Conservation of cofitness between HSERO_RS04220 and HSERO_RS16485 in Herbaspirillum seropedicae SmR1

87 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS04220 epoxyqueuosine reductase 1.0 HSERO_RS16485 tRNA pseudouridine synthase A 0.38 3
Paraburkholderia sabiae LMG 24235 0.65 QEN71_RS02745 tRNA epoxyqueuosine(34) reductase QueG 0.50 QEN71_RS17635 tRNA pseudouridine(38-40) synthase TruA low > 153
Paraburkholderia graminis OAS925 0.64 ABIE53_003363 epoxyqueuosine reductase 0.50 ABIE53_004807 tRNA pseudouridine38-40 synthase low > 113
Burkholderia phytofirmans PsJN 0.63 BPHYT_RS15960 iron-sulfur cluster binding protein 0.51 BPHYT_RS33885 tRNA pseudouridine synthase A 0.49 15
Cupriavidus basilensis FW507-4G11 0.63 RR42_RS03405 epoxyqueuosine reductase 0.46 RR42_RS14370 tRNA pseudouridine synthase A — —
Ralstonia solanacearum PSI07 0.63 RPSI07_RS12175 tRNA epoxyqueuosine(34) reductase QueG 0.50 RPSI07_RS14720 tRNA pseudouridine(38-40) synthase TruA low > 81
Ralstonia solanacearum GMI1000 0.63 RS_RS12740 tRNA epoxyqueuosine(34) reductase QueG 0.50 RS_RS09975 tRNA pseudouridine(38-40) synthase TruA low > 80
Ralstonia sp. UNC404CL21Col 0.63 ABZR87_RS00775 tRNA epoxyqueuosine(34) reductase QueG 0.49 ABZR87_RS14510 tRNA pseudouridine(38-40) synthase TruA 0.44 28
Ralstonia solanacearum UW163 0.62 UW163_RS08505 tRNA epoxyqueuosine(34) reductase QueG 0.49 UW163_RS11130 tRNA pseudouridine(38-40) synthase TruA — —
Ralstonia solanacearum IBSBF1503 0.62 RALBFv3_RS05120 tRNA epoxyqueuosine(34) reductase QueG 0.49 RALBFv3_RS02595 tRNA pseudouridine(38-40) synthase TruA — —
Paraburkholderia bryophila 376MFSha3.1 0.62 H281DRAFT_04128 epoxyqueuosine reductase 0.50 H281DRAFT_06069 tRNA pseudouridine38-40 synthase low > 103
Hydrogenophaga sp. GW460-11-11-14-LB1 0.61 GFF5474 Epoxyqueuosine (oQ) reductase QueG 0.42 GFF3357 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 90
Acidovorax sp. GW101-3H11 0.60 Ac3H11_306 Epoxyqueuosine (oQ) reductase QueG 0.45 Ac3H11_1532 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 79
Variovorax sp. OAS795 0.59 ABID97_RS20285 tRNA epoxyqueuosine(34) reductase QueG 0.41 ABID97_RS08440 tRNA pseudouridine(38-40) synthase TruA low > 91
Pseudomonas sp. S08-1 0.59 OH686_09500 epoxyqueuosine reductase 0.41 OH686_04450 tRNA pseudouridine(38-40) synthase 0.69 66
Pseudomonas syringae pv. syringae B728a ΔmexB 0.59 Psyr_0566 4Fe-4S cluster binding protein 0.40 Psyr_1662 tRNA pseudouridine synthase low > 86
Pseudomonas syringae pv. syringae B728a 0.59 Psyr_0566 4Fe-4S cluster binding protein 0.40 Psyr_1662 tRNA pseudouridine synthase low > 86
Dyella japonica UNC79MFTsu3.2 0.58 ABZR86_RS00835 tRNA epoxyqueuosine(34) reductase QueG 0.33 ABZR86_RS08015 tRNA pseudouridine(38-40) synthase TruA low > 74
Castellaniella sp019104865 MT123 0.58 ABCV34_RS13905 tRNA epoxyqueuosine(34) reductase QueG 0.45 ABCV34_RS04265 tRNA pseudouridine(38-40) synthase TruA low > 48
Pseudomonas fluorescens FW300-N1B4 0.57 Pf1N1B4_1418 Epoxyqueuosine (oQ) reductase QueG 0.40 Pf1N1B4_7 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 87
Pseudomonas fluorescens SBW25-INTG 0.57 PFLU_RS02540 tRNA epoxyqueuosine(34) reductase QueG 0.39 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA low > 109
Pseudomonas fluorescens SBW25 0.57 PFLU_RS02540 tRNA epoxyqueuosine(34) reductase QueG 0.39 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA low > 109
Pseudomonas fluorescens FW300-N2E3 0.57 AO353_13115 epoxyqueuosine reductase 0.40 AO353_20660 pseudouridine synthase low > 101
Pseudomonas fluorescens GW456-L13 0.57 PfGW456L13_160 Epoxyqueuosine (oQ) reductase QueG 0.40 PfGW456L13_3941 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 87
Pseudomonas sp. RS175 0.57 PFR28_05115 Epoxyqueuosine reductase 0.39 PFR28_02817 tRNA pseudouridine synthase A low > 88
Pseudomonas simiae WCS417 0.57 PS417_02460 epoxyqueuosine reductase 0.40 PS417_18565 pseudouridine synthase — —
Pseudomonas fluorescens FW300-N2C3 0.57 AO356_08685 epoxyqueuosine reductase 0.40 AO356_21435 pseudouridine synthase low > 104
Pseudomonas fluorescens FW300-N2E2 0.56 Pf6N2E2_3620 Epoxyqueuosine (oQ) reductase QueG 0.40 Pf6N2E2_70 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 103
Rhodanobacter denitrificans FW104-10B01 0.55 LRK54_RS15130 tRNA epoxyqueuosine(34) reductase QueG 0.33 LRK54_RS01700 tRNA pseudouridine(38-40) synthase TruA low > 59
Serratia liquefaciens MT49 0.55 IAI46_01595 tRNA epoxyqueuosine(34) reductase QueG 0.44 IAI46_17840 tRNA pseudouridine(38-40) synthase TruA low > 86
Rhodanobacter sp. FW510-T8 0.55 OKGIIK_03900 queG tRNA epoxyqueuosine(34) reductase QueG 0.32 OKGIIK_04830 truA tRNA pseudouridine(38-40) synthase TruA — —
Escherichia coli ECRC98 0.55 JDDGAC_15925 queG tRNA epoxyqueuosine(34) reductase QueG 0.43 JDDGAC_26630 truA aspartate-semialdehyde dehydrogenase — —
Pseudomonas stutzeri RCH2 0.55 Psest_0677 iron-sulfur cluster binding protein, putative 0.38 Psest_2585 pseudouridylate synthase I low > 67
Rhodanobacter denitrificans MT42 0.55 LRK55_RS14845 tRNA epoxyqueuosine(34) reductase QueG 0.33 LRK55_RS01480 tRNA pseudouridine(38-40) synthase TruA low > 63
Escherichia coli ECOR38 0.55 HEPCGN_10515 queG tRNA epoxyqueuosine(34) reductase QueG 0.43 HEPCGN_21875 truA aspartate-semialdehyde dehydrogenase low > 87
Escherichia coli ECRC100 0.55 OKFHMN_12285 queG tRNA epoxyqueuosine(34) reductase QueG 0.43 OKFHMN_22670 truA aspartate-semialdehyde dehydrogenase low > 80
Escherichia coli ECRC102 0.55 NIAGMN_10135 queG tRNA epoxyqueuosine(34) reductase QueG 0.43 NIAGMN_20445 truA aspartate-semialdehyde dehydrogenase — —
Variovorax sp. SCN45 0.55 GFF4805 Epoxyqueuosine reductase (EC 1.17.99.6) QueG 0.41 GFF3885 tRNA pseudouridine(38-40) synthase (EC 5.4.99.12) low > 127
Escherichia coli ECRC99 0.55 KEDOAH_15870 queG tRNA epoxyqueuosine(34) reductase QueG 0.43 KEDOAH_05525 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli ECOR27 0.55 NOLOHH_04550 queG tRNA epoxyqueuosine(34) reductase QueG 0.43 NOLOHH_14305 truA tRNA pseudouridine(38-40) synthase TruA 0.47 71
Escherichia coli BW25113 0.55 b4166 yjeS predicted Fe-S electron transport protein (NCBI) 0.43 b2318 truA tRNA pseudouridine synthase A (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.55 OHPLBJKB_03876 Epoxyqueuosine reductase 0.43 OHPLBJKB_01387 tRNA pseudouridine synthase A low > 73
Escherichia coli BL21 0.55 ECD_04033 epoxyqueuosine reductase, cobalamine-stimulated; queosine biosynthesis 0.43 ECD_02243 tRNA pseudouridine(38-40) synthase — —
Escherichia coli ECRC62 0.55 BNILDI_06940 queG tRNA epoxyqueuosine(34) reductase QueG 0.43 BNILDI_13225 truA tRNA pseudouridine(38-40) synthase TruA low > 75
Escherichia coli ECRC101 0.55 MCAODC_02800 queG tRNA epoxyqueuosine(34) reductase QueG 0.43 MCAODC_13710 truA aspartate-semialdehyde dehydrogenase low > 87
Escherichia coli Nissle 1917 0.55 ECOLIN_RS24200 tRNA epoxyqueuosine(34) reductase QueG 0.43 ECOLIN_RS13435 tRNA pseudouridine(38-40) synthase TruA low > 55
Pseudomonas putida KT2440 0.55 PP_4900 epoxyqueuosine reductase 0.41 PP_1994 tRNA pseudouridine (38-40)synthase 0.33 24
Dickeya dadantii 3937 0.55 DDA3937_RS18645 tRNA epoxyqueuosine(34) reductase QueG 0.43 DDA3937_RS14465 tRNA pseudouridine(38-40) synthase TruA low > 74
Dickeya dianthicola 67-19 0.55 HGI48_RS18575 tRNA epoxyqueuosine(34) reductase QueG 0.41 HGI48_RS14435 tRNA pseudouridine(38-40) synthase TruA low > 71
Escherichia fergusonii Becca 0.55 EFB2_04369 Epoxyqueuosine reductase 0.43 EFB2_01540 tRNA pseudouridine synthase A 0.43 35
Dickeya dianthicola ME23 0.55 DZA65_RS19710 tRNA epoxyqueuosine(34) reductase QueG 0.42 DZA65_RS15370 tRNA pseudouridine(38-40) synthase TruA low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.54 GFF819 Epoxyqueuosine (oQ) reductase QueG 0.43 GFF1934 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 78
Klebsiella michiganensis M5al 0.54 BWI76_RS02505 tRNA epoxyqueuosine(34) reductase QueG 0.41 BWI76_RS20380 tRNA pseudouridine(38-40) synthase TruA low > 92
Marinobacter adhaerens HP15 0.54 HP15_2505 iron-sulfur cluster binding protein 0.42 HP15_1829 tRNA pseudouridine synthase A low > 73
Pectobacterium carotovorum WPP14 0.54 HER17_RS02555 tRNA epoxyqueuosine(34) reductase QueG 0.41 HER17_RS06990 tRNA pseudouridine(38-40) synthase TruA low > 75
Enterobacter sp. TBS_079 0.53 MPMX20_00447 Epoxyqueuosine reductase 0.43 MPMX20_03253 tRNA pseudouridine synthase A low > 85
Enterobacter asburiae PDN3 0.53 EX28DRAFT_3363 epoxyqueuosine reductase 0.43 EX28DRAFT_0286 tRNA pseudouridine(38-40) synthase low > 76
Shewanella sp. ANA-3 0.53 Shewana3_0745 putative iron-sulfur cluster binding protein (RefSeq) 0.43 Shewana3_1479 truA tRNA pseudouridine synthase A (RefSeq) low > 73
Lysobacter sp. OAE881 0.53 ABIE51_RS08045 tRNA epoxyqueuosine(34) reductase QueG 0.36 ABIE51_RS08245 tRNA pseudouridine(38-40) synthase TruA low > 62
Alteromonas macleodii MIT1002 0.53 MIT1002_03794 Epoxyqueuosine reductase 0.40 MIT1002_02529 tRNA pseudouridine synthase A 0.60 22
Shewanella loihica PV-4 0.53 Shew_2979 putative iron-sulfur cluster binding protein (RefSeq) 0.41 Shew_2306 tRNA pseudouridine synthase A (RefSeq) — —
Xanthomonas campestris pv. campestris strain 8004 0.52 Xcc-8004.2252.1 Epoxyqueuosine (oQ) reductase QueG 0.35 Xcc-8004.1961.1 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 74
Vibrio cholerae E7946 ATCC 55056 0.52 CSW01_01810 tRNA epoxyqueuosine(34) reductase QueG 0.41 CSW01_05090 tRNA pseudouridine(38-40) synthase TruA low > 62
Pantoea sp. MT58 0.52 IAI47_02560 tRNA epoxyqueuosine(34) reductase QueG 0.39 IAI47_06245 tRNA pseudouridine(38-40) synthase TruA low > 76
Rahnella sp. WP5 0.52 EX31_RS08850 tRNA epoxyqueuosine(34) reductase QueG 0.42 EX31_RS19600 tRNA pseudouridine(38-40) synthase TruA low > 89
Dechlorosoma suillum PS 0.50 Dsui_3502 iron-sulfur cluster binding protein, putative 0.47 Dsui_3194 pseudouridylate synthase I low > 51
Shewanella amazonensis SB2B 0.50 Sama_2625 iron-sulfur cluster-binding protein (RefSeq) 0.42 Sama_2150 truA tRNA pseudouridine synthase A (RefSeq) low > 62
Acinetobacter radioresistens SK82 0.48 MPMX26_01783 Epoxyqueuosine reductase 0.31 MPMX26_00352 tRNA pseudouridine synthase A low > 36
Kangiella aquimarina DSM 16071 0.45 B158DRAFT_0486 iron-sulfur cluster binding protein, putative 0.37 B158DRAFT_1483 pseudouridylate synthase I low > 40
Rhizobium sp. OAE497 0.34 ABIE40_RS01310 tRNA epoxyqueuosine(34) reductase QueG 0.29 ABIE40_RS01915 tRNA pseudouridine(38-40) synthase TruA low > 107
Sinorhizobium meliloti 1021 0.34 SMc00406 4Fe-4S ferredoxin 0.29 SMc01099 tRNA pseudouridine synthase A low > 103
Rhodospirillum rubrum S1H 0.33 Rru_A0279 4Fe-4S ferredoxin, iron-sulfur binding (NCBI) 0.30 Rru_A3352 Pseudouridylate synthase (NCBI) — —
Agrobacterium fabrum C58 0.32 Atu0292 iron-sulfur cluster binding protein 0.29 Atu0368 tRNA pseudouridine synthase I 0.32 6
Brevundimonas sp. GW460-12-10-14-LB2 0.32 A4249_RS11375 tRNA epoxyqueuosine(34) reductase QueG 0.24 A4249_RS12340 tRNA pseudouridine(38-40) synthase TruA low > 48
Caulobacter crescentus NA1000 0.32 CCNA_03753 iron-sulfur cluster-binding protein 0.26 CCNA_00280 tRNA pseudouridine synthase A 0.44 24
Caulobacter crescentus NA1000 Δfur 0.32 CCNA_03753 iron-sulfur cluster-binding protein 0.26 CCNA_00280 tRNA pseudouridine synthase A 0.63 16
Rhodopseudomonas palustris CGA009 0.31 TX73_000215 tRNA epoxyqueuosine(34) reductase QueG 0.26 TX73_003225 tRNA pseudouridine(38-40) synthase TruA 0.40 57
Sphingomonas koreensis DSMZ 15582 0.31 Ga0059261_1058 epoxyqueuosine reductase 0.24 Ga0059261_0647 tRNA pseudouridine(38-40) synthase 0.27 27
Phaeobacter inhibens DSM 17395 0.31 PGA1_c34310 Uncharacterized Fe-S protein 0.24 PGA1_c05650 tRNA pseudouridine synthase A low > 62
Dinoroseobacter shibae DFL-12 0.30 Dshi_3307 domain of unknown function DUF1730 (RefSeq) 0.26 Dshi_1938 tRNA pseudouridine synthase A (RefSeq) low > 64
Echinicola vietnamensis KMM 6221, DSM 17526 0.30 Echvi_0824 iron-sulfur cluster binding protein, putative 0.22 Echvi_1728 pseudouridylate synthase I low > 79
Magnetospirillum magneticum AMB-1 0.30 AMB_RS03995 tRNA epoxyqueuosine(34) reductase QueG 0.28 AMB_RS01225 tRNA pseudouridine(38-40) synthase TruA low > 64
Pontibacter actiniarum KMM 6156, DSM 19842 0.30 CA264_19810 epoxyqueuosine reductase 0.27 CA264_17725 tRNA pseudouridine synthase A low > 74
Pedobacter sp. GW460-11-11-14-LB5 0.29 CA265_RS07695 tRNA epoxyqueuosine(34) reductase QueG 0.22 CA265_RS15580 tRNA pseudouridine(38-40) synthase TruA low > 88
Mucilaginibacter yixingensis YX-36 DSM 26809 0.29 ABZR88_RS07975 tRNA epoxyqueuosine(34) reductase QueG 0.19 ABZR88_RS21140 tRNA pseudouridine(38-40) synthase TruA low > 71
Parabacteroides merdae CL09T00C40 0.27 HMPREF1078_RS06835 tRNA epoxyqueuosine(34) reductase QueG 0.22 HMPREF1078_RS16085 tRNA pseudouridine(38-40) synthase TruA low > 61
Synechococcus elongatus PCC 7942 0.27 Synpcc7942_0530 4Fe-4S cluster binding 0.21 Synpcc7942_2207 truA tRNA pseudouridine synthase A — —
Bacteroides thetaiotaomicron VPI-5482 0.24 BT3245 putative iron-sulfur cluster-binding protein (NCBI ptt file) 0.21 BT4237 tRNA pseudouridine synthase A (NCBI ptt file) low > 81

Not shown: 1 genomes with orthologs for HSERO_RS04220 only; 13 genomes with orthologs for HSERO_RS16485 only