Conservation of cofitness between PP_1216 and PP_0002 in Pseudomonas putida KT2440

73 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_1216 Holliday junction ATP-dependent DNA helicase RuvA 1.0 PP_0002 probable chromosome partition protein 0.37 11
Pseudomonas syringae pv. syringae B728a 0.84 Psyr_1409 Holliday junction DNA helicase subunit RuvA 0.91 Psyr_5130 chromosome segregation ATPase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.84 Psyr_1409 Holliday junction DNA helicase subunit RuvA 0.91 Psyr_5130 chromosome segregation ATPase low > 86
Pseudomonas fluorescens FW300-N2E3 0.82 AO353_03585 ATP-dependent DNA helicase RuvA 0.92 AO353_10435 chromosome partitioning protein low > 101
Pseudomonas sp. S08-1 0.82 OH686_19130 Holliday junction DNA helicase RuvA 0.86 OH686_12670 Chromosome (plasmid) partitioning protein ParA — —
Pseudomonas sp. RS175 0.82 PFR28_03413 Holliday junction ATP-dependent DNA helicase RuvA 0.91 PFR28_04585 Chromosome partitioning protein ParA low > 88
Pseudomonas fluorescens GW456-L13 0.81 PfGW456L13_1852 Holliday junction DNA helicase RuvA 0.86 PfGW456L13_673 Chromosome (plasmid) partitioning protein ParA 0.35 67
Pseudomonas fluorescens FW300-N2E2 0.81 Pf6N2E2_5536 Holliday junction DNA helicase RuvA 0.91 Pf6N2E2_4205 Chromosome (plasmid) partitioning protein ParA low > 103
Pseudomonas fluorescens FW300-N1B4 0.81 Pf1N1B4_638 Holliday junction DNA helicase RuvA 0.91 Pf1N1B4_1936 Chromosome (plasmid) partitioning protein ParA — —
Pseudomonas simiae WCS417 0.81 PS417_22450 ATP-dependent DNA helicase RuvA 0.92 PS417_28510 chromosome partitioning protein low > 88
Pseudomonas fluorescens SBW25 0.81 PFLU_RS24090 Holliday junction branch migration protein RuvA 0.91 PFLU_RS30165 ParA family protein 0.71 4
Pseudomonas fluorescens SBW25-INTG 0.81 PFLU_RS24090 Holliday junction branch migration protein RuvA 0.91 PFLU_RS30165 ParA family protein 0.31 32
Pseudomonas fluorescens FW300-N2C3 0.81 AO356_18020 ATP-dependent DNA helicase RuvA 0.91 AO356_11675 chromosome partitioning protein 0.45 7
Pseudomonas stutzeri RCH2 0.80 Psest_1496 Holliday junction DNA helicase, RuvA subunit 0.81 Psest_4363 ATPases involved in chromosome partitioning low > 67
Vibrio cholerae E7946 ATCC 55056 0.57 CSW01_09245 Holliday junction branch migration protein RuvA 0.65 CSW01_14045 ParA family protein low > 62
Shewanella sp. ANA-3 0.56 Shewana3_1956 ruvA Holliday junction DNA helicase RuvA (RefSeq) 0.67 Shewana3_4139 chromosome segregation ATPase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.56 SO2430 ruvA Holliday junction DNA helicase RuvA (NCBI ptt file) 0.67 SO4756 ParA family protein (NCBI ptt file) 0.38 20
Alteromonas macleodii MIT1002 0.55 MIT1002_01332 Holliday junction ATP-dependent DNA helicase RuvA 0.67 MIT1002_04122 Sporulation initiation inhibitor protein soj — —
Shewanella loihica PV-4 0.53 Shew_2076 Holliday junction DNA helicase RuvA (RefSeq) 0.66 Shew_3854 cobyrinic acid a,c-diamide synthase (RefSeq) — —
Shewanella amazonensis SB2B 0.52 Sama_1840 ruvA Holliday junction DNA helicase RuvA (RefSeq) 0.67 Sama_3653 ParA family protein (RefSeq) — —
Kangiella aquimarina DSM 16071 0.52 B158DRAFT_1125 Holliday junction DNA helicase subunit RuvA 0.61 B158DRAFT_0379 ATPases involved in chromosome partitioning low > 40
Marinobacter adhaerens HP15 0.51 HP15_2041 Holliday junction ATP-dependent DNA helicase RuvA 0.66 HP15_3688 chromosome partitioning protein parA — —
Acinetobacter radioresistens SK82 0.45 MPMX26_02185 Holliday junction ATP-dependent DNA helicase RuvA 0.58 MPMX26_01215 Sporulation initiation inhibitor protein Soj 0.47 29
Lysobacter sp. OAE881 0.45 ABIE51_RS05045 Holliday junction branch migration protein RuvA 0.61 ABIE51_RS01735 AAA family ATPase — —
Burkholderia phytofirmans PsJN 0.45 BPHYT_RS16615 holliday junction ATP-dependent DNA helicase RuvA 0.59 BPHYT_RS19430 cobyric acid synthase CobQ — —
Dechlorosoma suillum PS 0.45 Dsui_0485 Holliday junction DNA helicase, RuvA subunit 0.56 Dsui_0848 ATPase involved in chromosome partitioning — —
Variovorax sp. SCN45 0.44 GFF2073 Holliday junction ATP-dependent DNA helicase RuvA (EC 3.6.4.12) 0.59 GFF3339 Chromosome (plasmid) partitioning protein ParA — —
Rhodanobacter denitrificans FW104-10B01 0.44 LRK54_RS04910 Holliday junction branch migration protein RuvA 0.53 LRK54_RS08695 ParA family protein — —
Castellaniella sp019104865 MT123 0.44 ABCV34_RS07980 Holliday junction branch migration protein RuvA 0.60 ABCV34_RS11715 AAA family ATPase — —
Rhodanobacter denitrificans MT42 0.44 LRK55_RS04690 Holliday junction branch migration protein RuvA 0.53 LRK55_RS08460 ParA family protein — —
Variovorax sp. OAS795 0.44 ABID97_RS24920 Holliday junction branch migration protein RuvA 0.59 ABID97_RS02920 ParA family protein — —
Paraburkholderia sabiae LMG 24235 0.43 QEN71_RS26795 Holliday junction branch migration protein RuvA 0.61 QEN71_RS29335 ParA family protein — —
Dyella japonica UNC79MFTsu3.2 0.43 ABZR86_RS10840 Holliday junction branch migration protein RuvA 0.55 ABZR86_RS14870 AAA family ATPase low > 74
Paraburkholderia graminis OAS925 0.43 ABIE53_003494 Holliday junction DNA helicase RuvA 0.60 ABIE53_000262 chromosome partitioning protein 0.30 55
Hydrogenophaga sp. GW460-11-11-14-LB1 0.42 GFF1666 Holliday junction DNA helicase RuvA 0.62 GFF2015 Chromosome (plasmid) partitioning protein ParA — —
Ralstonia solanacearum GMI1000 0.42 RS_RS02490 Holliday junction branch migration protein RuvA 0.63 RS_RS16665 ParA family protein — —
Ralstonia solanacearum PSI07 0.42 RPSI07_RS21550 Holliday junction branch migration protein RuvA 0.63 RPSI07_RS08420 ParA family protein — —
Ralstonia solanacearum UW163 0.42 UW163_RS01915 Holliday junction branch migration protein RuvA 0.63 UW163_RS04755 ParA family protein — —
Ralstonia solanacearum IBSBF1503 0.42 RALBFv3_RS11670 Holliday junction branch migration protein RuvA 0.63 RALBFv3_RS08855 ParA family protein — —
Rhodanobacter sp. FW510-T8 0.42 OKGIIK_01840 ruvA Holliday junction branch migration protein RuvA 0.53 OKGIIK_15460 parA chromosome partitioning protein — —
Ralstonia sp. UNC404CL21Col 0.42 ABZR87_RS07625 Holliday junction branch migration protein RuvA 0.62 ABZR87_RS04115 ParA family protein — —
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS02705 Holliday junction DNA helicase RuvA 0.64 RR42_RS20205 chromosome partitioning protein low > 128
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.1436.1 Holliday junction DNA helicase RuvA 0.61 Xcc-8004.4886.1 Chromosome (plasmid) partitioning protein ParA — —
Paraburkholderia bryophila 376MFSha3.1 0.42 H281DRAFT_04254 Holliday junction DNA helicase subunit RuvA 0.61 H281DRAFT_02387 chromosome segregation ATPase — —
Acidovorax sp. GW101-3H11 0.40 Ac3H11_4683 Holliday junction DNA helicase RuvA 0.57 Ac3H11_4953 Chromosome (plasmid) partitioning protein ParA — —
Herbaspirillum seropedicae SmR1 0.40 HSERO_RS02090 Holliday junction DNA helicase RuvA 0.64 HSERO_RS23945 cobyric acid synthase CobQ low > 78
Pontibacter actiniarum KMM 6156, DSM 19842 0.37 CA264_14545 Holliday junction branch migration protein RuvA 0.51 CA264_04765 chromosome partitioning protein ParA — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.34 Echvi_4082 Holliday junction DNA helicase, RuvA subunit 0.53 Echvi_2398 ATPases involved in chromosome partitioning — —
Parabacteroides merdae CL09T00C40 0.33 HMPREF1078_RS13015 Holliday junction branch migration protein RuvA 0.50 HMPREF1078_RS04440 AAA family ATPase low > 61
Sphingomonas koreensis DSMZ 15582 0.31 Ga0059261_0820 Holliday junction DNA helicase subunit RuvA 0.49 Ga0059261_2207 ATPases involved in chromosome partitioning — —
Bacteroides ovatus ATCC 8483 0.31 BACOVA_00691 Holliday junction DNA helicase RuvA 0.49 BACOVA_04821 CobQ/CobB/MinD/ParA nucleotide binding domain protein — —
Azospirillum brasilense Sp245 0.30 AZOBR_RS09045 Holliday junction DNA helicase RuvA 0.49 AZOBR_RS01820 chromosome partitioning protein ParA — —
Azospirillum sp. SherDot2 0.30 MPMX19_00697 Holliday junction ATP-dependent DNA helicase RuvA 0.50 MPMX19_02571 Chromosome partitioning protein ParA — —
Bacteroides stercoris CC31F 0.30 HMPREF1181_RS07915 Holliday junction branch migration protein RuvA 0.50 HMPREF1181_RS09185 ParA family protein — —
Rhodopseudomonas palustris CGA009 0.30 TX73_005655 Holliday junction branch migration protein RuvA 0.46 TX73_001520 ParA family protein — —
Magnetospirillum magneticum AMB-1 0.30 AMB_RS16255 Holliday junction branch migration protein RuvA 0.52 AMB_RS00020 ParA family protein — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.29 ABZR88_RS18310 Holliday junction branch migration protein RuvA 0.48 ABZR88_RS02035 ParA family protein — —
Bacteroides thetaiotaomicron VPI-5482 0.29 BT1978 Holliday junction DNA helicase ruvA (NCBI ptt file) 0.48 BT4002 ATPase, ParA family (NCBI ptt file) — —
Bosea sp. OAE506 0.29 ABIE41_RS09475 Holliday junction branch migration protein RuvA 0.48 ABIE41_RS04695 ParA family protein — —
Rhodospirillum rubrum S1H 0.28 Rru_A1088 DNA recombination protein RuvA (NCBI) 0.49 Rru_A3627 Cobyrinic acid a,c-diamide synthase (NCBI) — —
Agrobacterium fabrum C58 0.28 Atu3723 Holliday junction DNA helicase RuvA 0.47 Atu2829 Chromosome partitioning protein — —
Pedobacter sp. GW460-11-11-14-LB5 0.28 CA265_RS18995 Holliday junction branch migration protein RuvA 0.50 CA265_RS15685 ParA family protein — —
Bifidobacterium breve UCC2003 0.27 BBR_RS15655 Holliday junction branch migration protein RuvA 0.39 BBR_RS20465 chromosome partitioning protein low > 34
Phocaeicola dorei CL03T12C01 0.27 ABI39_RS08200 Holliday junction branch migration protein RuvA 0.53 ABI39_RS09730 ParA family protein — —
Rhizobium sp. OAE497 0.27 ABIE40_RS15745 Holliday junction branch migration protein RuvA 0.45 ABIE40_RS19205 ParA family protein — —
Brevundimonas sp. GW460-12-10-14-LB2 0.27 A4249_RS15860 Holliday junction branch migration protein RuvA 0.49 A4249_RS13715 ParA family protein — —
Dinoroseobacter shibae DFL-12 0.27 Dshi_1104 Holliday junction DNA helicase RuvA (RefSeq) 0.44 Dshi_3457 Cobyrinic acid ac-diamide synthase (RefSeq) — —
Desulfovibrio vulgaris Hildenborough JW710 0.26 DVU2256 ruvA Holliday junction DNA helicase RuvA (TIGR) 0.45 DVU3358 parA ParA family protein (TIGR) low > 55
Phocaeicola vulgatus CL09T03C04 0.26 HMPREF1058_RS00595 Holliday junction branch migration protein RuvA 0.53 HMPREF1058_RS14080 ParA family protein — —
Sinorhizobium meliloti 1021 0.26 SMc03966 Holliday junction DNA helicase RuvA 0.44 SMc02800 chromosome partitioning protein ParA — —
Desulfovibrio vulgaris Miyazaki F 0.25 DvMF_3204 Holliday junction DNA helicase RuvA (RefSeq) 0.46 DvMF_2047 Cobyrinic acid ac-diamide synthase (RefSeq) low > 51
Phaeobacter inhibens DSM 17395 0.24 PGA1_c05860 holliday junction ATP-dependent DNA helicase RuvA 0.44 PGA1_c35080 chromosome partitioning protein ParA 0.31 30
Caulobacter crescentus NA1000 0.24 CCNA_03345 Holliday junction DNA helicase RuvA 0.50 CCNA_03869 chromosome partitioning protein ParA — —
Caulobacter crescentus NA1000 Δfur 0.24 CCNA_03345 Holliday junction DNA helicase RuvA 0.50 CCNA_03869 chromosome partitioning protein ParA — —

Not shown: 28 genomes with orthologs for PP_1216 only; 0 genomes with orthologs for PP_0002 only