Conservation of cofitness between PS417_27810 and PS417_04590 in Pseudomonas simiae WCS417

87 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_27810 ribonuclease PH 1.0 PS417_04590 methyltransferase 0.28 18
Pseudomonas fluorescens SBW25-INTG 1.00 PFLU_RS29490 ribonuclease PH 0.98 PFLU_RS04655 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 109
Pseudomonas fluorescens SBW25 1.00 PFLU_RS29490 ribonuclease PH 0.98 PFLU_RS04655 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.97 Psyr_0213 RNAse PH 0.87 Psyr_4112 Protein of unknown function UPF0011 low > 86
Pseudomonas syringae pv. syringae B728a 0.97 Psyr_0213 RNAse PH 0.87 Psyr_4112 Protein of unknown function UPF0011 low > 86
Pseudomonas fluorescens FW300-N1B4 0.97 Pf1N1B4_2117 Ribonuclease PH (EC 2.7.7.56) 0.90 Pf1N1B4_953 rRNA small subunit methyltransferase I — —
Pseudomonas fluorescens FW300-N2C3 0.97 AO356_12500 ribonuclease PH 0.90 AO356_17110 methyltransferase low > 104
Pseudomonas fluorescens FW300-N2E2 0.97 Pf6N2E2_4365 Ribonuclease PH (EC 2.7.7.56) 0.90 Pf6N2E2_5346 rRNA small subunit methyltransferase I low > 103
Pseudomonas fluorescens FW300-N2E3 0.97 AO353_09260 ribonuclease PH 0.90 AO353_15290 methyltransferase low > 101
Pseudomonas sp. RS175 0.97 PFR28_04420 Ribonuclease PH 0.90 PFR28_03597 Ribosomal RNA small subunit methyltransferase I low > 88
Pseudomonas putida KT2440 0.95 PP_5294 Ribonuclease PH 0.80 PP_1326 16S rRNA 2'-O-ribose C1402 methyltransferase low > 96
Pseudomonas fluorescens GW456-L13 0.94 PfGW456L13_784 Ribonuclease PH (EC 2.7.7.56) 0.88 PfGW456L13_1643 rRNA small subunit methyltransferase I low > 87
Pseudomonas stutzeri RCH2 0.92 Psest_3813 ribonuclease PH 0.78 Psest_3270 probable S-adenosylmethionine-dependent methyltransferase, YraL family low > 67
Pseudomonas sp. S08-1 0.91 OH686_13570 ribonuclease PH 0.74 OH686_08340 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 80
Marinobacter adhaerens HP15 0.70 HP15_300 ribonuclease PH 0.52 HP15_554 tetrapyrrole methylase family protein low > 73
Kangiella aquimarina DSM 16071 0.70 B158DRAFT_0588 ribonuclease PH 0.47 B158DRAFT_2109 probable S-adenosylmethionine-dependent methyltransferase, YraL family low > 40
Dickeya dadantii 3937 0.69 DDA3937_RS20540 ribonuclease PH 0.52 DDA3937_RS01715 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 74
Dickeya dianthicola ME23 0.68 DZA65_RS00730 ribonuclease PH 0.52 DZA65_RS01685 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 75
Dickeya dianthicola 67-19 0.68 HGI48_RS00675 ribonuclease PH 0.52 HGI48_RS01610 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 71
Xanthomonas campestris pv. campestris strain 8004 0.68 Xcc-8004.1221.1 Ribonuclease PH (EC 2.7.7.56) 0.49 Xcc-8004.4371.1 rRNA small subunit methyltransferase I low > 74
Alteromonas macleodii MIT1002 0.68 MIT1002_04071 Ribonuclease PH 0.47 MIT1002_03113 Ribosomal RNA small subunit methyltransferase I low > 70
Acinetobacter radioresistens SK82 0.66 MPMX26_00040 Ribonuclease PH 0.51 MPMX26_02282 Ribosomal RNA small subunit methyltransferase I low > 36
Serratia liquefaciens MT49 0.66 IAI46_24850 ribonuclease PH 0.51 IAI46_22295 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 86
Shewanella loihica PV-4 0.66 Shew_3488 ribonuclease PH (RefSeq) 0.53 Shew_0228 uroporphyrin-III C/tetrapyrrole methyltransferase (RefSeq) low > 60
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.66 GFF366 Ribonuclease PH (EC 2.7.7.56) 0.52 GFF1521 rRNA small subunit methyltransferase I low > 78
Escherichia coli ECRC101 0.66 OKFHMN_15590 rph ribonuclease PH 0.53 OKFHMN_18235 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase — —
Escherichia coli ECOR27 0.66 NOLOHH_07470 rph ribonuclease PH 0.53 NOLOHH_10035 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 57
Escherichia coli ECRC98 0.66 JDDGAC_19215 rph ribonuclease PH 0.53 JDDGAC_21860 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase — —
Escherichia coli ECRC99 0.66 KEDOAH_12555 rph ribonuclease PH 0.53 KEDOAH_09915 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase — —
Escherichia coli ECRC102 0.66 NIAGMN_13350 rph ribonuclease PH 0.53 NIAGMN_15995 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase — —
Escherichia coli ECRC101 0.66 MCAODC_06100 rph ribonuclease PH 0.53 MCAODC_08755 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase — —
Rahnella sp. WP5 0.66 EX31_RS14505 ribonuclease PH 0.53 EX31_RS12550 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 89
Escherichia coli Nissle 1917 0.66 ECOLIN_RS20755 ribonuclease PH 0.53 ECOLIN_RS18085 16S rRNA (cytidine(1402)-2'-O)-methyltransferase — —
Shewanella amazonensis SB2B 0.66 Sama_0320 tRNA nucleotidyltransferase (RefSeq) 0.55 Sama_3353 hypothetical protein (RefSeq) low > 62
Escherichia fergusonii Becca 0.66 EFB2_00170 Ribonuclease PH 0.53 EFB2_00677 Ribosomal RNA small subunit methyltransferase I low > 86
Escherichia coli ECOR38 0.66 HEPCGN_14410 rph ribonuclease PH 0.53 HEPCGN_17110 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 85
Enterobacter sp. TBS_079 0.66 MPMX20_00092 Ribonuclease PH 0.52 MPMX20_04050 Ribosomal RNA small subunit methyltransferase I low > 85
Escherichia coli BL21 0.66 ECD_03500 ribonuclease PH 0.53 ECD_03013 16S rRNA C1402 2'-O-ribose methyltransferase, SAM-dependent low > 60
Escherichia coli ECRC62 0.66 BNILDI_04045 rph ribonuclease PH 0.53 BNILDI_01495 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase — —
Enterobacter asburiae PDN3 0.66 EX28DRAFT_3893 ribonuclease PH 0.52 EX28DRAFT_3195 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.66 OHPLBJKB_00059 Ribonuclease PH 0.53 OHPLBJKB_00555 Ribosomal RNA small subunit methyltransferase I low > 73
Paraburkholderia sabiae LMG 24235 0.65 QEN71_RS03645 ribonuclease PH 0.42 QEN71_RS00655 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.76 105
Shewanella oneidensis MR-1 0.65 SO4256 rph ribonuclease PH (NCBI ptt file) 0.52 SO0301 hypothetical methyltransferase (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.65 Shewana3_3777 RNAse PH (RefSeq) 0.52 Shewana3_3879 hypothetical protein (RefSeq) low > 73
Pectobacterium carotovorum WPP14 0.65 HER17_RS20855 ribonuclease PH 0.52 HER17_RS19860 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 75
Klebsiella michiganensis M5al 0.65 BWI76_RS27390 ribonuclease PH 0.51 BWI76_RS24910 rRNA (cytidine-2'-O-)-methyltransferase low > 92
Herbaspirillum seropedicae SmR1 0.65 HSERO_RS10655 ribonuclease PH 0.47 HSERO_RS23345 16S rRNA methyltransferase low > 78
Pantoea sp. MT58 0.65 IAI47_00595 ribonuclease PH 0.50 IAI47_02850 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 76
Erwinia tracheiphila SCR3 0.65 LU632_RS22020 rph ribonuclease PH 0.55 LU632_RS02230 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 74
Dyella japonica UNC79MFTsu3.2 0.64 ABZR86_RS11900 ribonuclease PH 0.54 ABZR86_RS11380 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 74
Burkholderia phytofirmans PsJN 0.64 BPHYT_RS15325 ribonuclease PH 0.39 BPHYT_RS01940 16S rRNA methyltransferase low > 109
Escherichia coli BW25113 0.64 b3643 rph ribonuclease PH (NCBI) 0.53 b3146 yraL predicted methyltransferase (NCBI) low > 76
Paraburkholderia graminis OAS925 0.64 ABIE53_003234 ribonuclease PH 0.35 ABIE53_000470 16S rRNA (cytidine1402-2'-O)-methyltransferase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.64 H281DRAFT_04008 RNAse PH 0.37 H281DRAFT_02152 16S rRNA (cytidine1402-2'-O)-methyltransferase low > 103
Dechlorosoma suillum PS 0.64 Dsui_0494 ribonuclease PH 0.47 Dsui_0251 putative S-adenosylmethionine-dependent methyltransferase, YraL family low > 51
Lysobacter sp. OAE881 0.63 ABIE51_RS17285 ribonuclease PH 0.49 ABIE51_RS04695 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 62
Ralstonia solanacearum IBSBF1503 0.63 RALBFv3_RS03345 ribonuclease PH 0.36 RALBFv3_RS08495 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 76
Vibrio cholerae E7946 ATCC 55056 0.63 CSW01_01115 ribonuclease PH 0.53 CSW01_03090 rRNA (cytidine-2'-O-)-methyltransferase low > 62
Ralstonia solanacearum UW163 0.63 UW163_RS10375 ribonuclease PH 0.36 UW163_RS05115 16S rRNA (cytidine(1402)-2'-O)-methyltransferase — —
Ralstonia solanacearum PSI07 0.63 RPSI07_RS13840 ribonuclease PH 0.35 RPSI07_RS08730 16S rRNA (cytidine(1402)-2'-O)-methyltransferase — —
Ralstonia sp. UNC404CL21Col 0.63 ABZR87_RS15255 ribonuclease PH 0.35 ABZR87_RS03815 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 80
Rhizobium sp. OAE497 0.62 ABIE40_RS01640 ribonuclease PH 0.36 ABIE40_RS01370 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 107
Ralstonia solanacearum GMI1000 0.62 RS_RS10830 ribonuclease PH 0.35 RS_RS16360 16S rRNA (cytidine(1402)-2'-O)-methyltransferase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.62 GFF3254 Ribonuclease PH (EC 2.7.7.56) 0.32 GFF2715 rRNA small subunit methyltransferase I low > 90
Cupriavidus basilensis FW507-4G11 0.62 RR42_RS04890 ribonuclease PH 0.35 RR42_RS19740 16S rRNA methyltransferase low > 128
Rhodanobacter denitrificans FW104-10B01 0.62 LRK54_RS11745 ribonuclease PH 0.51 LRK54_RS12190 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 59
Rhodanobacter denitrificans MT42 0.62 LRK55_RS11470 ribonuclease PH 0.51 LRK55_RS11925 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 63
Sinorhizobium meliloti 1021 0.62 SMc01144 ribonuclease PH 0.36 SMc00416 hypothetical protein low > 103
Rhodanobacter sp. FW510-T8 0.62 OKGIIK_12150 rph ribonuclease PH 0.51 OKGIIK_11735 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase — —
Variovorax sp. SCN45 0.61 GFF2381 Ribonuclease PH (EC 2.7.7.56) 0.33 GFF3735 16S rRNA (cytidine(1402)-2'-O)-methyltransferase (EC 2.1.1.198) low > 127
Agrobacterium fabrum C58 0.61 Atu0327 ribonuclease PH 0.36 Atu0302 tetrapyrrole methylase family protein — —
Variovorax sp. OAS795 0.60 ABID97_RS23640 ribonuclease PH 0.34 ABID97_RS00285 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 91
Bosea sp. OAE506 0.59 ABIE41_RS03295 ribonuclease PH 0.37 ABIE41_RS03315 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.42 59
Rhodospirillum rubrum S1H 0.59 Rru_A3641 Ribonuclease PH (NCBI) 0.26 Rru_A3693 Protein of unknown function UPF0011 (NCBI) low > 58
Azospirillum brasilense Sp245 0.58 AZOBR_RS02205 ribonuclease PH 0.34 AZOBR_RS02155 16S rRNA methyltransferase 0.31 56
Acidovorax sp. GW101-3H11 0.58 Ac3H11_3670 Ribonuclease PH (EC 2.7.7.56) 0.35 Ac3H11_4466 rRNA small subunit methyltransferase I — —
Castellaniella sp019104865 MT123 0.58 ABCV34_RS03515 ribonuclease PH 0.37 ABCV34_RS14320 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 48
Rhodopseudomonas palustris CGA009 0.57 TX73_001710 ribonuclease PH 0.34 TX73_001680 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 86
Dinoroseobacter shibae DFL-12 0.56 Dshi_3463 ribonuclease PH (RefSeq) 0.33 Dshi_2831 Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase (RefSeq) low > 64
Azospirillum sp. SherDot2 0.56 MPMX19_02576 Ribonuclease PH 0.34 MPMX19_02471 Ribosomal RNA small subunit methyltransferase I 0.44 57
Phaeobacter inhibens DSM 17395 0.55 PGA1_c35030 ribonuclease PH 0.26 PGA1_c26730 probable S-adenosylmethionine-dependent methyltransferase, YraL family low > 62
Brevundimonas sp. GW460-12-10-14-LB2 0.54 A4249_RS13125 ribonuclease PH 0.30 A4249_RS13300 16S rRNA (cytidine(1402)-2'-O)-methyltransferase — —
Magnetospirillum magneticum AMB-1 0.54 AMB_RS22760 ribonuclease PH 0.34 AMB_RS22780 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 64
Caulobacter crescentus NA1000 Δfur 0.52 CCNA_00151 ribonuclease PH 0.32 CCNA_00143 ribosomal RNA small subunit methyltransferase I low > 67
Caulobacter crescentus NA1000 0.52 CCNA_00151 ribonuclease PH 0.32 CCNA_00143 ribosomal RNA small subunit methyltransferase I low > 66
Mycobacterium tuberculosis H37Rv 0.51 Rv1340 Probable ribonuclease RphA (RNase PH) (tRNA nucleotidyltransferase) 0.25 Rv1003 Conserved protein — —
Sphingomonas koreensis DSMZ 15582 0.49 Ga0059261_2741 ribonuclease PH 0.29 Ga0059261_2755 16S rRNA (cytidine(1402)-2'-O)-methyltransferase — —
Synechococcus elongatus PCC 7942 0.49 Synpcc7942_1073 rph ribonuclease PH 0.40 Synpcc7942_0174 hypothetical protein low > 38

Not shown: 1 genomes with orthologs for PS417_27810 only; 1 genomes with orthologs for PS417_04590 only