Conservation of cofitness between HSERO_RS03615 and HSERO_RS21375 in Herbaspirillum seropedicae SmR1

90 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS03615 (dimethylallyl)adenosine tRNA methylthiotransferase 1.0 HSERO_RS21375 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 0.34 3
Paraburkholderia sabiae LMG 24235 0.76 QEN71_RS02195 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.49 QEN71_RS27675 peptide chain release factor N(5)-glutamine methyltransferase low > 153
Hydrogenophaga sp. GW460-11-11-14-LB1 0.75 GFF613 tRNA-i(6)A37 methylthiotransferase 0.39 GFF1267 Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2 0.69 12
Burkholderia phytofirmans PsJN 0.75 BPHYT_RS16535 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.51 BPHYT_RS17520 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase low > 109
Paraburkholderia bryophila 376MFSha3.1 0.75 H281DRAFT_04239 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.49 H281DRAFT_05691 [protein release factor]-glutamine N5-methyltransferase
Dechlorosoma suillum PS 0.74 Dsui_1194 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 0.54 Dsui_0119 protein-(glutamine-N5) methyltransferase, release factor-specific
Ralstonia solanacearum PSI07 0.73 RPSI07_RS21380 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.46 RPSI07_RS10635 peptide chain release factor N(5)-glutamine methyltransferase
Cupriavidus basilensis FW507-4G11 0.73 RR42_RS02855 dimethylallyladenosine tRNA methylthiotransferase 0.51 RR42_RS18480 SAM-dependent methyltransferase
Ralstonia solanacearum IBSBF1503 0.73 RALBFv3_RS11825 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.46 RALBFv3_RS06595 peptide chain release factor N(5)-glutamine methyltransferase low > 76
Ralstonia solanacearum UW163 0.73 UW163_RS01760 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.46 UW163_RS07030 peptide chain release factor N(5)-glutamine methyltransferase
Ralstonia solanacearum GMI1000 0.73 RS_RS02645 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.46 RS_RS14545 peptide chain release factor N(5)-glutamine methyltransferase
Ralstonia sp. UNC404CL21Col 0.73 ABZR87_RS07780 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.50 ABZR87_RS02260 peptide chain release factor N(5)-glutamine methyltransferase
Acidovorax sp. GW101-3H11 0.72 Ac3H11_4008 tRNA-i(6)A37 methylthiotransferase 0.39 Ac3H11_4779 Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2
Variovorax sp. SCN45 0.71 GFF7320 tRNA-i(6)A37 methylthiotransferase (EC 2.8.4.3) 0.41 GFF2523 Peptide chain release factor N(5)-glutamine methyltransferase (EC 2.1.1.297) low > 127
Variovorax sp. OAS795 0.71 ABID97_RS06475 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.39 ABID97_RS07185 peptide chain release factor N(5)-glutamine methyltransferase
Castellaniella sp019104865 MT123 0.70 ABCV34_RS15345 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.44 ABCV34_RS14060 peptide chain release factor N(5)-glutamine methyltransferase
Rhodanobacter denitrificans MT42 0.68 LRK55_RS13465 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.39 LRK55_RS12145 peptide chain release factor N(5)-glutamine methyltransferase
Dyella japonica UNC79MFTsu3.2 0.68 ABZR86_RS09895 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.44 ABZR86_RS19370 peptide chain release factor N(5)-glutamine methyltransferase
Rhodanobacter denitrificans FW104-10B01 0.67 LRK54_RS13750 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.38 LRK54_RS12410 peptide chain release factor N(5)-glutamine methyltransferase
Lysobacter sp. OAE881 0.67 ABIE51_RS15455 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.40 ABIE51_RS05490 peptide chain release factor N(5)-glutamine methyltransferase
Xanthomonas campestris pv. campestris strain 8004 0.67 Xcc-8004.2224.1 tRNA-i(6)A37 methylthiotransferase 0.40 Xcc-8004.4220.1 Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2
Rhodanobacter sp. FW510-T8 0.67 OKGIIK_02990 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.43 OKGIIK_02015 Release factor glutamine methyltransferase
Kangiella aquimarina DSM 16071 0.66 B158DRAFT_0099 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 0.39 B158DRAFT_2064 [protein release factor]-glutamine N5-methyltransferase (EC 2.1.1.-) low > 40
Marinobacter adhaerens HP15 0.64 HP15_2466 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.39 HP15_713 modification methylase, HemK family
Shewanella amazonensis SB2B 0.63 Sama_2575 tRNA-i(6)A37 modification enzyme MiaB (RefSeq) 0.38 Sama_2565 hemK family protein (RefSeq)
Pantoea sp. MT58 0.63 IAI47_13945 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.37 IAI47_11265 peptide chain release factor N(5)-glutamine methyltransferase
Alteromonas macleodii MIT1002 0.63 MIT1002_01480 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB 0.39 MIT1002_01515 Release factor glutamine methyltransferase low > 70
Shewanella sp. ANA-3 0.62 Shewana3_1008 tRNA-i(6)A37 thiotransferase enzyme MiaB (RefSeq) 0.37 Shewana3_0770 HemK family modification methylase (RefSeq)
Shewanella oneidensis MR-1 0.62 SO1181 miaB tRNA-i(6)A37 modification enzyme MiaB (NCBI ptt file) 0.37 SO3832 hemK family protein (NCBI ptt file) low > 76
Pseudomonas sp. S08-1 0.62 OH686_09215 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.40 OH686_07905 protein-(glutamine-N5) methyltransferase, release factor-specific low > 80
Escherichia coli ECRC62 0.62 BNILDI_21610 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.39 BNILDI_18760 prmC peptide chain release factor N(5)-glutamine methyltransferase low > 75
Escherichia coli ECRC100 0.62 OKFHMN_07225 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.39 OKFHMN_28455 prmC peptide chain release factor N(5)-glutamine methyltransferase
Escherichia coli BL21 0.62 ECD_00629 tRNA-i(6)A37 methylthiotransferase 0.40 ECD_01187 RF-1 and RF-2 N5-glutamine methyltransferase
Escherichia coli BW25113 0.62 b0661 miaB isopentenyl-adenosine A37 tRNA methylthiolase (NCBI) 0.39 b1212 prmC N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase (NCBI)
Escherichia coli HS(pFamp)R (ATCC 700891) 0.62 OHPLBJKB_03051 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.39 OHPLBJKB_02475 Release factor glutamine methyltransferase low > 73
Escherichia fergusonii Becca 0.62 EFB2_03438 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.39 EFB2_02715 Release factor glutamine methyltransferase
Escherichia coli ECRC102 0.62 NIAGMN_05280 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.39 NIAGMN_27780 prmC peptide chain release factor N(5)-glutamine methyltransferase
Escherichia coli ECOR27 0.62 NOLOHH_23605 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.38 NOLOHH_20605 prmC peptide chain release factor N(5)-glutamine methyltransferase
Escherichia coli ECOR38 0.62 HEPCGN_01005 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.40 HEPCGN_24920 prmC peptide chain release factor N(5)-glutamine methyltransferase low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.62 GFF4579 tRNA-i(6)A37 methylthiotransferase 0.40 GFF2773 Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2 low > 78
Pseudomonas fluorescens GW456-L13 0.62 PfGW456L13_1380 tRNA-i(6)A37 methylthiotransferase 0.38 PfGW456L13_1583 Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2
Escherichia coli ECRC99 0.62 KEDOAH_20745 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.39 KEDOAH_25450 prmC peptide chain release factor N(5)-glutamine methyltransferase
Escherichia coli ECRC98 0.62 JDDGAC_10870 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.39 JDDGAC_06120 prmC peptide chain release factor N(5)-glutamine methyltransferase low > 86
Escherichia coli ECRC101 0.62 MCAODC_26440 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.39 MCAODC_21805 prmC peptide chain release factor N(5)-glutamine methyltransferase
Pseudomonas fluorescens FW300-N2E3 0.62 AO353_06375 (dimethylallyl)adenosine tRNA methylthiotransferase 0.42 AO353_14790 protein-(glutamine-N5) methyltransferase, release factor-specific
Escherichia coli Nissle 1917 0.62 ECOLIN_RS03555 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.39 ECOLIN_RS07325 peptide chain release factor N(5)-glutamine methyltransferase
Pseudomonas syringae pv. syringae B728a ΔmexB 0.62 Psyr_4345 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.42 Psyr_0950 [protein release factor]-glutamine N5-methyltransferase low > 86
Pseudomonas syringae pv. syringae B728a 0.62 Psyr_4345 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.42 Psyr_0950 [protein release factor]-glutamine N5-methyltransferase
Pseudomonas fluorescens FW300-N2C3 0.62 AO356_15410 (dimethylallyl)adenosine tRNA methylthiotransferase 0.42 AO356_16500 protein-(glutamine-N5) methyltransferase, release factor-specific
Pseudomonas fluorescens FW300-N2E2 0.62 Pf6N2E2_5018 tRNA-i(6)A37 methylthiotransferase 0.41 Pf6N2E2_5222 Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2
Serratia liquefaciens MT49 0.62 IAI46_06025 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.42 IAI46_10285 peptide chain release factor N(5)-glutamine methyltransferase low > 86
Pseudomonas fluorescens FW300-N1B4 0.62 Pf1N1B4_2712 tRNA-i(6)A37 methylthiotransferase 0.42 Pf1N1B4_2920 Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2
Pseudomonas sp. RS175 0.62 PFR28_03848 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.41 PFR28_03654 Release factor glutamine methyltransferase
Erwinia tracheiphila SCR3 0.61 LU632_RS16305 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.43 LU632_RS10740 prmC peptide chain release factor N(5)-glutamine methyltransferase
Vibrio cholerae E7946 ATCC 55056 0.61 CSW01_04915 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.40 CSW01_10840 protein-(glutamine-N5) methyltransferase, release factor-specific
Pseudomonas simiae WCS417 0.61 PS417_24625 (dimethylallyl)adenosine tRNA methylthiotransferase 0.38 PS417_03610 SAM-dependent methyltransferase
Pseudomonas fluorescens SBW25-INTG 0.61 PFLU_RS26555 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.39 PFLU_RS03660 peptide chain release factor N(5)-glutamine methyltransferase
Pseudomonas fluorescens SBW25 0.61 PFLU_RS26555 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.39 PFLU_RS03660 peptide chain release factor N(5)-glutamine methyltransferase
Shewanella loihica PV-4 0.61 Shew_2923 tRNA-i(6)A37 thiotransferase enzyme MiaB (RefSeq) 0.36 Shew_2911 HemK family modification methylase (RefSeq)
Klebsiella michiganensis M5al 0.61 BWI76_RS08135 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.39 BWI76_RS17430 protein-(glutamine-N5) methyltransferase, release factor-specific
Pseudomonas stutzeri RCH2 0.61 Psest_0532 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 0.42 Psest_1114 protein-(glutamine-N5) methyltransferase, release factor-specific
Pectobacterium carotovorum WPP14 0.61 HER17_RS15165 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.42 HER17_RS10485 peptide chain release factor N(5)-glutamine methyltransferase low > 75
Enterobacter sp. TBS_079 0.60 MPMX20_01311 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.41 MPMX20_02635 Release factor glutamine methyltransferase low > 85
Enterobacter asburiae PDN3 0.60 EX28DRAFT_2310 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 0.41 EX28DRAFT_0831 protein-(glutamine-N5) methyltransferase, release factor-specific
Dickeya dianthicola 67-19 0.60 HGI48_RS06295 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.42 HGI48_RS10935 peptide chain release factor N(5)-glutamine methyltransferase
Dickeya dadantii 3937 0.60 DDA3937_RS06250 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.41 DDA3937_RS10985 peptide chain release factor N(5)-glutamine methyltransferase low > 74
Dickeya dianthicola ME23 0.60 DZA65_RS06640 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.41 DZA65_RS11395 peptide chain release factor N(5)-glutamine methyltransferase low > 75
Rahnella sp. WP5 0.60 EX31_RS23205 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.39 EX31_RS07310 peptide chain release factor N(5)-glutamine methyltransferase
Acinetobacter radioresistens SK82 0.56 MPMX26_02667 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.36 MPMX26_01175 Release factor glutamine methyltransferase low > 36
Azospirillum brasilense Sp245 0.43 AZOBR_RS01475 (dimethylallyl)adenosine tRNA methylthiotransferase 0.27 AZOBR_RS18930 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
Azospirillum sp. SherDot2 0.43 MPMX19_02511 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.25 MPMX19_02446 Release factor glutamine methyltransferase
Agrobacterium fabrum C58 0.43 Atu0356 miaB protein 0.24 Atu4175 protoporphyrinogen oxidase
Rhizobium sp. OAE497 0.43 ABIE40_RS01705 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.25 ABIE40_RS17290 peptide chain release factor N(5)-glutamine methyltransferase 0.40 85
Sinorhizobium meliloti 1021 0.43 SMc01115 (dimethylallyl)adenosine tRNA methylthiotransferase 0.24 SMc02435 methyltransferase low > 103
Magnetospirillum magneticum AMB-1 0.43 AMB_RS22585 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.23 AMB_RS08180 peptide chain release factor N(5)-glutamine methyltransferase
Caulobacter crescentus NA1000 Δfur 0.42 CCNA_00054 tRNA 2-methylthioadenosine synthase 0.30 CCNA_00918 peptide release factor-glutamine N5-methyltransferase
Caulobacter crescentus NA1000 0.42 CCNA_00054 tRNA 2-methylthioadenosine synthase 0.30 CCNA_00918 peptide release factor-glutamine N5-methyltransferase
Phaeobacter inhibens DSM 17395 0.42 PGA1_c04710 (dimethylallyl)adenosine tRNA methylthiotransferase MiaB 0.27 PGA1_c19880 methyltransferase, HemK family
Brevundimonas sp. GW460-12-10-14-LB2 0.41 A4249_RS14720 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.27 A4249_RS11000 peptide chain release factor N(5)-glutamine methyltransferase
Sphingomonas koreensis DSMZ 15582 0.39 Ga0059261_1604 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 0.24 Ga0059261_1601 protein-(glutamine-N5) methyltransferase, release factor-specific low > 68
Bacteroides stercoris CC31F 0.38 HMPREF1181_RS01770 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.25 HMPREF1181_RS03390 peptide chain release factor N(5)-glutamine methyltransferase low > 56
Rhodopseudomonas palustris CGA009 0.38 TX73_002325 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.28 TX73_003140 peptide chain release factor N(5)-glutamine methyltransferase
Bacteroides thetaiotaomicron VPI-5482 0.38 BT3195 conserved hypothetical protein (NCBI ptt file) 0.24 BT3729 putative protoporphyrinogen oxidase (NCBI ptt file) low > 81
Bacteroides ovatus ATCC 8483 0.37 BACOVA_02895 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.21 BACOVA_03547 protein-(glutamine-N5) methyltransferase, release factor-specific low > 94
Phocaeicola vulgatus CL09T03C04 0.37 HMPREF1058_RS11280 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.23 HMPREF1058_RS09610 peptide chain release factor N(5)-glutamine methyltransferase low > 67
Phocaeicola dorei CL03T12C01 0.36 ABI39_RS05650 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.24 ABI39_RS07070 peptide chain release factor N(5)-glutamine methyltransferase low > 72
Parabacteroides merdae CL09T00C40 0.35 HMPREF1078_RS17135 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.22 HMPREF1078_RS11290 peptide chain release factor N(5)-glutamine methyltransferase low > 61
Desulfovibrio vulgaris Hildenborough JW710 0.35 DVU0984 miaB tRNA-i(6)A37 modification enzyme MiaB (TIGR) 0.30 DVU2916 hemK hemK protein (TIGR)
Pontibacter actiniarum KMM 6156, DSM 19842 0.32 CA264_05315 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.24 CA264_17895 protein-(glutamine-N5) methyltransferase, release factor-specific
Mucilaginibacter yixingensis YX-36 DSM 26809 0.30 ABZR88_RS18330 MiaB/RimO family radical SAM methylthiotransferase 0.25 ABZR88_RS10215 peptide chain release factor N(5)-glutamine methyltransferase
Pedobacter sp. GW460-11-11-14-LB5 0.30 CA265_RS21675 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.21 CA265_RS09525 protein-(glutamine-N5) methyltransferase, release factor-specific low > 88

Not shown: 11 genomes with orthologs for HSERO_RS03615 only; 2 genomes with orthologs for HSERO_RS21375 only