD | DNA-dependent helicase II (RefSeq) | low | > 73 |
| Shewanella loihica PV-4 | 0.59 | Shew_2022 | | recombination factor protein RarA (RefSeq) | 0.60 | Shew_3385 | uvrD | DNA-dependent helicase II (RefSeq) | low | > 60 |
| Enterobacter sp. TBS_079 | 0.59 | MPMX20_01554 | | Replication-associated recombination protein A | 0.63 | MPMX20_04463 | | DNA helicase II | low | > 85 |
| Vibrio cholerae E7946 ATCC 55056 | 0.59 | CSW01_05630 | | replication-associated recombination protein A | 0.62 | CSW01_01015 | | DNA helicase II | 0.94 | 1 |
| Erwinia tracheiphila SCR3 | 0.59 | LU632_RS09755 | | replication-associated recombination protein A | 0.61 | LU632_RS24125 | uvrD | DNA helicase II | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.59 | GFF4896 | | FIG065221: Holliday junction DNA helicase | 0.63 | GFF241 | | ATP-dependent DNA helicase UvrD/PcrA | low | > 78 |
| Shewanella oneidensis MR-1 | 0.59 | SO2308 | | ATPase, AAA family (NCBI ptt file) | 0.61 | SO0467 | uvrD | DNA helicase II (NCBI ptt file) | 0.20 | 20 |
| Cupriavidus basilensis FW507-4G11 | 0.59 | RR42_RS04355 | | recombination factor protein RarA | 0.44 | RR42_RS15090 | | DNA helicase | 0.39 | 40 |
| Escherichia coli Nissle 1917 | 0.59 | ECOLIN_RS04745 | | replication-associated recombination protein RarA | 0.63 | ECOLIN_RS21885 | | DNA helicase II | low | > 52 |
| Escherichia fergusonii Becca | 0.59 | EFB2_03169 | | Replication-associated recombination protein A | 0.63 | EFB2_04824 | | DNA helicase II | low | > 86 |
| Escherichia coli ECRC101 | 0.59 | OKFHMN_05560 | rarA | replication-associated recombination protein RarA | 0.63 | OKFHMN_14410 | uvrD | DNA helicase II | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.59 | OHPLBJKB_02776 | | Replication-associated recombination protein A | 0.63 | OHPLBJKB_04237 | | DNA helicase II | 0.41 | 7 |
| Escherichia coli ECOR27 | 0.59 | NOLOHH_22130 | rarA | replication-associated recombination protein RarA | 0.63 | NOLOHH_06540 | uvrD | DNA helicase II | low | > 57 |
| Escherichia coli ECRC98 | 0.59 | JDDGAC_09370 | rarA | replication-associated recombination protein RarA | 0.63 | JDDGAC_18035 | uvrD | DNA helicase II | — | — |
| Escherichia coli ECRC102 | 0.59 | NIAGMN_03280 | rarA | replication-associated recombination protein RarA | 0.63 | NIAGMN_12165 | uvrD | DNA helicase II | — | — |
| Escherichia coli BW25113 | 0.59 | b0892 | ycaJ | recombination protein (NCBI) | 0.63 | b3813 | uvrD | DNA-dependent ATPase I and helicase II (NCBI) | 0.15 | 19 |
| Escherichia coli ECOR38 | 0.59 | HEPCGN_22950 | rarA | replication-associated recombination protein RarA | 0.63 | HEPCGN_13115 | uvrD | DNA helicase II | low | > 85 |
| Escherichia coli ECRC101 | 0.59 | MCAODC_24950 | rarA | replication-associated recombination protein RarA | 0.63 | MCAODC_04915 | uvrD | DNA helicase II | — | — |
| Escherichia coli BL21 | 0.59 | ECD_00896 | | recombination intermediate processing DNA-dependent ATPase | 0.63 | ECD_03689 | | DNA-dependent ATPase I and helicase II | — | — |
| Escherichia coli ECRC99 | 0.59 | KEDOAH_22175 | rarA | replication-associated recombination protein RarA | 0.63 | KEDOAH_13740 | uvrD | DNA helicase II | — | — |
| Pantoea sp. MT58 | 0.59 | IAI47_12900 | | replication-associated recombination protein A | 0.61 | IAI47_18390 | | DNA helicase II | low | > 76 |
| Escherichia coli ECRC62 | 0.59 | BNILDI_20385 | rarA | replication-associated recombination protein RarA | 0.63 | BNILDI_04995 | uvrD | DNA helicase II | — | — |
| Dickeya dadantii 3937 | 0.58 | DDA3937_RS09605 | | replication-associated recombination protein A | 0.63 | DDA3937_RS19880 | | DNA helicase II | low | > 74 |
| Dickeya dianthicola 67-19 | 0.58 | HGI48_RS09620 | | replication-associated recombination protein A | 0.62 | HGI48_RS20035 | | DNA helicase II | low | > 71 |
| Paraburkholderia sabiae LMG 24235 | 0.58 | QEN71_RS03415 | | replication-associated recombination protein A | 0.44 | QEN71_RS05110 | | 3'-5' exonuclease | — | — |
| Dickeya dianthicola ME23 | 0.58 | DZA65_RS09930 | | replication-associated recombination protein A | 0.63 | DZA65_RS21080 | | DNA helicase II | low | > 75 |
| Ralstonia sp. UNC404CL21Col | 0.58 | ABZR87_RS16030 | | replication-associated recombination protein A | 0.44 | ABZR87_RS15705 | | UvrD-helicase domain-containing protein | low | > 80 |
| Paraburkholderia graminis OAS925 | 0.58 | ABIE53_001292 | | putative ATPase | 0.44 | ABIE53_002936 | | DNA helicase-2/ATP-dependent DNA helicase PcrA | — | — |
| Pectobacterium carotovorum WPP14 | 0.58 | HER17_RS12345 | | replication-associated recombination protein A | 0.63 | HER17_RS01360 | | DNA helicase II | low | > 75 |
| Shewanella amazonensis SB2B | 0.58 | Sama_1774 | | recombination factor protein RarA (RefSeq) | 0.60 | Sama_0419 | uvrD | DNA-dependent helicase II (RefSeq) | low | > 62 |
| Ralstonia solanacearum PSI07 | 0.58 | RPSI07_RS13205 | | replication-associated recombination protein A | 0.43 | RPSI07_RS13455 | | DNA-dependent helicase | — | — |
| Burkholderia phytofirmans PsJN | 0.57 | BPHYT_RS05100 | | ATPase AAA | 0.45 | BPHYT_RS13840 | | DNA-dependent helicase | — | — |
| Ralstonia solanacearum UW163 | 0.57 | UW163_RS09525 | | replication-associated recombination protein A | 0.43 | UW163_RS09895 | | DNA-dependent helicase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.57 | RALBFv3_RS04145 | | replication-associated recombination protein A | 0.43 | RALBFv3_RS03775 | | DNA-dependent helicase | — | — |
| Dechlorosoma suillum PS | 0.56 | Dsui_1694 | | AAA ATPase | 0.45 | Dsui_1227 | | DNA/RNA helicase, superfamily I | low | > 51 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.56 | H281DRAFT_00180 | | Recombination protein MgsA | 0.44 | H281DRAFT_04469 | | ATP-dependent DNA helicase UvrD | — | — |
| Herbaspirillum seropedicae SmR1 | 0.56 | HSERO_RS09515 | | ATPase AAA | 0.45 | HSERO_RS02160 | | DNA-dependent helicase | low | > 78 |
| Ralstonia solanacearum GMI1000 | 0.56 | RS_RS11735 | | replication-associated recombination protein A | 0.44 | RS_RS11220 | | DNA-dependent helicase | low | > 80 |
| Castellaniella sp019104865 MT123 | 0.55 | ABCV34_RS07220 | | replication-associated recombination protein A | 0.42 | ABCV34_RS05210 | | UvrD-helicase domain-containing protein | low | > 48 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.55 | Xcc-8004.2744.1 | | FIG065221: Holliday junction DNA helicase | 0.53 | Xcc-8004.5114.1 | | ATP-dependent DNA helicase UvrD/PcrA | low | > 74 |
| Alteromonas macleodii MIT1002 | 0.54 | MIT1002_02178 | | Replication-associated recombination protein A | 0.61 | MIT1002_00153 | | DNA helicase II | low | > 70 |
| Variovorax sp. SCN45 | 0.54 | GFF6034 | | Replication-associated recombination protein RarA | 0.44 | GFF4000 | | ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) | 0.43 | 53 |
| Variovorax sp. OAS795 | 0.54 | ABID97_RS07835 | | replication-associated recombination protein A | 0.45 | ABID97_RS09150 | | UvrD-helicase domain-containing protein | 0.34 | 36 |
| Acidovorax sp. GW101-3H11 | 0.53 | Ac3H11_1696 | | FIG065221: Holliday junction DNA helicase | 0.43 | Ac3H11_1660 | | ATP-dependent DNA helicase UvrD/PcrA | low | > 79 |
| Rhodanobacter sp. FW510-T8 | 0.53 | OKGIIK_07580 | rarA | recombination factor protein RarA | 0.54 | OKGIIK_16775 | | DNA helicase | low | > 52 |
| Rhodanobacter denitrificans FW104-10B01 | 0.53 | LRK54_RS17320 | | replication-associated recombination protein A | 0.53 | LRK54_RS06850 | | DNA helicase II | low | > 59 |
| Dyella japonica UNC79MFTsu3.2 | 0.53 | ABZR86_RS01825 | | replication-associated recombination protein A | 0.54 | ABZR86_RS16965 | | DNA helicase II | 0.88 | 7 |
| Rhodanobacter denitrificans MT42 | 0.53 | LRK55_RS17545 | | replication-associated recombination protein A | 0.53 | LRK55_RS06595 | | DNA helicase II | — | — |
| Lysobacter sp. OAE881 | 0.52 | ABIE51_RS11445 | | replication-associated recombination protein A | 0.55 | ABIE51_RS01985 | | DNA helicase II | 0.80 | 1 |
| Azospirillum brasilense Sp245 | 0.48 | AZOBR_RS06885 | | ATPase AAA | 0.37 | AZOBR_RS12445 | | DNA helicase II | low | > 97 |
| Phaeobacter inhibens DSM 17395 | 0.48 | PGA1_c01930 | | replication-associated recombination protein A | 0.33 | PGA1_c09450 | | DNA helicase II UvrD | low | > 62 |
| Azospirillum sp. SherDot2 | 0.47 | MPMX19_01528 | | Replication-associated recombination protein A | 0.36 | MPMX19_01610 | | ATP-dependent DNA helicase PcrA | low | > 112 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.47 | A4249_RS07890 | | replication-associated recombination protein A | 0.33 | A4249_RS04960 | | UvrD-helicase domain-containing protein | low | > 48 |
| Magnetospirillum magneticum AMB-1 | 0.46 | AMB_RS17620 | | replication-associated recombination protein A | 0.33 | AMB_RS03725 | | DNA helicase II | low | > 64 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.46 | GFF777 | | FIG065221: Holliday junction DNA helicase | 0.43 | GFF5598 | | ATP-dependent DNA helicase UvrD/PcrA | — | — |
| Dinoroseobacter shibae DFL-12 | 0.45 | Dshi_0313 | | AAA ATPase central domain protein (RefSeq) | 0.34 | Dshi_2483 | | UvrD/REP helicase (RefSeq) | — | — |
| Rhodospirillum rubrum S1H | 0.45 | Rru_A2660 | | AAA ATPase, central region (NCBI) | 0.34 | Rru_A1536 | | UvrD/REP helicase (NCBI) | low | > 58 |
| Bosea sp. OAE506 | 0.44 | ABIE41_RS14690 | | replication-associated recombination protein A | 0.36 | ABIE41_RS12730 | | UvrD-helicase domain-containing protein | low | > 77 |
| Bacteroides ovatus ATCC 8483 | 0.43 | BACOVA_03971 | | ATPase, AAA family | 0.32 | BACOVA_02365 | | UvrD/REP helicase | — | — |
| Bacteroides stercoris CC31F | 0.42 | HMPREF1181_RS16975 | | replication-associated recombination protein A | 0.32 | HMPREF1181_RS16505 | | UvrD-helicase domain-containing protein | low | > 56 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.42 | CA265_RS22400 | | AAA family ATPase | 0.32 | CA265_RS12980 | | ATP-dependent DNA helicase | — | — |
| Parabacteroides merdae CL09T00C40 | 0.42 | HMPREF1078_RS15395 | | replication-associated recombination protein A | 0.31 | HMPREF1078_RS03560 | | 3'-5' exonuclease | low | > 61 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.42 | BT1205 | | putative ATPase, AAA family (NCBI ptt file) | 0.32 | BT0657 | | ATP-dependent DNA helicase (NCBI ptt file) | — | — |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.41 | ABZR88_RS20285 | | replication-associated recombination protein A | 0.32 | ABZR88_RS07840 | | ATP-dependent helicase | — | — |
| Phocaeicola dorei CL03T12C01 | 0.41 | ABI39_RS20200 | | replication-associated recombination protein A | 0.31 | ABI39_RS17735 | | UvrD-helicase domain-containing protein | — | — |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.41 | CA264_02215 | | AAA family ATPase | 0.32 | CA264_07795 | | ATP-dependent DNA helicase | — | — |
| Phocaeicola vulgatus CL09T03C04 | 0.41 | HMPREF1058_RS06440 | | replication-associated recombination protein A | 0.31 | HMPREF1058_RS03305 | | UvrD-helicase domain-containing protein | low | > 67 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.41 | Echvi_4603 | | ATPase related to the helicase subunit of the Holliday junction resolvase | 0.34 | Echvi_0292 | | Superfamily I DNA and RNA helicases | — | — |
| Mycobacterium tuberculosis H37Rv | 0.35 | Rv2559c | | Conserved hypothetical alanine leucine valine rich protein | 0.33 | Rv0949 | | Probable ATP-dependent DNA helicase II UvrD1 | low | > 58 |
| Fusobacterium nucleatum SB010 | 0.33 | HUW76_02735 | | replication-associated recombination protein A | 0.31 | HUW76_07175 | | UvrD-helicase domain-containing protein | low | > 35 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.33 | DVU1686 | | ATPase, AAA family (TIGR) | 0.20 | DVU0156 | pcrA | ATP-dependent DNA helicase, UvrD/REP family (TIGR) | low | > 55 |
Not shown: 10 genomes with orthologs for PP_4002 only; 2 genomes with orthologs for PP_5352 only