Conservation of cofitness between PP_4098 and PP_1629 in Pseudomonas putida KT2440

92 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4098 UvrABC system protein C 1.0 PP_1629 Protein RecA 0.25 11
Pseudomonas simiae WCS417 0.87 PS417_10725 excinuclease ABC subunit C 0.88 PS417_05815 recombinase RecA 0.33 10
Pseudomonas fluorescens FW300-N2C3 0.87 AO356_00350 excinuclease ABC subunit C 0.88 AO356_05670 recombinase RecA 0.25 60
Pseudomonas fluorescens SBW25-INTG 0.87 PFLU_RS10770 excinuclease ABC subunit UvrC 0.88 PFLU_RS05885 recombinase RecA low > 109
Pseudomonas fluorescens SBW25 0.87 PFLU_RS10770 excinuclease ABC subunit UvrC 0.88 PFLU_RS05885 recombinase RecA low > 109
Pseudomonas syringae pv. syringae B728a 0.86 Psyr_2896 Excinuclease ABC subunit C 0.88 Psyr_1378 RecA protein 0.39 11
Pseudomonas syringae pv. syringae B728a ΔmexB 0.86 Psyr_2896 Excinuclease ABC subunit C 0.88 Psyr_1378 RecA protein 0.44 14
Pseudomonas fluorescens GW456-L13 0.86 PfGW456L13_2886 Excinuclease ABC subunit C 0.89 PfGW456L13_4668 RecA protein low > 87
Pseudomonas fluorescens FW300-N1B4 0.86 Pf1N1B4_5618 Excinuclease ABC subunit C 0.88 Pf1N1B4_3143 RecA protein low > 87
Pseudomonas fluorescens FW300-N2E3 0.86 AO353_21835 excinuclease ABC subunit C 0.88 AO353_16805 recombinase RecA 0.28 78
Pseudomonas sp. RS175 0.84 PFR28_01411 UvrABC system protein C 0.88 PFR28_00472 Protein RecA low > 88
Pseudomonas stutzeri RCH2 0.84 Psest_2259 excinuclease ABC, C subunit 0.89 Psest_2872 protein RecA 0.31 17
Pseudomonas fluorescens FW300-N2E2 0.84 Pf6N2E2_2021 Excinuclease ABC subunit C 0.88 Pf6N2E2_2993 RecA protein — —
Pseudomonas sp. S08-1 0.82 OH686_00340 excinuclease ABC subunit C 0.89 OH686_18205 protein RecA low > 80
Marinobacter adhaerens HP15 0.56 HP15_1568 excinuclease ABC subunit C 0.80 HP15_1048 recombinase A low > 73
Rhodanobacter denitrificans FW104-10B01 0.55 LRK54_RS00380 excinuclease ABC subunit UvrC 0.75 LRK54_RS14980 recombinase RecA low > 59
Rhodanobacter denitrificans MT42 0.55 LRK55_RS00120 excinuclease ABC subunit UvrC 0.75 LRK55_RS14695 recombinase RecA low > 63
Rhodanobacter sp. FW510-T8 0.54 OKGIIK_06930 uvrC excinuclease ABC subunit UvrC 0.75 OKGIIK_03740 recA recombinase RecA low > 52
Dyella japonica UNC79MFTsu3.2 0.53 ABZR86_RS02245 excinuclease ABC subunit UvrC 0.74 ABZR86_RS00660 recombinase RecA 0.77 14
Escherichia coli BL21 0.52 ECD_01878 excinuclease UvrABC, endonuclease subunit 0.71 ECD_02549 DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor low > 60
Escherichia coli BW25113 0.52 b1913 uvrC excinuclease ABC, subunit C; repair of UV damage to DNA (VIMSS) 0.71 b2699 recA recombinase A (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.52 OHPLBJKB_01816 UvrABC system protein C 0.71 OHPLBJKB_01035 Protein RecA low > 73
Escherichia fergusonii Becca 0.52 EFB2_02033 UvrABC system protein C 0.71 EFB2_01225 Protein RecA low > 86
Escherichia coli Nissle 1917 0.52 ECOLIN_RS10895 excinuclease ABC subunit UvrC 0.71 ECOLIN_RS15060 recombinase RecA — —
Escherichia coli ECRC98 0.52 JDDGAC_00415 uvrC excinuclease ABC subunit UvrC 0.71 JDDGAC_24370 recA recombinase RecA — —
Escherichia coli ECRC62 0.52 BNILDI_15235 uvrC excinuclease ABC subunit UvrC 0.71 BNILDI_11105 recA recombinase RecA — —
Escherichia coli ECRC101 0.52 MCAODC_19565 uvrC excinuclease ABC subunit UvrC 0.71 MCAODC_11230 recA recombinase RecA — —
Escherichia coli ECRC101 0.52 OKFHMN_25825 uvrC excinuclease ABC subunit UvrC 0.71 OKFHMN_20705 recA recombinase RecA — —
Escherichia coli ECRC99 0.52 KEDOAH_02265 uvrC excinuclease ABC subunit UvrC 0.71 KEDOAH_07430 recA recombinase RecA — —
Klebsiella michiganensis M5al 0.52 BWI76_RS18330 excinuclease ABC subunit C 0.72 BWI76_RS22180 recombinase RecA — —
Escherichia coli ECRC102 0.52 NIAGMN_02225 uvrC excinuclease ABC subunit UvrC 0.71 NIAGMN_18475 recA recombinase RecA — —
Escherichia coli ECOR38 0.52 HEPCGN_04180 uvrC excinuclease ABC subunit UvrC 0.71 HEPCGN_19900 recA recombinase RecA low > 85
Escherichia coli ECOR27 0.52 NOLOHH_16445 uvrC excinuclease ABC subunit UvrC 0.71 NOLOHH_12545 recA recombinase RecA — —
Serratia liquefaciens MT49 0.52 IAI46_09210 excinuclease ABC subunit UvrC 0.71 IAI46_03840 recombinase RecA 0.71 14
Pantoea sp. MT58 0.51 IAI47_12465 excinuclease ABC subunit UvrC 0.70 IAI47_04300 recombinase RecA low > 76
Erwinia tracheiphila SCR3 0.51 LU632_RS10195 uvrC excinuclease ABC subunit UvrC 0.72 LU632_RS15735 recA recombinase RecA low > 74
Vibrio cholerae E7946 ATCC 55056 0.51 CSW01_06140 excinuclease ABC subunit C 0.73 CSW01_02875 DNA recombination/repair protein RecA low > 62
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.51 GFF1700 Excinuclease ABC subunit C 0.72 GFF4693 RecA protein — —
Shewanella sp. ANA-3 0.51 Shewana3_1609 uvrC excinuclease ABC subunit C (RefSeq) 0.72 Shewana3_1126 recA recombinase A (RefSeq) low > 73
Shewanella oneidensis MR-1 0.51 SO1861 uvrC excinuclease ABC, C subunit (NCBI ptt file) 0.73 SO3430 recA recA protein (NCBI ptt file) 0.46 13
Dickeya dianthicola 67-19 0.51 HGI48_RS13795 excinuclease ABC subunit UvrC 0.72 HGI48_RS16355 recombinase RecA low > 71
Dickeya dianthicola ME23 0.51 DZA65_RS14285 excinuclease ABC subunit UvrC 0.72 DZA65_RS17450 recombinase RecA — —
Dickeya dadantii 3937 0.51 DDA3937_RS13700 excinuclease ABC subunit UvrC 0.72 DDA3937_RS16245 recombinase RecA low > 74
Shewanella amazonensis SB2B 0.51 Sama_1608 uvrC excinuclease ABC subunit C (RefSeq) 0.72 Sama_1046 recA recombinase A (RefSeq) 0.51 14
Shewanella loihica PV-4 0.51 Shew_1825 uvrC excinuclease ABC subunit C (RefSeq) 0.71 Shew_1215 recA recombinase A (RefSeq) low > 60
Pectobacterium carotovorum WPP14 0.51 HER17_RS07715 excinuclease ABC subunit UvrC 0.73 HER17_RS05045 recombinase RecA low > 75
Enterobacter asburiae PDN3 0.51 EX28DRAFT_0634 Excinuclease ABC subunit C 0.71 EX28DRAFT_2785 protein RecA — —
Enterobacter sp. TBS_079 0.51 MPMX20_02838 UvrABC system protein C 0.71 MPMX20_03580 Protein RecA low > 85
Rahnella sp. WP5 0.51 EX31_RS24150 excinuclease ABC subunit UvrC 0.73 EX31_RS07800 recombinase RecA low > 89
Dechlorosoma suillum PS 0.50 Dsui_2470 excinuclease ABC, C subunit 0.69 Dsui_0707 protein RecA 0.69 19
Kangiella aquimarina DSM 16071 0.50 B158DRAFT_1273 Excinuclease ABC subunit C 0.73 B158DRAFT_1531 protein RecA 0.61 13
Acinetobacter radioresistens SK82 0.49 MPMX26_00228 UvrABC system protein C 0.74 MPMX26_01308 Protein RecA 0.42 17
Alteromonas macleodii MIT1002 0.49 MIT1002_02153 Excinuclease ABC subunit C 0.75 MIT1002_00955 Recombinase A low > 70
Lysobacter sp. OAE881 0.47 ABIE51_RS12455 excinuclease ABC subunit UvrC 0.71 ABIE51_RS07800 recombinase RecA low > 62
Xanthomonas campestris pv. campestris strain 8004 0.47 Xcc-8004.2477.1 Excinuclease ABC subunit C 0.69 Xcc-8004.3111.1 RecA protein — —
Herbaspirillum seropedicae SmR1 0.46 HSERO_RS09690 excinuclease ABC subunit C 0.64 HSERO_RS03270 protein RecA 0.40 24
Cupriavidus basilensis FW507-4G11 0.45 RR42_RS14000 excinuclease ABC subunit C 0.67 RR42_RS03080 recombinase RecA 0.44 13
Ralstonia sp. UNC404CL21Col 0.45 ABZR87_RS10245 excinuclease ABC subunit UvrC 0.65 ABZR87_RS07965 recombinase RecA 0.69 12
Ralstonia solanacearum GMI1000 0.44 RS_RS05305 excinuclease ABC subunit UvrC 0.65 RS_RS02760 DNA recombination/repair protein RecA — —
Ralstonia solanacearum PSI07 0.44 RPSI07_RS18935 excinuclease ABC subunit UvrC 0.66 RPSI07_RS21260 recombinase RecA low > 81
Ralstonia solanacearum UW163 0.44 UW163_RS11990 excinuclease ABC subunit UvrC 0.65 UW163_RS01625 recombinase RecA — —
Ralstonia solanacearum IBSBF1503 0.44 RALBFv3_RS14525 excinuclease ABC subunit UvrC 0.65 RALBFv3_RS12010 recombinase RecA low > 76
Castellaniella sp019104865 MT123 0.44 ABCV34_RS06980 excinuclease ABC subunit UvrC 0.70 ABCV34_RS04460 recombinase RecA low > 48
Variovorax sp. OAS795 0.42 ABID97_RS10635 excinuclease ABC subunit UvrC 0.65 ABID97_RS02275 recombinase RecA low > 91
Variovorax sp. SCN45 0.42 GFF2859 Excinuclease ABC subunit C 0.65 GFF5390 RecA protein low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.41 GFF3847 Excinuclease ABC subunit C 0.64 GFF2500 RecA protein — —
Acidovorax sp. GW101-3H11 0.40 Ac3H11_373 Excinuclease ABC subunit C 0.66 Ac3H11_1255 RecA protein — —
Rhodopseudomonas palustris CGA009 0.39 TX73_006010 excinuclease ABC subunit UvrC 0.68 TX73_019940 recombinase RecA — —
Phaeobacter inhibens DSM 17395 0.39 PGA1_c02880 uvrABC system protein C 0.67 PGA1_c15260 protein recA (recombinase A) 0.60 8
Azospirillum brasilense Sp245 0.39 AZOBR_RS08965 excinuclease ABC subunit C 0.68 AZOBR_RS11095 recombinase RecA 0.43 8
Dinoroseobacter shibae DFL-12 0.39 Dshi_0644 excinuclease ABC, C subunit (RefSeq) 0.63 Dshi_1643 recA protein (RefSeq) 0.62 13
Azospirillum sp. SherDot2 0.38 MPMX19_01070 UvrABC system protein C 0.67 MPMX19_00869 Protein RecA — —
Rhodospirillum rubrum S1H 0.38 Rru_A2220 Excinuclease ABC, C subunit (NCBI) 0.67 Rru_A2819 RecA DNA recombination protein (NCBI) — —
Agrobacterium fabrum C58 0.37 Atu1129 excinuclease ABC chain C 0.66 Atu1874 RecA protein 0.47 14
Magnetospirillum magneticum AMB-1 0.36 AMB_RS19240 UvrABC system protein C 0.66 AMB_RS03205 DNA recombination/repair protein RecA low > 64
Sphingomonas koreensis DSMZ 15582 0.36 Ga0059261_3186 Excinuclease ABC subunit C 0.69 Ga0059261_0204 protein RecA 0.54 9
Sinorhizobium meliloti 1021 0.36 SMc00602 excinuclease ABC subunit C 0.67 SMc00760 recombinase A 0.52 10
Rhizobium sp. OAE497 0.35 ABIE40_RS06500 excinuclease ABC subunit UvrC 0.67 ABIE40_RS10320 recombinase RecA — —
Brevundimonas sp. GW460-12-10-14-LB2 0.34 A4249_RS01670 excinuclease ABC subunit UvrC 0.65 A4249_RS12615 recombinase RecA low > 48
Caulobacter crescentus NA1000 Δfur 0.33 CCNA_02975 excinuclease ABC subunit C 0.63 CCNA_01141 RecA protein — —
Caulobacter crescentus NA1000 0.33 CCNA_02975 excinuclease ABC subunit C 0.63 CCNA_01141 RecA protein 0.71 14
Fusobacterium nucleatum SB010 0.27 HUW76_06695 excinuclease ABC subunit UvrC 0.53 HUW76_07355 recombinase RecA low > 35
Parabacteroides merdae CL09T00C40 0.26 HMPREF1078_RS06310 excinuclease ABC subunit UvrC 0.56 HMPREF1078_RS00095 recombinase RecA low > 61
Synechococcus elongatus PCC 7942 0.26 Synpcc7942_1945 uvrC excinuclease ABC subunit C 0.59 Synpcc7942_0348 recA recombinase A — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.26 Echvi_0619 excinuclease ABC, C subunit 0.57 Echvi_0044 protein RecA 0.55 22
Phocaeicola dorei CL03T12C01 0.26 ABI39_RS05415 excinuclease ABC subunit UvrC 0.57 ABI39_RS11930 recombinase RecA low > 72
Phocaeicola vulgatus CL09T03C04 0.26 HMPREF1058_RS11525 excinuclease ABC subunit UvrC 0.57 HMPREF1058_RS15965 recombinase RecA low > 67
Bacteroides thetaiotaomicron VPI-5482 0.25 BT3266 excinuclease ABC subunit C (NCBI ptt file) 0.56 BT4610 RecA (NCBI ptt file) 0.56 6
Pontibacter actiniarum KMM 6156, DSM 19842 0.25 CA264_16350 excinuclease ABC subunit C 0.61 CA264_19695 DNA recombination/repair protein RecA — —
Bacteroides stercoris CC31F 0.25 HMPREF1181_RS02095 excinuclease ABC subunit UvrC 0.57 HMPREF1181_RS11910 recombinase RecA 0.41 55
Bacteroides ovatus ATCC 8483 0.24 BACOVA_01365 excinuclease ABC, C subunit 0.57 BACOVA_05402 RecA protein low > 94
Mucilaginibacter yixingensis YX-36 DSM 26809 0.24 ABZR88_RS04150 excinuclease ABC subunit UvrC 0.58 ABZR88_RS16740 recombinase RecA low > 71
Pedobacter sp. GW460-11-11-14-LB5 0.24 CA265_RS18110 excinuclease ABC subunit C 0.58 CA265_RS00600 recombinase RecA 0.65 13

Not shown: 3 genomes with orthologs for PP_4098 only; 8 genomes with orthologs for PP_1629 only