| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli ECRC100 | 1.0 | OKFHMN_14560 | rffG | dTDP-glucose 4,6-dehydratase | 1.0 | OKFHMN_17755 | tldD | metalloprotease TldD | 0.95 | 11 |
| Escherichia coli ECRC102 | 1.00 | NIAGMN_12315 | rffG | dTDP-glucose 4,6-dehydratase | 1.00 | NIAGMN_15515 | tldD | metalloprotease TldD | — | — |
| Escherichia coli ECRC98 | 1.00 | JDDGAC_18185 | rffG | dTDP-glucose 4,6-dehydratase | 1.00 | JDDGAC_21380 | tldD | metalloprotease TldD | low | > 86 |
| Escherichia coli ECRC99 | 1.00 | KEDOAH_13590 | rffG | dTDP-glucose 4,6-dehydratase | 1.00 | KEDOAH_10395 | tldD | metalloprotease TldD | — | — |
| Escherichia coli ECRC101 | 1.00 | MCAODC_05065 | rffG | dTDP-glucose 4,6-dehydratase | 1.00 | MCAODC_08275 | tldD | metalloprotease TldD | low | > 87 |
| Escherichia coli ECOR27 | 0.99 | NOLOHH_06695 | rffG | dTDP-glucose 4,6-dehydratase | 0.99 | NOLOHH_09555 | tldD | metalloprotease TldD | low | > 75 |
| Escherichia coli BW25113 | 0.99 | b3788 | rffG | dTDP-glucose 4,6-dehydratase (NCBI) | 0.99 | b3244 | tldD | predicted peptidase (NCBI) | low | > 76 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.99 | OHPLBJKB_04266 | | dTDP-glucose 4,6-dehydratase 2 | 0.99 | OHPLBJKB_00460 | | Metalloprotease TldD | low | > 73 |
| Escherichia coli BL21 | 0.99 | ECD_03666 | | dTDP-glucose 4,6-dehydratase | 0.99 | ECD_03104 | | putative peptidase | low | > 61 |
| Escherichia coli ECRC62 | 0.98 | BNILDI_04830 | rffG | dTDP-glucose 4,6-dehydratase | 0.99 | BNILDI_01980 | tldD | metalloprotease TldD | low | > 75 |
| Escherichia coli ECOR38 | 0.98 | HEPCGN_13270 | rffG | dTDP-glucose 4,6-dehydratase | 0.99 | HEPCGN_16620 | tldD | metalloprotease TldD | low | > 87 |
| Escherichia fergusonii Becca | 0.98 | EFB2_04851 | | dTDP-glucose 4,6-dehydratase 2 | 0.99 | EFB2_00586 | | Metalloprotease TldD | low | > 86 |
| Escherichia coli Nissle 1917 | 0.98 | ECOLIN_RS21745 | | dTDP-glucose 4,6-dehydratase | 0.99 | ECOLIN_RS18595 | | metalloprotease TldD | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.90 | GFF2885 | | dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) | 0.92 | GFF2140 | | TldD protein, part of TldE/TldD proteolytic complex | low | > 78 |
| Pectobacterium carotovorum WPP14 | 0.84 | HER17_RS01165 | | dTDP-glucose 4,6-dehydratase | 0.81 | HER17_RS20140 | | metalloprotease TldD | — | — |
| Serratia liquefaciens MT49 | 0.84 | IAI46_00610 | | dTDP-glucose 4,6-dehydratase | 0.84 | IAI46_22685 | | metalloprotease TldD | low | > 86 |
| Dickeya dadantii 3937 | 0.80 | DDA3937_RS06735 | | dTDP-glucose 4,6-dehydratase | 0.83 | DDA3937_RS01460 | | metalloprotease TldD | low | > 74 |
| Dickeya dianthicola 67-19 | 0.80 | HGI48_RS06755 | | dTDP-glucose 4,6-dehydratase | 0.82 | HGI48_RS01380 | | metalloprotease TldD | low | > 71 |
| Pantoea sp. MT58 | 0.80 | IAI47_18500 | | dTDP-glucose 4,6-dehydratase | 0.84 | IAI47_02465 | | metalloprotease TldD | — | — |
| Dickeya dianthicola ME23 | 0.80 | DZA65_RS07110 | | dTDP-glucose 4,6-dehydratase | 0.82 | DZA65_RS01440 | | metalloprotease TldD | low | > 75 |
| Rahnella sp. WP5 | 0.79 | EX31_RS11515 | | dTDP-glucose 4,6-dehydratase | 0.81 | EX31_RS12265 | | metalloprotease TldD | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.77 | AO353_11885 | | dTDP-glucose 4,6-dehydratase | 0.62 | AO353_05215 | | protease TldD | — | — |
| Castellaniella sp019104865 MT123 | 0.77 | ABCV34_RS02410 | | dTDP-glucose 4,6-dehydratase | 0.57 | ABCV34_RS02590 | | metalloprotease TldD | — | — |
| Shewanella loihica PV-4 | 0.76 | Shew_1401 | | dTDP-glucose 4,6 dehydratase (RefSeq) | 0.63 | Shew_0410 | | peptidase U62, modulator of DNA gyrase (RefSeq) | low | > 60 |
| Klebsiella michiganensis M5al | 0.76 | BWI76_RS19065 | | dTDP-glucose 4,6-dehydratase | 0.89 | BWI76_RS25470 | | metalloprotease TldD | low | > 92 |
| Pseudomonas fluorescens FW300-N2C3 | 0.76 | AO356_10040 | | dTDP-glucose 4,6-dehydratase | 0.61 | AO356_07095 | | protease TldD | — | — |
| Pseudomonas sp. RS175 | 0.75 | PFR28_04894 | | dTDP-glucose 4,6-dehydratase 2 | 0.61 | PFR28_00161 | | Metalloprotease TldD | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.75 | Pf6N2E2_3878 | | dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) | 0.61 | Pf6N2E2_3280 | | TldD protein, part of TldE/TldD proteolytic complex | — | — |
| Pseudomonas stutzeri RCH2 | 0.75 | Psest_4262 | | dTDP-glucose 4,6-dehydratase | 0.61 | Psest_3320 | | Predicted Zn-dependent proteases and their inactivated homologs | — | — |
| Pseudomonas simiae WCS417 | 0.75 | PS417_01330 | | dTDP-glucose 4,6-dehydratase | 0.61 | PS417_04285 | | protease TldD | — | — |
| Alteromonas macleodii MIT1002 | 0.75 | MIT1002_03557 | | dTDP-glucose 4,6-dehydratase | 0.65 | MIT1002_00227 | | protease TldD | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.75 | PFLU_RS01425 | | dTDP-glucose 4,6-dehydratase | 0.62 | PFLU_RS04340 | | metalloprotease TldD | — | — |
| Pseudomonas fluorescens SBW25 | 0.75 | PFLU_RS01425 | | dTDP-glucose 4,6-dehydratase | 0.62 | PFLU_RS04340 | | metalloprotease TldD | — | — |
| Pseudomonas sp. S08-1 | 0.74 | OH686_14380 | | dTDP-glucose 4,6-dehydratase | 0.61 | OH686_08580 | | TldD protein, part of TldE/TldD proteolytic complex | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.74 | Psyr_4935 | | dTDP-glucose 4,6-dehydratase | 0.63 | Psyr_4156 | | microcin-processing peptidase 2, Unknown type peptidase, MEROPS family U62 | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.74 | Psyr_4935 | | dTDP-glucose 4,6-dehydratase | 0.63 | Psyr_4156 | | microcin-processing peptidase 2, Unknown type peptidase, MEROPS family U62 | low | > 86 |
| Shewanella oneidensis MR-1 | 0.73 | SO3188 | rfbB | dTDP-glucose 4,6-dehydratase (NCBI ptt file) | 0.60 | SO4091 | tldD | tldD protein (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.73 | Shewana3_1379 | | dTDP-glucose 4,6 dehydratase (RefSeq) | 0.63 | Shewana3_3641 | | microcin-processing peptidase 2 (RefSeq) | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.72 | Pf1N1B4_343 | | dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) | 0.61 | Pf1N1B4_1092 | | TldD protein, part of TldE/TldD proteolytic complex | low | > 87 |
| Pseudomonas fluorescens GW456-L13 | 0.72 | PfGW456L13_2200 | | dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) | 0.61 | PfGW456L13_5026 | | TldD protein, part of TldE/TldD proteolytic complex | — | — |
| Enterobacter asburiae PDN3 | 0.72 | EX28DRAFT_0515 | | dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) | 0.90 | EX28DRAFT_3295 | | Predicted Zn-dependent proteases and their inactivated homologs | — | — |
| Enterobacter sp. TBS_079 | 0.71 | MPMX20_03013 | | dTDP-glucose 4,6-dehydratase | 0.90 | MPMX20_04151 | | Metalloprotease TldD | low | > 85 |
| Azospirillum sp. SherDot2 | 0.69 | MPMX19_06725 | | dTDP-glucose 4,6-dehydratase 2 | 0.48 | MPMX19_00882 | | Metalloprotease TldD | — | — |
| Erwinia tracheiphila SCR3 | 0.68 | LU632_RS08850 | rfbB | dTDP-glucose 4,6-dehydratase | 0.81 | LU632_RS21420 | tldD | metalloprotease TldD | low | > 74 |
| Rhodospirillum rubrum S1H | 0.67 | Rru_B0050 | | dTDP-glucose 4,6-dehydratase (NCBI) | 0.50 | Rru_A0567 | | Peptidase U62, modulator of DNA gyrase (NCBI) | low | > 58 |
| Shewanella amazonensis SB2B | 0.65 | Sama_2242 | | dTDP-glucose 4,6-dehydratase (RefSeq) | 0.60 | Sama_0474 | | TldD protein (RefSeq) | — | — |
| Ralstonia solanacearum PSI07 | 0.64 | RPSI07_RS20615 | | dTDP-glucose 4,6-dehydratase | 0.58 | RPSI07_RS11850 | | metalloprotease TldD | — | — |
| Agrobacterium fabrum C58 | 0.64 | Atu4617 | | dTDP-D-glucose-4,6-dehydratase | 0.49 | Atu0765 | | TldD | low | > 89 |
| Ralstonia solanacearum GMI1000 | 0.63 | RS_RS03430 | | dTDP-glucose 4,6-dehydratase | 0.58 | RS_RS13315 | | metalloprotease TldD | — | — |
| Synechococcus elongatus PCC 7942 | 0.63 | Synpcc7942_2100 | rfbB | dTDP-glucose 4,6-dehydratase | 0.24 | Synpcc7942_1127 | tldD | microcin-processing peptidase 2. Unknown type peptidase. MEROPS family U62 | low | > 38 |
| Ralstonia solanacearum IBSBF1503 | 0.63 | RALBFv3_RS12645 | | dTDP-glucose 4,6-dehydratase | 0.58 | RALBFv3_RS05455 | | metalloprotease TldD | — | — |
| Ralstonia solanacearum UW163 | 0.63 | UW163_RS00920 | | dTDP-glucose 4,6-dehydratase | 0.58 | UW163_RS08170 | | metalloprotease TldD | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.63 | H281DRAFT_04822 | | dTDP-glucose 4,6-dehydratase | 0.56 | H281DRAFT_04688 | | microcin-processing peptidase 2. Unknown type peptidase. MEROPS family U62 | — | — |
| Burkholderia phytofirmans PsJN | 0.62 | BPHYT_RS04265 | | dTDP-glucose 4,6-dehydratase | 0.56 | BPHYT_RS03540 | | peptidase C69 | — | — |
| Ralstonia sp. UNC404CL21Col | 0.62 | ABZR87_RS08645 | | dTDP-glucose 4,6-dehydratase | 0.58 | ABZR87_RS01105 | | metalloprotease TldD | low | > 80 |
| Rhizobium sp. OAE497 | 0.62 | ABIE40_RS08670 | | dTDP-glucose 4,6-dehydratase | 0.50 | ABIE40_RS04050 | | metalloprotease TldD | low | > 107 |
| Paraburkholderia graminis OAS925 | 0.62 | ABIE53_001137 | | dTDP-glucose 4,6-dehydratase | 0.56 | ABIE53_000851 | | TldD protein | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.61 | QEN71_RS25755 | | dTDP-glucose 4,6-dehydratase | 0.55 | QEN71_RS26555 | | metalloprotease TldD | — | — |
| Azospirillum brasilense Sp245 | 0.61 | AZOBR_RS33415 | | dTDP-glucose 4 6-dehydratase | 0.48 | AZOBR_RS10600 | | peptidase C69 | low | > 97 |
| Pseudomonas putida KT2440 | 0.61 | PP_1785 | | dTDP-glucose 4,6-dehydratase 2 | 0.63 | PP_0940 | | putative protease involved in Microcin B17 maturation and in sensitivity to the DNA gyrase inhibitor LetD | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.61 | RR42_RS15840 | | spore coat protein | 0.57 | RR42_RS05875 | | protease TldD | — | — |
| Phaeobacter inhibens DSM 17395 | 0.61 | PGA1_65p00240 | | dTDP-glucose 4,6-dehydratase RffG | 0.45 | PGA1_c06240 | | protein TldD | low | > 62 |
| Dinoroseobacter shibae DFL-12 | 0.60 | Dshi_4115 | | dTDP-glucose 4,6-dehydratase (RefSeq) | 0.45 | Dshi_1139 | | peptidase U62 modulator of DNA gyrase (RefSeq) | low | > 64 |
| Caulobacter crescentus NA1000 Δfur | 0.60 | CCNA_03744 | | dTDP-glucose 4,6-dehydratase | 0.47 | CCNA_03522 | | Zn-dependent protease TldD | low | > 67 |
| Caulobacter crescentus NA1000 | 0.60 | CCNA_03744 | | dTDP-glucose 4,6-dehydratase | 0.47 | CCNA_03522 | | Zn-dependent protease TldD | low | > 66 |
| Variovorax sp. OAS795 | 0.59 | ABID97_RS05660 | | dTDP-glucose 4,6-dehydratase | 0.55 | ABID97_RS06335 | | metalloprotease TldD | — | — |
| Variovorax sp. SCN45 | 0.58 | GFF6882 | | dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) | 0.55 | GFF4449 | | TldD protein, part of TldE/TldD proteolytic complex | — | — |
| Acidovorax sp. GW101-3H11 | 0.58 | Ac3H11_1880 | | dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) | 0.56 | Ac3H11_4036 | | TldD protein, part of TldE/TldD proteolytic complex | — | — |
| Herbaspirillum seropedicae SmR1 | 0.58 | HSERO_RS22050 | | spore coat protein | 0.56 | HSERO_RS07155 | | peptidase C69 | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.57 | ABZR86_RS18735 | | dTDP-glucose 4,6-dehydratase | 0.60 | ABZR86_RS21715 | | metalloprotease TldD | low | > 74 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.57 | Xcc-8004.4486.1 | | dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) | 0.59 | Xcc-8004.1883.1 | | TldD protein, part of TldE/TldD proteolytic complex | low | > 74 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.57 | GFF1837 | | dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) | 0.56 | GFF580 | | TldD protein, part of TldE/TldD proteolytic complex | — | — |
| Dechlorosoma suillum PS | 0.57 | Dsui_1948 | | dTDP-glucose 4,6-dehydratase | 0.55 | Dsui_3401 | | putative Zn-dependent protease-like protein | — | — |
| Rhodanobacter sp. FW510-T8 | 0.57 | OKGIIK_01175 | rfbB | dTDP-glucose 4,6-dehydratase | 0.59 | OKGIIK_10280 | tldD | metalloprotease TldD | low | > 52 |
| Rhodanobacter denitrificans FW104-10B01 | 0.57 | LRK54_RS05665 | | dTDP-glucose 4,6-dehydratase | 0.57 | LRK54_RS03395 | | metalloprotease TldD | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.56 | LRK55_RS05420 | | dTDP-glucose 4,6-dehydratase | 0.57 | LRK55_RS03145 | | metalloprotease TldD | low | > 63 |
| Sinorhizobium meliloti 1021 | 0.56 | SM_b21326 | | dTDP-D-glucose 4,6-dehydratase | 0.48 | SMc00960 | | hypothetical protein | low | > 103 |
| Lysobacter sp. OAE881 | 0.56 | ABIE51_RS15620 | | dTDP-glucose 4,6-dehydratase | 0.59 | ABIE51_RS06795 | | metalloprotease TldD | low | > 62 |
| Sphingomonas koreensis DSMZ 15582 | 0.54 | Ga0059261_3099 | | dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) | 0.49 | Ga0059261_2252 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.61 | 68 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.52 | BT0466 | | dTDP-glucose 4,6-dehydratase (NCBI ptt file) | 0.37 | BT3648 | | putative modulator of DNA gyrase (NCBI ptt file) | low | > 81 |
| Magnetospirillum magneticum AMB-1 | 0.51 | AMB_RS00295 | | dTDP-glucose 4,6-dehydratase | 0.49 | AMB_RS21030 | | metalloprotease TldD | — | — |
| Bacteroides stercoris CC31F | 0.48 | HMPREF1181_RS08020 | | dTDP-glucose 4,6-dehydratase | 0.34 | HMPREF1181_RS03165 | | TldD/PmbA family protein | — | — |
| Parabacteroides merdae CL09T00C40 | 0.48 | HMPREF1078_RS00705 | | dTDP-glucose 4,6-dehydratase | 0.37 | HMPREF1078_RS03620 | | TldD/PmbA family protein | — | — |
| Mycobacterium tuberculosis H37Rv | 0.39 | Rv3464 | | dTDP-glucose 4,6-dehydratase RmlB | 0.07 | Rv2315c | | Conserved protein | — | — |
| Rhodopseudomonas palustris CGA009 | 0.22 | TX73_020345 | | GDP-mannose 4,6-dehydratase | 0.46 | TX73_004255 | | metalloprotease TldD | low | > 86 |
Not shown: 14 genomes with orthologs for OKFHMN_14560 only; 5 genomes with orthologs for OKFHMN_17755 only