| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Herbaspirillum seropedicae SmR1 | 1.0 | HSERO_RS08070 | | endonuclease IV | 1.0 | HSERO_RS07610 | | fumarate hydratase | 0.34 | 14 |
| Ralstonia solanacearum PSI07 | 0.76 | RPSI07_RS19265 | | endonuclease III | 0.73 | RPSI07_RS05900 | | class II fumarate hydratase | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.75 | RS_RS04975 | | endonuclease III | 0.73 | RS_RS23320 | | class II fumarate hydratase | low | > 80 |
| Burkholderia phytofirmans PsJN | 0.74 | BPHYT_RS06080 | | endonuclease IV | 0.70 | BPHYT_RS14615 | | fumarate hydratase | low | > 109 |
| Marinobacter adhaerens HP15 | 0.74 | HP15_1285 | | endonuclease III | 0.38 | HP15_3132 | | fumarate hydratase class II | low | > 73 |
| Paraburkholderia graminis OAS925 | 0.74 | ABIE53_001423 | | endonuclease-3 | 0.72 | ABIE53_003084 | | fumarate hydratase class II | low | > 113 |
| Ralstonia solanacearum UW163 | 0.74 | UW163_RS11660 | | endonuclease III | 0.73 | UW163_RS21470 | | class II fumarate hydratase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.74 | RALBFv3_RS14195 | | endonuclease III | 0.73 | RALBFv3_RS17680 | | class II fumarate hydratase | — | — |
| Pseudomonas stutzeri RCH2 | 0.74 | Psest_3118 | | endonuclease III | 0.55 | Psest_2682 | | fumarate hydratase, class II | 0.31 | 21 |
| Ralstonia sp. UNC404CL21Col | 0.74 | ABZR87_RS09915 | | endonuclease III | 0.73 | ABZR87_RS18630 | | class II fumarate hydratase | low | > 80 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.73 | H281DRAFT_00293 | | DNA-(apurinic or apyrimidinic site) lyase /endonuclease III | 0.71 | H281DRAFT_04314 | | fumarase, class II | low | > 103 |
| Cupriavidus basilensis FW507-4G11 | 0.73 | RR42_RS05970 | | endonuclease III | 0.55 | RR42_RS33090 | | fumarate hydratase | low | > 128 |
| Pectobacterium carotovorum WPP14 | 0.73 | HER17_RS10860 | | endonuclease III | 0.71 | HER17_RS10755 | | class II fumarate hydratase | low | > 75 |
| Pseudomonas sp. S08-1 | 0.73 | OH686_03910 | | endonuclease III | 0.56 | OH686_21015 | | fumarate hydratase, class II | low | > 80 |
| Dyella japonica UNC79MFTsu3.2 | 0.72 | ABZR86_RS08185 | | endonuclease III | 0.43 | ABZR86_RS05855 | | class II fumarate hydratase | low | > 74 |
| Pseudomonas fluorescens FW300-N2E2 | 0.72 | Pf6N2E2_5594 | | Endonuclease III (EC 4.2.99.18) | 0.56 | Pf6N2E2_2536 | | Fumarate hydratase class II (EC 4.2.1.2) | low | > 103 |
| Pseudomonas fluorescens FW300-N2E3 | 0.72 | AO353_04085 | | endonuclease III | 0.56 | AO353_02150 | | fumarate hydratase | low | > 101 |
| Escherichia coli ECOR27 | 0.72 | NOLOHH_18045 | nth | endonuclease III | 0.70 | NOLOHH_18155 | fumC | class II fumarate hydratase | — | — |
| Escherichia coli ECOR38 | 0.72 | HEPCGN_05910 | nth | endonuclease III | 0.70 | HEPCGN_06025 | fumC | class II fumarate hydratase | low | > 87 |
| Escherichia coli ECRC62 | 0.72 | BNILDI_16835 | nth | endonuclease III | 0.70 | BNILDI_16945 | fumC | class II fumarate hydratase | low | > 75 |
| Escherichia coli BL21 | 0.72 | ECD_01603 | | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) | 0.70 | ECD_01580 | | fumarate hydratase (fumarase C),aerobic Class II | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.72 | QEN71_RS24560 | | endonuclease III | 0.70 | QEN71_RS04360 | | class II fumarate hydratase | low | > 153 |
| Escherichia coli BW25113 | 0.72 | b1633 | nth | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) (NCBI) | 0.70 | b1611 | fumC | fumarate hydratase (NCBI) | low | > 76 |
| Pseudomonas syringae pv. syringae B728a | 0.72 | Psyr_3888 | | endonuclease III / DNA-(apurinic or apyrimidinic site) lyase | 0.57 | Psyr_3661 | | Fumarate hydratase, class II | low | > 86 |
| Rahnella sp. WP5 | 0.72 | EX31_RS06590 | | endonuclease III | 0.71 | EX31_RS06965 | | class II fumarate hydratase | low | > 89 |
| Escherichia coli Nissle 1917 | 0.72 | ECOLIN_RS09110 | | endonuclease III | 0.70 | ECOLIN_RS08995 | | class II fumarate hydratase | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.72 | Psyr_3888 | | endonuclease III / DNA-(apurinic or apyrimidinic site) lyase | 0.57 | Psyr_3661 | | Fumarate hydratase, class II | low | > 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.72 | OHPLBJKB_02093 | | Endonuclease III | 0.71 | OHPLBJKB_02115 | | Fumarate hydratase class II | low | > 73 |
| Pseudomonas fluorescens FW300-N1B4 | 0.71 | Pf1N1B4_739 | | Endonuclease III (EC 4.2.99.18) | 0.56 | Pf1N1B4_367 | | Fumarate hydratase class II (EC 4.2.1.2) | low | > 87 |
| Erwinia tracheiphila SCR3 | 0.71 | LU632_RS11305 | nth | endonuclease III | 0.69 | LU632_RS12335 | fumC | class II fumarate hydratase | low | > 74 |
| Pseudomonas sp. RS175 | 0.71 | PFR28_03349 | | Endonuclease III | 0.55 | PFR28_00889 | | Fumarate hydratase class II | low | > 88 |
| Enterobacter sp. TBS_079 | 0.71 | MPMX20_02005 | | Endonuclease III | 0.72 | MPMX20_02022 | | Fumarate hydratase class II | low | > 85 |
| Pseudomonas fluorescens FW300-N2C3 | 0.71 | AO356_18345 | | endonuclease III | 0.55 | AO356_03545 | | fumarate hydratase | — | — |
| Escherichia fergusonii Becca | 0.71 | EFB2_02359 | | Endonuclease III | 0.70 | EFB2_02381 | | Fumarate hydratase class II | low | > 86 |
| Enterobacter asburiae PDN3 | 0.71 | EX28DRAFT_1629 | | DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) | 0.72 | EX28DRAFT_1608 | | fumarase, class II (EC 4.2.1.2) | low | > 76 |
| Escherichia coli ECRC100 | 0.71 | OKFHMN_27525 | nth | endonuclease III | 0.70 | OKFHMN_27650 | fumC | class II fumarate hydratase | low | > 80 |
| Kangiella aquimarina DSM 16071 | 0.71 | B158DRAFT_2365 | | DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) | 0.39 | B158DRAFT_1200 | | fumarase, class II (EC 4.2.1.2) | low | > 40 |
| Escherichia coli ECRC99 | 0.71 | KEDOAH_00580 | nth | endonuclease III | 0.70 | KEDOAH_00455 | fumC | class II fumarate hydratase | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.71 | CSW01_05145 | | endonuclease III | 0.43 | CSW01_07895 | | class II fumarate hydratase | low | > 62 |
| Escherichia coli ECRC98 | 0.71 | JDDGAC_02115 | nth | endonuclease III | 0.70 | JDDGAC_02240 | fumC | class II fumarate hydratase | low | > 86 |
| Escherichia coli ECRC102 | 0.71 | NIAGMN_00540 | nth | endonuclease III | 0.70 | NIAGMN_00425 | fumC | class II fumarate hydratase | — | — |
| Serratia liquefaciens MT49 | 0.71 | IAI46_11455 | | endonuclease III | 0.71 | IAI46_11655 | | class II fumarate hydratase | low | > 86 |
| Escherichia coli ECRC101 | 0.71 | MCAODC_17885 | nth | endonuclease III | 0.70 | MCAODC_17760 | fumC | class II fumarate hydratase | low | > 87 |
| Pantoea sp. MT58 | 0.71 | IAI47_10475 | | endonuclease III | 0.70 | IAI47_10335 | | class II fumarate hydratase | low | > 76 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.71 | GFF3641 | | Endonuclease III (EC 4.2.99.18) | 0.71 | GFF1806 | | Fumarate hydratase class II (EC 4.2.1.2) | low | > 78 |
| Pseudomonas putida KT2440 | 0.71 | PP_1092 | | DNA glycosylase/apyrimidinic (AP) lyase specific for damaged pyrimidinic sites | 0.56 | PP_1755 | | fumarate hydratase (class 2) | low | > 96 |
| Dickeya dianthicola ME23 | 0.71 | DZA65_RS11025 | | endonuclease III | 0.71 | DZA65_RS11125 | | class II fumarate hydratase | low | > 75 |
| Pseudomonas simiae WCS417 | 0.71 | PS417_05655 | | endonuclease III | 0.57 | PS417_19200 | | fumarate hydratase | low | > 88 |
| Klebsiella michiganensis M5al | 0.71 | BWI76_RS16385 | | endonuclease III | 0.72 | BWI76_RS16270 | | fumarate hydratase, class II | — | — |
| Pseudomonas fluorescens SBW25 | 0.71 | PFLU_RS05740 | | endonuclease III | 0.55 | PFLU_RS21170 | | class II fumarate hydratase | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.71 | PFLU_RS05740 | | endonuclease III | 0.55 | PFLU_RS21170 | | class II fumarate hydratase | low | > 109 |
| Dechlorosoma suillum PS | 0.71 | Dsui_2985 | | endonuclease III | 0.70 | Dsui_0926 | | fumarate hydratase, class II | low | > 51 |
| Pseudomonas fluorescens GW456-L13 | 0.70 | PfGW456L13_1753 | | Endonuclease III (EC 4.2.99.18) | 0.56 | PfGW456L13_2160 | | Fumarate hydratase class II (EC 4.2.1.2) | low | > 87 |
| Acinetobacter radioresistens SK82 | 0.70 | MPMX26_02306 | | Endonuclease III | 0.61 | MPMX26_01446 | | Fumarate hydratase class II | low | > 36 |
| Dickeya dianthicola 67-19 | 0.70 | HGI48_RS10545 | | endonuclease III | 0.71 | HGI48_RS10655 | | class II fumarate hydratase | low | > 71 |
| Dickeya dadantii 3937 | 0.70 | DDA3937_RS10545 | | endonuclease III | 0.71 | DDA3937_RS10655 | | class II fumarate hydratase | low | > 74 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.70 | Xcc-8004.3350.1 | | Endonuclease III (EC 4.2.99.18) | 0.42 | Xcc-8004.3403.1 | | Fumarate hydratase class II (EC 4.2.1.2) | low | > 74 |
| Shewanella loihica PV-4 | 0.69 | Shew_2072 | | endonuclease III (RefSeq) | 0.38 | Shew_0068 | | fumarate lyase (RefSeq) | low | > 60 |
| Rhodanobacter denitrificans MT42 | 0.69 | LRK55_RS01640 | | endonuclease III | 0.41 | LRK55_RS00660 | | class II fumarate hydratase | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.69 | LRK54_RS01850 | | endonuclease III | 0.42 | LRK54_RS00885 | | class II fumarate hydratase | low | > 59 |
| Rhodanobacter sp. FW510-T8 | 0.69 | OKGIIK_04675 | nth | endonuclease III | 0.42 | OKGIIK_06345 | aspA | aspartate ammonia-lyase | low | > 52 |
| Variovorax sp. SCN45 | 0.68 | GFF418 | | Endonuclease III (EC 4.2.99.18) | 0.72 | GFF479 | | Fumarate hydratase class II (EC 4.2.1.2) | low | > 127 |
| Variovorax sp. OAS795 | 0.68 | ABID97_RS17315 | | endonuclease III | 0.71 | ABID97_RS17545 | | class II fumarate hydratase | low | > 91 |
| Shewanella amazonensis SB2B | 0.68 | Sama_1836 | | endonuclease III (RefSeq) | 0.40 | Sama_0822 | | fumarate hydratase (RefSeq) | low | > 62 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.67 | GFF4003 | | Endonuclease III (EC 4.2.99.18) | 0.70 | GFF4101 | | Fumarate hydratase class II (EC 4.2.1.2) | low | > 90 |
| Lysobacter sp. OAE881 | 0.66 | ABIE51_RS07560 | | endonuclease III | 0.41 | ABIE51_RS09015 | | class II fumarate hydratase | low | > 62 |
| Acidovorax sp. GW101-3H11 | 0.66 | Ac3H11_1010 | | Endonuclease III (EC 4.2.99.18) | 0.71 | Ac3H11_943 | | Fumarate hydratase class II (EC 4.2.1.2) | low | > 79 |
| Castellaniella sp019104865 MT123 | 0.61 | ABCV34_RS08465 | | endonuclease III | 0.58 | ABCV34_RS03655 | | class II fumarate hydratase | low | > 48 |
| Azospirillum brasilense Sp245 | 0.60 | AZOBR_RS01565 | | endonuclease III | 0.56 | AZOBR_RS06120 | | fumarate hydratase | low | > 97 |
| Azospirillum sp. SherDot2 | 0.59 | MPMX19_02500 | | Endonuclease III | 0.59 | MPMX19_01424 | | Fumarate hydratase class II | low | > 112 |
| Magnetospirillum magneticum AMB-1 | 0.59 | AMB_RS21105 | | endonuclease III | 0.71 | AMB_RS18480 | | class II fumarate hydratase | low | > 64 |
| Sphingomonas koreensis DSMZ 15582 | 0.57 | Ga0059261_2546 | | DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) | 0.52 | Ga0059261_1040 | | fumarase, class II (EC 4.2.1.2) | low | > 68 |
| Bosea sp. OAE506 | 0.57 | ABIE41_RS03410 | | endonuclease III | 0.53 | ABIE41_RS12805 | | class II fumarate hydratase | — | — |
| Dinoroseobacter shibae DFL-12 | 0.56 | Dshi_3023 | | endonuclease III (RefSeq) | 0.57 | Dshi_2334 | | fumarate hydratase, class II (RefSeq) | — | — |
| Phaeobacter inhibens DSM 17395 | 0.55 | PGA1_c29040 | | endonuclease III | 0.57 | PGA1_c13520 | | fumarate hydratase class II | — | — |
| Rhodospirillum rubrum S1H | 0.53 | Rru_A0153 | | Endonuclease III/Nth (NCBI) | 0.56 | Rru_A2129 | | Fumarate hydratase, class II (NCBI) | low | > 58 |
| Caulobacter crescentus NA1000 | 0.51 | CCNA_03847 | | endonuclease III | 0.56 | CCNA_02194 | | fumarate hydratase | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.51 | CCNA_03847 | | endonuclease III | 0.56 | CCNA_02194 | | fumarate hydratase | — | — |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.41 | ABZR88_RS16725 | | endonuclease III | 0.57 | ABZR88_RS20230 | | class II fumarate hydratase | — | — |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.41 | CA264_14955 | | endonuclease III | 0.60 | CA264_17145 | | class II fumarate hydratase | — | — |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.39 | Echvi_1263 | | endonuclease III | 0.59 | Echvi_1329 | | fumarate hydratase, class II | — | — |
| Phocaeicola vulgatus CL09T03C04 | 0.39 | HMPREF1058_RS15245 | | endonuclease III | 0.36 | HMPREF1058_RS06295 | | aspartate ammonia-lyase | low | > 67 |
| Bacteroides stercoris CC31F | 0.38 | HMPREF1181_RS05445 | | endonuclease III | 0.35 | HMPREF1181_RS11250 | | aspartate ammonia-lyase | low | > 56 |
| Phocaeicola dorei CL03T12C01 | 0.38 | ABI39_RS11275 | | endonuclease III | 0.36 | ABI39_RS20055 | | aspartate ammonia-lyase | low | > 72 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.37 | BT1671 | | endonuclease III (NCBI ptt file) | 0.36 | BT2755 | | aspartate ammonia-lyase (NCBI ptt file) | low | > 81 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.37 | CA265_RS00605 | | endonuclease III | 0.56 | CA265_RS23855 | | fumarate hydratase, class II | — | — |
| Bacteroides ovatus ATCC 8483 | 0.37 | BACOVA_04414 | | endonuclease III | 0.36 | BACOVA_01069 | | aspartate ammonia-lyase | low | > 94 |
| Synechococcus elongatus PCC 7942 | 0.32 | Synpcc7942_0447 | nth | DNA-(apurinic or apyrimidinic site) lyase / endonuclease III | 0.55 | Synpcc7942_1007 | fumC | fumarate hydratase | low | > 38 |
| Bifidobacterium breve UCC2003 | 0.32 | BBR_RS11790 | | endonuclease III | 0.36 | BBR_RS12120 | | aspartate ammonia-lyase | low | > 34 |
| Alteromonas macleodii MIT1002 | 0.32 | MIT1002_01251 | | Endonuclease III | 0.39 | MIT1002_03167 | | Fumarate hydratase class II | low | > 70 |
| Mycobacterium tuberculosis H37Rv | 0.30 | Rv3674c | | Probable endonuclease III Nth (DNA-(apurinic or apyrimidinic site)lyase) (AP lyase) (AP endonuclease class I) (endodeoxyribonuclease (apurinic or apyrimidinic)) (deoxyribonuclease (apurinic or apyrimidinic)) | 0.43 | Rv1098c | | Probable fumarase Fum (fumarate hydratase) | — | — |
Not shown: 4 genomes with orthologs for HSERO_RS08070 only; 7 genomes with orthologs for HSERO_RS07610 only