| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pantoea sp. MT58 | 1.0 | IAI47_12945 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 1.0 | IAI47_17715 | | acetate--CoA ligase | 0.52 | 18 |
| Rahnella sp. WP5 | 0.93 | EX31_RS18560 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.85 | EX31_RS09040 | | acetate--CoA ligase | 0.47 | 59 |
| Erwinia tracheiphila SCR3 | 0.92 | LU632_RS09705 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.87 | LU632_RS23305 | acs | acetate--CoA ligase | low | > 74 |
| Serratia liquefaciens MT49 | 0.92 | IAI46_08515 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.84 | IAI46_01405 | | acetate--CoA ligase | low | > 86 |
| Enterobacter sp. TBS_079 | 0.92 | MPMX20_01544 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.86 | MPMX20_00291 | | Acetyl-coenzyme A synthetase | low | > 85 |
| Enterobacter asburiae PDN3 | 0.92 | EX28DRAFT_2050 | | ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) | 0.86 | EX28DRAFT_4232 | | acetate--CoA ligase | low | > 76 |
| Escherichia coli ECRC101 | 0.92 | OKFHMN_05785 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.87 | OKFHMN_12830 | acs | acetate--CoA ligase | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.92 | OHPLBJKB_02786 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.87 | OHPLBJKB_03971 | | Acetyl-coenzyme A synthetase | low | > 73 |
| Escherichia coli ECRC62 | 0.92 | BNILDI_20435 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.87 | BNILDI_06445 | acs | acetate--CoA ligase | — | — |
| Escherichia coli ECRC102 | 0.92 | NIAGMN_03825 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.87 | NIAGMN_10675 | acs | acetate--CoA ligase | — | — |
| Escherichia coli ECRC98 | 0.92 | JDDGAC_09420 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.87 | JDDGAC_16465 | acs | acetate--CoA ligase | — | — |
| Escherichia coli ECRC101 | 0.92 | MCAODC_25000 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.87 | MCAODC_03340 | acs | acetate--CoA ligase | — | — |
| Escherichia fergusonii Becca | 0.92 | EFB2_03179 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.87 | EFB2_04520 | | Acetyl-coenzyme A synthetase | low | > 86 |
| Escherichia coli Nissle 1917 | 0.92 | ECOLIN_RS04695 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.87 | ECOLIN_RS23550 | | acetate--CoA ligase | low | > 52 |
| Escherichia coli BW25113 | 0.92 | b0882 | clpA | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity (NCBI) | 0.87 | b4069 | acs | acetyl-coenzyme A synthetase (NCBI) | low | > 76 |
| Escherichia coli ECOR38 | 0.92 | HEPCGN_22900 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.87 | HEPCGN_11455 | acs | acetate--CoA ligase | low | > 85 |
| Escherichia coli ECOR27 | 0.92 | NOLOHH_22180 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.87 | NOLOHH_05080 | acs | acetate--CoA ligase | low | > 57 |
| Escherichia coli ECRC99 | 0.92 | KEDOAH_22125 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.87 | KEDOAH_15320 | acs | acetate--CoA ligase | — | — |
| Escherichia coli BL21 | 0.92 | ECD_00887 | | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity | 0.87 | ECD_03941 | | acetyl-CoA synthetase | low | > 60 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.92 | GFF4901 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.86 | GFF1452 | | Acetyl-coenzyme A synthetase (EC 6.2.1.1) | low | > 78 |
| Pectobacterium carotovorum WPP14 | 0.91 | HER17_RS12400 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.84 | HER17_RS17630 | | acetate--CoA ligase | low | > 75 |
| Dickeya dadantii 3937 | 0.91 | DDA3937_RS09560 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.84 | DDA3937_RS03480 | | acetate--CoA ligase | low | > 74 |
| Klebsiella michiganensis M5al | 0.91 | BWI76_RS09615 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.87 | BWI76_RS02095 | | acetyl-coenzyme A synthetase | low | > 92 |
| Dickeya dianthicola 67-19 | 0.91 | HGI48_RS09575 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.83 | HGI48_RS03580 | | acetate--CoA ligase | low | > 71 |
| Dickeya dianthicola ME23 | 0.91 | DZA65_RS09885 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.83 | DZA65_RS03695 | | acetate--CoA ligase | low | > 75 |
| Vibrio cholerae E7946 ATCC 55056 | 0.77 | CSW01_05805 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.77 | CSW01_01520 | | acetyl-coenzyme A synthetase | low | > 62 |
| Shewanella sp. ANA-3 | 0.71 | Shewana3_1753 | | ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) | 0.70 | Shewana3_2523 | | acetyl-CoA synthetase (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.70 | SO2626 | clpA | ATP-dependent Clp protease, ATP-binding subunit ClpA (NCBI ptt file) | 0.70 | SO2743 | acs | acetyl-coenzyme A synthetase (NCBI ptt file) | low | > 76 |
| Shewanella amazonensis SB2B | 0.70 | Sama_2056 | | ATP-dependent Clp protease, ATP-binding subunit ClpA (RefSeq) | 0.70 | Sama_2079 | | acetyl-CoA synthetase (RefSeq) | low | > 62 |
| Shewanella loihica PV-4 | 0.70 | Shew_1566 | | ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) | 0.69 | Shew_1533 | | acetyl-CoA synthetase (RefSeq) | low | > 60 |
| Alteromonas macleodii MIT1002 | 0.70 | MIT1002_01834 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.65 | MIT1002_03516 | | Acetyl-coenzyme A synthetase | low | > 70 |
| Marinobacter adhaerens HP15 | 0.66 | HP15_2080 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.70 | HP15_811 | | acetyl-CoA synthetase | low | > 73 |
| Pseudomonas simiae WCS417 | 0.66 | PS417_16510 | | Clp protease ClpX | 0.71 | PS417_21750 | | acetyl-CoA synthetase | low | > 88 |
| Pseudomonas sp. RS175 | 0.66 | PFR28_02613 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.70 | PFR28_03289 | | Acetyl-coenzyme A synthetase | low | > 88 |
| Pseudomonas fluorescens SBW25 | 0.65 | PFLU_RS18550 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.70 | PFLU_RS23355 | | acetate--CoA ligase | low | > 109 |
| Pseudomonas sp. S08-1 | 0.65 | OH686_00235 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.71 | OH686_21250 | | acetate--CoA ligase | low | > 80 |
| Pseudomonas fluorescens SBW25-INTG | 0.65 | PFLU_RS18550 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.70 | PFLU_RS23355 | | acetate--CoA ligase | low | > 109 |
| Pseudomonas fluorescens FW300-N1B4 | 0.65 | Pf1N1B4_4055 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.70 | Pf1N1B4_3430 | | Acetyl-coenzyme A synthetase (EC 6.2.1.1) | low | > 87 |
| Pseudomonas putida KT2440 | 0.65 | PP_4008 | | ATP-dependent serine protease | 0.70 | PP_4487 | | acetyl-CoA synthetase | low | > 96 |
| Pseudomonas fluorescens GW456-L13 | 0.65 | PfGW456L13_2646 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.70 | PfGW456L13_1963 | | Acetyl-coenzyme A synthetase (EC 6.2.1.1) | low | > 87 |
| Pseudomonas fluorescens FW300-N2C3 | 0.65 | AO356_22150 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.70 | AO356_18695 | | Acetyl-coenzyme A synthetase (EC 6.2.1.1) (from data) | low | > 104 |
| Pseudomonas syringae pv. syringae B728a | 0.64 | Psyr_3183 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.70 | Psyr_3572 | | acetyl-coenzyme A synthetase | 0.30 | 57 |
| Kangiella aquimarina DSM 16071 | 0.64 | B158DRAFT_1505 | | ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) | 0.60 | B158DRAFT_0063 | | acetate--CoA ligase | low | > 40 |
| Pseudomonas fluorescens FW300-N2E2 | 0.64 | Pf6N2E2_292 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.70 | Pf6N2E2_5659 | | Acetyl-coenzyme A synthetase (EC 6.2.1.1) | 0.31 | 101 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.64 | Psyr_3183 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.70 | Psyr_3572 | | acetyl-coenzyme A synthetase | low | > 86 |
| Pseudomonas fluorescens FW300-N2E3 | 0.64 | AO353_27675 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.70 | AO353_03060 | | Acetyl-coenzyme A synthetase (EC 6.2.1.1) (from data) | 0.43 | 21 |
| Pseudomonas stutzeri RCH2 | 0.64 | Psest_2027 | | ATP-dependent Clp protease ATP-binding subunit clpA | 0.65 | Psest_2657 | | acetate--CoA ligase | low | > 67 |
| Herbaspirillum seropedicae SmR1 | 0.63 | HSERO_RS07030 | | ATP-dependent Clp protease ATP-binding protein | 0.46 | HSERO_RS07770 | | acetyl-CoA synthetase | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.63 | ABZR86_RS02200 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.67 | ABZR86_RS15200 | | acetate--CoA ligase | low | > 74 |
| Lysobacter sp. OAE881 | 0.63 | ABIE51_RS11490 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.63 | ABIE51_RS01660 | | acetate--CoA ligase | low | > 62 |
| Rhodanobacter denitrificans FW104-10B01 | 0.62 | LRK54_RS00420 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.66 | LRK54_RS08420 | | acetate--CoA ligase | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.62 | LRK55_RS00160 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.66 | LRK55_RS08185 | | acetate--CoA ligase | low | > 63 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.62 | Xcc-8004.2754.1 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.63 | Xcc-8004.5157.1 | | Acetyl-coenzyme A synthetase (EC 6.2.1.1) | low | > 74 |
| Ralstonia solanacearum GMI1000 | 0.62 | RS_RS12370 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.47 | RS_RS09815 | | acetyl-coenzyme A synthetase | — | — |
| Rhodanobacter sp. FW510-T8 | 0.62 | OKGIIK_06890 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.65 | OKGIIK_15190 | acs | acetate--CoA ligase | low | > 52 |
| Ralstonia sp. UNC404CL21Col | 0.62 | ABZR87_RS00435 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.47 | ABZR87_RS14360 | | acetate--CoA ligase | low | > 80 |
| Dechlorosoma suillum PS | 0.62 | Dsui_0009 | | ATP-dependent Clp protease ATP-binding subunit clpA | 0.46 | Dsui_2003 | | acetate--CoA ligase | low | > 51 |
| Ralstonia solanacearum UW163 | 0.61 | UW163_RS08860 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.47 | UW163_RS11280 | | acetate--CoA ligase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.61 | RALBFv3_RS04810 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.47 | RALBFv3_RS02445 | | acetate--CoA ligase | — | — |
| Ralstonia solanacearum PSI07 | 0.61 | RPSI07_RS12575 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.47 | RPSI07_RS14880 | | acetate--CoA ligase | low | > 81 |
| Cupriavidus basilensis FW507-4G11 | 0.61 | RR42_RS17105 | | Clp protease ClpX | 0.49 | RR42_RS13880 | | AMP-dependent synthetase | low | > 128 |
| Variovorax sp. SCN45 | 0.61 | GFF341 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.46 | GFF475 | | Acetyl-CoA synthetase (EC 6.2.1.1) | low | > 127 |
| Paraburkholderia sabiae LMG 24235 | 0.61 | QEN71_RS03005 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.47 | QEN71_RS23765 | | acetate--CoA ligase | low | > 153 |
| Variovorax sp. OAS795 | 0.61 | ABID97_RS16910 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.46 | ABID97_RS27430 | | acetate--CoA ligase | low | > 91 |
| Burkholderia phytofirmans PsJN | 0.61 | BPHYT_RS15710 | | ATP-dependent Clp protease ATP-binding protein | 0.47 | BPHYT_RS07000 | | acetyl-CoA synthetase | low | > 109 |
| Acidovorax sp. GW101-3H11 | 0.61 | Ac3H11_2456 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.47 | Ac3H11_951 | | Acetyl-coenzyme A synthetase (EC 6.2.1.1) | low | > 79 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.61 | H281DRAFT_04082 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.47 | H281DRAFT_04953 | | acetyl-coenzyme A synthetase | low | > 103 |
| Castellaniella sp019104865 MT123 | 0.60 | ABCV34_RS05305 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.48 | ABCV34_RS00680 | | acetate--CoA ligase | low | > 48 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.60 | GFF4521 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.47 | GFF4107 | | Acetyl-coenzyme A synthetase (EC 6.2.1.1) | low | > 90 |
| Magnetospirillum magneticum AMB-1 | 0.60 | AMB_RS05705 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.69 | AMB_RS21140 | | acetate--CoA ligase | low | > 64 |
| Rhodospirillum rubrum S1H | 0.59 | Rru_A2109 | | ATP-dependent Clp protease ATP-binding subunit ClpA (NCBI) | 0.65 | Rru_A3575 | | Acetate--CoA ligase (NCBI) | low | > 58 |
| Azospirillum brasilense Sp245 | 0.59 | AZOBR_RS05175 | | ATP-dependent Clp protease ATP-binding protein | 0.66 | AZOBR_RS00270 | | acetyl-CoA synthetase | low | > 97 |
| Azospirillum sp. SherDot2 | 0.59 | MPMX19_00503 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.65 | MPMX19_02038 | | Acetyl-coenzyme A synthetase | low | > 112 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.58 | A4249_RS08390 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.61 | A4249_RS15190 | | acetate--CoA ligase | low | > 48 |
| Acinetobacter radioresistens SK82 | 0.58 | MPMX26_01284 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.64 | MPMX26_02906 | | Acetyl-coenzyme A synthetase | low | > 36 |
| Sphingomonas koreensis DSMZ 15582 | 0.58 | Ga0059261_1001 | | ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) | 0.62 | Ga0059261_1313 | | acetyl-coenzyme A synthetase (EC 6.2.1.1) | 0.39 | 64 |
| Caulobacter crescentus NA1000 | 0.58 | CCNA_02553 | | ATP-dependent clp protease ATP-binding subunit ClpA | 0.60 | CCNA_03696 | | acetyl-coenzyme A synthetase | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.58 | CCNA_02553 | | ATP-dependent clp protease ATP-binding subunit ClpA | 0.60 | CCNA_03696 | | acetyl-coenzyme A synthetase | low | > 67 |
| Dinoroseobacter shibae DFL-12 | 0.58 | Dshi_2939 | | ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) | 0.63 | Dshi_3553 | | acetate--CoA ligase (RefSeq) | — | — |
| Bosea sp. OAE506 | 0.57 | ABIE41_RS18235 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.66 | ABIE41_RS05675 | | acetate--CoA ligase | low | > 77 |
| Rhizobium sp. OAE497 | 0.57 | ABIE40_RS08865 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.63 | ABIE40_RS19160 | | acetate--CoA ligase | low | > 107 |
| Rhodopseudomonas palustris CGA009 | 0.57 | TX73_016270 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.66 | TX73_001095 | | acetate--CoA ligase | low | > 86 |
| Phaeobacter inhibens DSM 17395 | 0.57 | PGA1_c25150 | | ATP-dependent Clp protease ATP-binding subunit | 0.59 | PGA1_c12950 | | acetyl-coenzyme A synthetase Acs | low | > 62 |
| Agrobacterium fabrum C58 | 0.56 | Atu1364 | | ATP-dependent Clp protease, ATP-binding subunit | 0.63 | Atu2745 | | acetyl-coenzyme A synthetase | low | > 89 |
| Sinorhizobium meliloti 1021 | 0.55 | SMc02109 | | ATP-dependent Clp protease ATP-binding subunit protein | 0.63 | SMc04093 | | acetyl-CoA synthetase | — | — |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.51 | DVU1602 | clpA | ATP-dependent Clp protease, ATP-binding subunit ClpA (TIGR) | 0.55 | DVU2969 | | acetoacetyl-CoA synthase (TIGR) | low | > 55 |
| Desulfovibrio vulgaris Miyazaki F | 0.50 | DvMF_0458 | | ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) | 0.56 | DvMF_1775 | | acetate/CoA ligase (RefSeq) | low | > 51 |
| Phocaeicola vulgatus CL09T03C04 | 0.41 | HMPREF1058_RS09040 | | AAA family ATPase | 0.14 | HMPREF1058_RS08765 | | AMP-binding protein | low | > 67 |
Not shown: 1 genomes with orthologs for IAI47_12945 only; 12 genomes with orthologs for IAI47_17715 only