Conservation of cofitness between PP_4098 and PP_0123 in Pseudomonas putida KT2440

91 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4098 UvrABC system protein C 1.0 PP_0123 DNA polymerase I, 5 0.23 18
Pseudomonas fluorescens FW300-N2C3 0.87 AO356_00350 excinuclease ABC subunit C 0.80 AO356_11465 DNA polymerase I 0.43 22
Pseudomonas simiae WCS417 0.87 PS417_10725 excinuclease ABC subunit C 0.79 PS417_00405 DNA polymerase I 0.32 12
Pseudomonas fluorescens SBW25 0.87 PFLU_RS10770 excinuclease ABC subunit UvrC 0.77 PFLU_RS00395 DNA polymerase I low > 109
Pseudomonas fluorescens SBW25-INTG 0.87 PFLU_RS10770 excinuclease ABC subunit UvrC 0.77 PFLU_RS00395 DNA polymerase I low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.86 Psyr_2896 Excinuclease ABC subunit C 0.79 Psyr_0270 DNA polymerase I low > 86
Pseudomonas syringae pv. syringae B728a 0.86 Psyr_2896 Excinuclease ABC subunit C 0.79 Psyr_0270 DNA polymerase I low > 86
Pseudomonas fluorescens GW456-L13 0.86 PfGW456L13_2886 Excinuclease ABC subunit C 0.76 PfGW456L13_594 DNA polymerase I (EC 2.7.7.7) low > 87
Pseudomonas fluorescens FW300-N1B4 0.86 Pf1N1B4_5618 Excinuclease ABC subunit C 0.79 Pf1N1B4_1875 DNA polymerase I (EC 2.7.7.7) — —
Pseudomonas fluorescens FW300-N2E3 0.86 AO353_21835 excinuclease ABC subunit C 0.80 AO353_10930 DNA polymerase I 0.32 52
Pseudomonas sp. RS175 0.84 PFR28_01411 UvrABC system protein C 0.79 PFR28_04624 DNA polymerase I low > 88
Pseudomonas stutzeri RCH2 0.84 Psest_2259 excinuclease ABC, C subunit 0.77 Psest_4219 DNA polymerase I 0.30 18
Pseudomonas fluorescens FW300-N2E2 0.84 Pf6N2E2_2021 Excinuclease ABC subunit C 0.80 Pf6N2E2_4162 DNA polymerase I (EC 2.7.7.7) 0.39 16
Pseudomonas sp. S08-1 0.82 OH686_00340 excinuclease ABC subunit C 0.77 OH686_12215 DNA polymerase I low > 80
Marinobacter adhaerens HP15 0.56 HP15_1568 excinuclease ABC subunit C 0.56 HP15_293 DNA polymerase I low > 73
Rhodanobacter denitrificans FW104-10B01 0.55 LRK54_RS00380 excinuclease ABC subunit UvrC 0.56 LRK54_RS06840 DNA polymerase I low > 59
Rhodanobacter denitrificans MT42 0.55 LRK55_RS00120 excinuclease ABC subunit UvrC 0.56 LRK55_RS06585 DNA polymerase I low > 63
Rhodanobacter sp. FW510-T8 0.54 OKGIIK_06930 uvrC excinuclease ABC subunit UvrC 0.56 OKGIIK_16785 polA DNA polymerase I low > 52
Dyella japonica UNC79MFTsu3.2 0.53 ABZR86_RS02245 excinuclease ABC subunit UvrC 0.55 ABZR86_RS17015 DNA polymerase I low > 74
Escherichia coli BL21 0.52 ECD_01878 excinuclease UvrABC, endonuclease subunit 0.61 ECD_03749 5 — —
Escherichia fergusonii Becca 0.52 EFB2_02033 UvrABC system protein C 0.60 EFB2_04753 DNA polymerase I — —
Escherichia coli Nissle 1917 0.52 ECOLIN_RS10895 excinuclease ABC subunit UvrC 0.61 ECOLIN_RS22270 DNA polymerase I — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.52 OHPLBJKB_01816 UvrABC system protein C 0.61 OHPLBJKB_04189 DNA polymerase I — —
Escherichia coli BW25113 0.52 b1913 uvrC excinuclease ABC, subunit C; repair of UV damage to DNA (VIMSS) 0.61 b3863 polA DNA polymerase I (NCBI) low > 76
Escherichia coli ECRC62 0.52 BNILDI_15235 uvrC excinuclease ABC subunit UvrC 0.61 BNILDI_05250 polA DNA polymerase I — —
Escherichia coli ECRC101 0.52 MCAODC_19565 uvrC excinuclease ABC subunit UvrC 0.61 MCAODC_04650 polA DNA polymerase I — —
Escherichia coli ECRC99 0.52 KEDOAH_02265 uvrC excinuclease ABC subunit UvrC 0.61 KEDOAH_14000 polA DNA polymerase I — —
Escherichia coli ECRC98 0.52 JDDGAC_00415 uvrC excinuclease ABC subunit UvrC 0.61 JDDGAC_17775 polA DNA polymerase I — —
Escherichia coli ECRC102 0.52 NIAGMN_02225 uvrC excinuclease ABC subunit UvrC 0.61 NIAGMN_11905 polA DNA polymerase I — —
Klebsiella michiganensis M5al 0.52 BWI76_RS18330 excinuclease ABC subunit C 0.59 BWI76_RS00355 DNA polymerase I low > 92
Escherichia coli ECOR38 0.52 HEPCGN_04180 uvrC excinuclease ABC subunit UvrC 0.61 HEPCGN_12785 polA DNA polymerase I — —
Escherichia coli ECRC101 0.52 OKFHMN_25825 uvrC excinuclease ABC subunit UvrC 0.61 OKFHMN_14150 polA DNA polymerase I — —
Escherichia coli ECOR27 0.52 NOLOHH_16445 uvrC excinuclease ABC subunit UvrC 0.61 NOLOHH_06280 polA DNA polymerase I — —
Serratia liquefaciens MT49 0.52 IAI46_09210 excinuclease ABC subunit UvrC 0.60 IAI46_24985 DNA polymerase I 0.75 10
Pantoea sp. MT58 0.51 IAI47_12465 excinuclease ABC subunit UvrC 0.60 IAI47_00430 DNA polymerase I low > 76
Vibrio cholerae E7946 ATCC 55056 0.51 CSW01_06140 excinuclease ABC subunit C 0.61 CSW01_00560 DNA polymerase I low > 62
Erwinia tracheiphila SCR3 0.51 LU632_RS10195 uvrC excinuclease ABC subunit UvrC 0.61 LU632_RS23870 polA DNA polymerase I — —
Shewanella oneidensis MR-1 0.51 SO1861 uvrC excinuclease ABC, C subunit (NCBI ptt file) 0.60 SO4669 polA DNA polymerase I (NCBI ptt file) — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.51 GFF1700 Excinuclease ABC subunit C 0.60 GFF2216 DNA polymerase I (EC 2.7.7.7) low > 78
Shewanella sp. ANA-3 0.51 Shewana3_1609 uvrC excinuclease ABC subunit C (RefSeq) 0.61 Shewana3_4109 DNA polymerase I (RefSeq) — —
Dickeya dianthicola 67-19 0.51 HGI48_RS13795 excinuclease ABC subunit UvrC 0.59 HGI48_RS21260 DNA polymerase I — —
Dickeya dianthicola ME23 0.51 DZA65_RS14285 excinuclease ABC subunit UvrC 0.59 DZA65_RS22235 DNA polymerase I — —
Dickeya dadantii 3937 0.51 DDA3937_RS13700 excinuclease ABC subunit UvrC 0.59 DDA3937_RS00105 DNA polymerase I — —
Shewanella amazonensis SB2B 0.51 Sama_1608 uvrC excinuclease ABC subunit C (RefSeq) 0.61 Sama_0093 DNA-directed DNA polymerase (RefSeq) low > 62
Shewanella loihica PV-4 0.51 Shew_1825 uvrC excinuclease ABC subunit C (RefSeq) 0.60 Shew_3714 DNA polymerase I (RefSeq) low > 60
Pectobacterium carotovorum WPP14 0.51 HER17_RS07715 excinuclease ABC subunit UvrC 0.61 HER17_RS21470 DNA polymerase I — —
Enterobacter asburiae PDN3 0.51 EX28DRAFT_0634 Excinuclease ABC subunit C 0.60 EX28DRAFT_4343 DNA polymerase I (EC 2.7.7.7) — —
Rahnella sp. WP5 0.51 EX31_RS24150 excinuclease ABC subunit UvrC 0.61 EX31_RS15905 DNA polymerase I low > 89
Enterobacter sp. TBS_079 0.51 MPMX20_02838 UvrABC system protein C 0.60 MPMX20_04601 DNA polymerase I low > 85
Dechlorosoma suillum PS 0.50 Dsui_2470 excinuclease ABC, C subunit 0.52 Dsui_0459 DNA polymerase I low > 51
Kangiella aquimarina DSM 16071 0.50 B158DRAFT_1273 Excinuclease ABC subunit C 0.57 B158DRAFT_0499 DNA polymerase I (EC 2.7.7.7) low > 40
Acinetobacter radioresistens SK82 0.49 MPMX26_00228 UvrABC system protein C 0.48 MPMX26_00574 DNA polymerase I 0.46 11
Alteromonas macleodii MIT1002 0.49 MIT1002_02153 Excinuclease ABC subunit C 0.62 MIT1002_00014 DNA polymerase I low > 70
Lysobacter sp. OAE881 0.47 ABIE51_RS12455 excinuclease ABC subunit UvrC 0.52 ABIE51_RS02010 DNA polymerase I low > 62
Xanthomonas campestris pv. campestris strain 8004 0.47 Xcc-8004.2477.1 Excinuclease ABC subunit C 0.52 Xcc-8004.5105.1 DNA polymerase I (EC 2.7.7.7) — —
Herbaspirillum seropedicae SmR1 0.46 HSERO_RS09690 excinuclease ABC subunit C 0.53 HSERO_RS02260 DNA polymerase I 0.39 26
Cupriavidus basilensis FW507-4G11 0.45 RR42_RS14000 excinuclease ABC subunit C 0.52 RR42_RS15050 DNA polymerase I low > 128
Ralstonia sp. UNC404CL21Col 0.45 ABZR87_RS10245 excinuclease ABC subunit UvrC 0.52 ABZR87_RS15680 DNA polymerase I 0.71 7
Ralstonia solanacearum GMI1000 0.44 RS_RS05305 excinuclease ABC subunit UvrC 0.51 RS_RS11195 DNA polymerase I low > 80
Ralstonia solanacearum PSI07 0.44 RPSI07_RS18935 excinuclease ABC subunit UvrC 0.51 RPSI07_RS13480 DNA polymerase I low > 81
Ralstonia solanacearum IBSBF1503 0.44 RALBFv3_RS14525 excinuclease ABC subunit UvrC 0.51 RALBFv3_RS03750 DNA polymerase I low > 76
Ralstonia solanacearum UW163 0.44 UW163_RS11990 excinuclease ABC subunit UvrC 0.51 UW163_RS09920 DNA polymerase I — —
Castellaniella sp019104865 MT123 0.44 ABCV34_RS06980 excinuclease ABC subunit UvrC 0.47 ABCV34_RS02195 DNA polymerase I low > 48
Variovorax sp. OAS795 0.42 ABID97_RS10635 excinuclease ABC subunit UvrC 0.48 ABID97_RS09180 DNA polymerase I low > 91
Variovorax sp. SCN45 0.42 GFF2859 Excinuclease ABC subunit C 0.49 GFF4006 DNA polymerase I (EC 2.7.7.7) low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.41 GFF3847 Excinuclease ABC subunit C 0.45 GFF5584 DNA polymerase I (EC 2.7.7.7) — —
Acidovorax sp. GW101-3H11 0.40 Ac3H11_373 Excinuclease ABC subunit C 0.48 Ac3H11_1648 DNA polymerase I (EC 2.7.7.7) — —
Rhodopseudomonas palustris CGA009 0.39 TX73_006010 excinuclease ABC subunit UvrC 0.36 TX73_024545 DNA polymerase I low > 86
Phaeobacter inhibens DSM 17395 0.39 PGA1_c02880 uvrABC system protein C 0.39 PGA1_c31780 DNA polymerase I 0.51 13
Azospirillum brasilense Sp245 0.39 AZOBR_RS08965 excinuclease ABC subunit C 0.39 AZOBR_RS30685 DNA polymerase 0.40 19
Dinoroseobacter shibae DFL-12 0.39 Dshi_0644 excinuclease ABC, C subunit (RefSeq) 0.40 Dshi_2909 DNA polymerase I (RefSeq) 0.49 21
Azospirillum sp. SherDot2 0.38 MPMX19_01070 UvrABC system protein C 0.38 MPMX19_04869 DNA polymerase I low > 112
Rhodospirillum rubrum S1H 0.38 Rru_A2220 Excinuclease ABC, C subunit (NCBI) 0.36 Rru_A3514 DNA polymerase A (NCBI) — —
Agrobacterium fabrum C58 0.37 Atu1129 excinuclease ABC chain C 0.41 Atu0110 DNA polymerase I — —
Sphingomonas koreensis DSMZ 15582 0.36 Ga0059261_3186 Excinuclease ABC subunit C 0.35 Ga0059261_2244 DNA polymerase I (EC 2.7.7.7) 0.52 12
Magnetospirillum magneticum AMB-1 0.36 AMB_RS19240 UvrABC system protein C 0.39 AMB_RS21305 DNA polymerase I — —
Rhizobium sp. OAE497 0.35 ABIE40_RS06500 excinuclease ABC subunit UvrC 0.31 ABIE40_RS00490 DNA polymerase I — —
Brevundimonas sp. GW460-12-10-14-LB2 0.34 A4249_RS01670 excinuclease ABC subunit UvrC 0.39 A4249_RS13840 DNA polymerase I — —
Caulobacter crescentus NA1000 Δfur 0.33 CCNA_02975 excinuclease ABC subunit C 0.40 CCNA_03577 DNA polymerase I low > 67
Caulobacter crescentus NA1000 0.33 CCNA_02975 excinuclease ABC subunit C 0.40 CCNA_03577 DNA polymerase I 0.36 32
Mycobacterium tuberculosis H37Rv 0.28 Rv1420 Probable excinuclease ABC (subunit C-nuclease) UvrC 0.26 Rv1629 Probable DNA polymerase I PolA — —
Fusobacterium nucleatum SB010 0.27 HUW76_06695 excinuclease ABC subunit UvrC 0.26 HUW76_04385 DNA polymerase I low > 35
Parabacteroides merdae CL09T00C40 0.26 HMPREF1078_RS06310 excinuclease ABC subunit UvrC 0.36 HMPREF1078_RS06335 DNA polymerase I low > 61
Synechococcus elongatus PCC 7942 0.26 Synpcc7942_1945 uvrC excinuclease ABC subunit C 0.31 Synpcc7942_0194 polA DNA polymerase I — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.26 Echvi_0619 excinuclease ABC, C subunit 0.36 Echvi_1032 DNA polymerase I low > 79
Phocaeicola vulgatus CL09T03C04 0.26 HMPREF1058_RS11525 excinuclease ABC subunit UvrC 0.35 HMPREF1058_RS11500 DNA polymerase I low > 67
Bacteroides thetaiotaomicron VPI-5482 0.25 BT3266 excinuclease ABC subunit C (NCBI ptt file) 0.36 BT3260 DNA polymerase I (NCBI ptt file) 0.49 13
Pontibacter actiniarum KMM 6156, DSM 19842 0.25 CA264_16350 excinuclease ABC subunit C 0.35 CA264_16535 DNA polymerase I — —
Bacteroides stercoris CC31F 0.25 HMPREF1181_RS02095 excinuclease ABC subunit UvrC 0.36 HMPREF1181_RS02070 DNA polymerase I low > 56
Bacteroides ovatus ATCC 8483 0.24 BACOVA_01365 excinuclease ABC, C subunit 0.37 BACOVA_01357 DNA-directed DNA polymerase low > 94
Mucilaginibacter yixingensis YX-36 DSM 26809 0.24 ABZR88_RS04150 excinuclease ABC subunit UvrC 0.37 ABZR88_RS20185 DNA polymerase I low > 71
Pedobacter sp. GW460-11-11-14-LB5 0.24 CA265_RS18110 excinuclease ABC subunit C 0.36 CA265_RS19630 DNA polymerase I 0.27 52

Not shown: 4 genomes with orthologs for PP_4098 only; 6 genomes with orthologs for PP_0123 only