Conservation of cofitness between PP_4722 and PP_4900 in Pseudomonas putida KT2440

87 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4722 Transcription elongation factor GreA 1.0 PP_4900 epoxyqueuosine reductase 0.46 4
Pseudomonas fluorescens FW300-N2E2 0.89 Pf6N2E2_3363 Transcription elongation factor GreA 0.81 Pf6N2E2_3620 Epoxyqueuosine (oQ) reductase QueG — —
Pseudomonas fluorescens FW300-N2C3 0.87 AO356_07475 transcription elongation factor GreA 0.81 AO356_08685 epoxyqueuosine reductase — —
Pseudomonas sp. RS175 0.85 PFR28_00078 Transcription elongation factor GreA 0.81 PFR28_05115 Epoxyqueuosine reductase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.82 Psyr_4190 transcription elongation factor GreA 0.82 Psyr_0566 4Fe-4S cluster binding protein — —
Pseudomonas syringae pv. syringae B728a 0.82 Psyr_4190 transcription elongation factor GreA 0.82 Psyr_0566 4Fe-4S cluster binding protein — —
Pseudomonas sp. S08-1 0.81 OH686_17085 Transcription elongation factor GreA 0.82 OH686_09500 epoxyqueuosine reductase low > 80
Pseudomonas fluorescens SBW25 0.80 PFLU_RS25875 transcription elongation factor GreA 0.82 PFLU_RS02540 tRNA epoxyqueuosine(34) reductase QueG low > 109
Pseudomonas fluorescens SBW25-INTG 0.80 PFLU_RS25875 transcription elongation factor GreA 0.82 PFLU_RS02540 tRNA epoxyqueuosine(34) reductase QueG low > 109
Pseudomonas fluorescens FW300-N1B4 0.80 Pf1N1B4_1171 Transcription elongation factor GreA 0.82 Pf1N1B4_1418 Epoxyqueuosine (oQ) reductase QueG — —
Pseudomonas fluorescens FW300-N2E3 0.80 AO353_05625 transcription elongation factor GreA 0.82 AO353_13115 epoxyqueuosine reductase low > 101
Pseudomonas fluorescens GW456-L13 0.79 PfGW456L13_5098 Transcription elongation factor GreA 0.81 PfGW456L13_160 Epoxyqueuosine (oQ) reductase QueG — —
Pseudomonas simiae WCS417 0.79 PS417_24035 transcription elongation factor GreA 0.82 PS417_02460 epoxyqueuosine reductase — —
Pseudomonas stutzeri RCH2 0.77 Psest_0969 transcription elongation factor GreA 0.78 Psest_0677 iron-sulfur cluster binding protein, putative low > 67
Shewanella loihica PV-4 0.61 Shew_2837 transcription elongation factor GreA (RefSeq) 0.54 Shew_2979 putative iron-sulfur cluster binding protein (RefSeq) low > 60
Shewanella sp. ANA-3 0.61 Shewana3_1017 transcription elongation factor GreA (RefSeq) 0.54 Shewana3_0745 putative iron-sulfur cluster binding protein (RefSeq) low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.61 GFF2922 Transcription elongation factor GreA 0.57 GFF819 Epoxyqueuosine (oQ) reductase QueG low > 78
Escherichia coli ECRC99 0.60 KEDOAH_10105 greA transcription elongation factor GreA 0.57 KEDOAH_15870 queG tRNA epoxyqueuosine(34) reductase QueG — —
Escherichia coli BL21 0.60 ECD_03046 transcript cleavage factor 0.57 ECD_04033 epoxyqueuosine reductase, cobalamine-stimulated; queosine biosynthesis low > 60
Escherichia coli ECRC101 0.60 OKFHMN_18045 greA transcription elongation factor GreA 0.57 OKFHMN_12285 queG tRNA epoxyqueuosine(34) reductase QueG — —
Escherichia coli ECOR38 0.60 HEPCGN_16920 greA transcription elongation factor GreA 0.57 HEPCGN_10515 queG tRNA epoxyqueuosine(34) reductase QueG — —
Escherichia coli ECOR27 0.60 NOLOHH_09845 greA transcription elongation factor GreA 0.57 NOLOHH_04550 queG tRNA epoxyqueuosine(34) reductase QueG — —
Escherichia coli ECRC101 0.60 MCAODC_08565 greA transcription elongation factor GreA 0.56 MCAODC_02800 queG tRNA epoxyqueuosine(34) reductase QueG — —
Escherichia coli Nissle 1917 0.60 ECOLIN_RS18320 transcription elongation factor GreA 0.56 ECOLIN_RS24200 tRNA epoxyqueuosine(34) reductase QueG — —
Escherichia coli ECRC102 0.60 NIAGMN_15805 greA transcription elongation factor GreA 0.57 NIAGMN_10135 queG tRNA epoxyqueuosine(34) reductase QueG — —
Escherichia coli ECRC62 0.60 BNILDI_01690 greA transcription elongation factor GreA 0.57 BNILDI_06940 queG tRNA epoxyqueuosine(34) reductase QueG — —
Escherichia fergusonii Becca 0.60 EFB2_00642 Transcription elongation factor GreA 0.56 EFB2_04369 Epoxyqueuosine reductase low > 86
Escherichia coli BW25113 0.60 b3181 greA transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) 0.57 b4166 yjeS predicted Fe-S electron transport protein (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.60 OHPLBJKB_00519 Transcription elongation factor GreA 0.57 OHPLBJKB_03876 Epoxyqueuosine reductase low > 73
Escherichia coli ECRC98 0.60 JDDGAC_21670 greA transcription elongation factor GreA 0.57 JDDGAC_15925 queG tRNA epoxyqueuosine(34) reductase QueG — —
Shewanella oneidensis MR-1 0.60 SO1191 greA transcription elongation factor GreA (NCBI ptt file) 0.54 SO3861 iron-sulfur cluster-binding protein (NCBI ptt file) low > 76
Alteromonas macleodii MIT1002 0.60 MIT1002_01468 Transcript cleavage factor GreA 0.59 MIT1002_03794 Epoxyqueuosine reductase low > 70
Shewanella amazonensis SB2B 0.59 Sama_0951 GreA/GreB family elongation factor (RefSeq) 0.53 Sama_2625 iron-sulfur cluster-binding protein (RefSeq) low > 62
Marinobacter adhaerens HP15 0.59 HP15_3076 protein containing prokaryotic transcription elongation factor GreA domain 0.67 HP15_2505 iron-sulfur cluster binding protein low > 73
Enterobacter asburiae PDN3 0.59 EX28DRAFT_3232 transcription elongation factor GreA 0.56 EX28DRAFT_3363 epoxyqueuosine reductase low > 76
Enterobacter sp. TBS_079 0.59 MPMX20_04085 Transcription elongation factor GreA 0.56 MPMX20_00447 Epoxyqueuosine reductase low > 85
Klebsiella michiganensis M5al 0.59 BWI76_RS25160 transcription elongation factor GreA 0.56 BWI76_RS02505 tRNA epoxyqueuosine(34) reductase QueG low > 92
Pantoea sp. MT58 0.58 IAI47_17080 transcription elongation factor GreA 0.57 IAI47_02560 tRNA epoxyqueuosine(34) reductase QueG low > 76
Kangiella aquimarina DSM 16071 0.58 B158DRAFT_0617 transcription elongation factor GreA 0.48 B158DRAFT_0486 iron-sulfur cluster binding protein, putative low > 40
Pectobacterium carotovorum WPP14 0.57 HER17_RS18330 transcription elongation factor GreA 0.58 HER17_RS02555 tRNA epoxyqueuosine(34) reductase QueG — —
Dickeya dadantii 3937 0.57 DDA3937_RS03015 transcription elongation factor GreA 0.57 DDA3937_RS18645 tRNA epoxyqueuosine(34) reductase QueG — —
Dickeya dianthicola 67-19 0.57 HGI48_RS03185 transcription elongation factor GreA 0.57 HGI48_RS18575 tRNA epoxyqueuosine(34) reductase QueG low > 71
Dickeya dianthicola ME23 0.57 DZA65_RS03180 transcription elongation factor GreA 0.56 DZA65_RS19710 tRNA epoxyqueuosine(34) reductase QueG low > 75
Serratia liquefaciens MT49 0.56 IAI46_01880 transcription elongation factor GreA 0.57 IAI46_01595 tRNA epoxyqueuosine(34) reductase QueG low > 86
Acinetobacter radioresistens SK82 0.56 MPMX26_00765 Transcription elongation factor GreA 0.52 MPMX26_01783 Epoxyqueuosine reductase low > 36
Rahnella sp. WP5 0.56 EX31_RS08595 transcription elongation factor GreA 0.56 EX31_RS08850 tRNA epoxyqueuosine(34) reductase QueG low > 89
Vibrio cholerae E7946 ATCC 55056 0.53 CSW01_03330 transcription elongation factor GreA 0.57 CSW01_01810 tRNA epoxyqueuosine(34) reductase QueG low > 62
Xanthomonas campestris pv. campestris strain 8004 0.52 Xcc-8004.2911.1 Transcription elongation factor GreA 0.59 Xcc-8004.2252.1 Epoxyqueuosine (oQ) reductase QueG low > 74
Lysobacter sp. OAE881 0.51 ABIE51_RS11610 transcription elongation factor GreA 0.59 ABIE51_RS08045 tRNA epoxyqueuosine(34) reductase QueG low > 62
Dinoroseobacter shibae DFL-12 0.50 Dshi_3076 transcription elongation factor GreA (RefSeq) 0.34 Dshi_3307 domain of unknown function DUF1730 (RefSeq) low > 64
Acidovorax sp. GW101-3H11 0.49 Ac3H11_437 Transcription elongation factor GreA 0.55 Ac3H11_306 Epoxyqueuosine (oQ) reductase QueG low > 79
Dechlorosoma suillum PS 0.49 Dsui_3063 transcription elongation factor GreA 0.50 Dsui_3502 iron-sulfur cluster binding protein, putative low > 51
Brevundimonas sp. GW460-12-10-14-LB2 0.48 A4249_RS00695 transcription elongation factor GreA 0.34 A4249_RS11375 tRNA epoxyqueuosine(34) reductase QueG — —
Herbaspirillum seropedicae SmR1 0.48 HSERO_RS06930 transcription elongation factor GreA 0.57 HSERO_RS04220 epoxyqueuosine reductase — —
Ralstonia sp. UNC404CL21Col 0.48 ABZR87_RS14135 transcription elongation factor GreA 0.52 ABZR87_RS00775 tRNA epoxyqueuosine(34) reductase QueG low > 80
Paraburkholderia sabiae LMG 24235 0.47 QEN71_RS04785 transcription elongation factor GreA 0.52 QEN71_RS02745 tRNA epoxyqueuosine(34) reductase QueG low > 153
Ralstonia solanacearum PSI07 0.47 RPSI07_RS15260 transcription elongation factor GreA 0.53 RPSI07_RS12175 tRNA epoxyqueuosine(34) reductase QueG low > 81
Cupriavidus basilensis FW507-4G11 0.47 RR42_RS13505 transcription elongation factor GreA 0.52 RR42_RS03405 epoxyqueuosine reductase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.47 GFF4897 Transcription elongation factor GreA 0.56 GFF5474 Epoxyqueuosine (oQ) reductase QueG low > 90
Phaeobacter inhibens DSM 17395 0.47 PGA1_c03290 transcription elongation factor GreA 0.33 PGA1_c34310 Uncharacterized Fe-S protein low > 62
Burkholderia phytofirmans PsJN 0.46 BPHYT_RS14185 transcription elongation factor GreA 0.53 BPHYT_RS15960 iron-sulfur cluster binding protein low > 109
Paraburkholderia graminis OAS925 0.46 ABIE53_003003 transcription elongation factor GreA 0.54 ABIE53_003363 epoxyqueuosine reductase low > 113
Ralstonia solanacearum IBSBF1503 0.46 RALBFv3_RS02185 transcription elongation factor GreA 0.53 RALBFv3_RS05120 tRNA epoxyqueuosine(34) reductase QueG low > 76
Paraburkholderia bryophila 376MFSha3.1 0.46 H281DRAFT_04404 GreA/GreB family elongation factor 0.52 H281DRAFT_04128 epoxyqueuosine reductase low > 103
Ralstonia solanacearum UW163 0.46 UW163_RS15495 transcription elongation factor GreA 0.53 UW163_RS08505 tRNA epoxyqueuosine(34) reductase QueG — —
Caulobacter crescentus NA1000 0.46 CCNA_02941 transcription elongation factor greA 0.35 CCNA_03753 iron-sulfur cluster-binding protein low > 66
Ralstonia solanacearum GMI1000 0.46 RS_RS07635 transcription elongation factor GreA 0.53 RS_RS12740 tRNA epoxyqueuosine(34) reductase QueG — —
Caulobacter crescentus NA1000 Δfur 0.46 CCNA_02941 transcription elongation factor greA 0.35 CCNA_03753 iron-sulfur cluster-binding protein low > 67
Variovorax sp. SCN45 0.45 GFF374 Transcription elongation factor GreA 0.51 GFF4805 Epoxyqueuosine reductase (EC 1.17.99.6) QueG low > 127
Castellaniella sp019104865 MT123 0.45 ABCV34_RS15540 transcription elongation factor GreA 0.52 ABCV34_RS13905 tRNA epoxyqueuosine(34) reductase QueG low > 48
Bosea sp. OAE506 0.45 ABIE41_RS11905 transcription elongation factor GreA 0.35 ABIE41_RS03135 tRNA epoxyqueuosine(34) reductase QueG — —
Magnetospirillum magneticum AMB-1 0.45 AMB_RS03610 transcription elongation factor GreA 0.34 AMB_RS03995 tRNA epoxyqueuosine(34) reductase QueG low > 64
Sinorhizobium meliloti 1021 0.45 SMc01218 transcription elongation factor GreA 0.35 SMc00406 4Fe-4S ferredoxin — —
Agrobacterium fabrum C58 0.45 Atu2182 transcription elongation facto 0.33 Atu0292 iron-sulfur cluster binding protein — —
Variovorax sp. OAS795 0.45 ABID97_RS17070 transcription elongation factor GreA 0.55 ABID97_RS20285 tRNA epoxyqueuosine(34) reductase QueG low > 91
Rhodopseudomonas palustris CGA009 0.42 TX73_021095 transcription elongation factor GreA 0.33 TX73_000215 tRNA epoxyqueuosine(34) reductase QueG — —
Rhodospirillum rubrum S1H 0.41 Rru_A2887 GreA/GreB family elongation factor (NCBI) 0.39 Rru_A0279 4Fe-4S ferredoxin, iron-sulfur binding (NCBI) low > 58
Rhodanobacter sp. FW510-T8 0.40 OKGIIK_07290 greA transcription elongation factor GreA 0.62 OKGIIK_03900 queG tRNA epoxyqueuosine(34) reductase QueG low > 52
Sphingomonas koreensis DSMZ 15582 0.39 Ga0059261_0008 transcription elongation factor GreA 0.33 Ga0059261_1058 epoxyqueuosine reductase — —
Rhodanobacter denitrificans FW104-10B01 0.39 LRK54_RS18005 transcription elongation factor GreA 0.62 LRK54_RS15130 tRNA epoxyqueuosine(34) reductase QueG low > 59
Rhodanobacter denitrificans MT42 0.39 LRK55_RS17860 transcription elongation factor GreA 0.62 LRK55_RS14845 tRNA epoxyqueuosine(34) reductase QueG low > 63
Dyella japonica UNC79MFTsu3.2 0.39 ABZR86_RS05595 transcription elongation factor GreA 0.65 ABZR86_RS00835 tRNA epoxyqueuosine(34) reductase QueG low > 74
Parabacteroides merdae CL09T00C40 0.36 HMPREF1078_RS17725 transcription elongation factor GreA 0.29 HMPREF1078_RS06835 tRNA epoxyqueuosine(34) reductase QueG low > 61
Pedobacter sp. GW460-11-11-14-LB5 0.35 CA265_RS23190 transcription elongation factor GreA 0.35 CA265_RS07695 tRNA epoxyqueuosine(34) reductase QueG low > 88
Mucilaginibacter yixingensis YX-36 DSM 26809 0.35 ABZR88_RS00130 transcription elongation factor GreA 0.36 ABZR88_RS07975 tRNA epoxyqueuosine(34) reductase QueG low > 71
Bacteroides thetaiotaomicron VPI-5482 0.34 BT2565 transcription elongation factor greA (NCBI ptt file) 0.27 BT3245 putative iron-sulfur cluster-binding protein (NCBI ptt file) — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.32 Echvi_0180 transcription elongation factor GreA 0.35 Echvi_0824 iron-sulfur cluster binding protein, putative low > 79
Pontibacter actiniarum KMM 6156, DSM 19842 0.31 CA264_03870 transcription elongation factor GreA 0.34 CA264_19810 epoxyqueuosine reductase low > 74

Not shown: 9 genomes with orthologs for PP_4722 only; 2 genomes with orthologs for PP_4900 only