Conservation of cofitness between Psest_3320 and Psest_3318 in Pseudomonas stutzeri RCH2

86 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_3320 Predicted Zn-dependent proteases and their inactivated homologs 1.0 Psest_3318 Predicted Zn-dependent proteases and their inactivated homologs 0.46 1
Pseudomonas syringae pv. syringae B728a ΔmexB 0.81 Psyr_4156 microcin-processing peptidase 2, Unknown type peptidase, MEROPS family U62 0.81 Psyr_4154 microcin-processing peptidase 1, Unknown type peptidase, MEROPS family U62 0.36 10
Pseudomonas putida KT2440 0.81 PP_0940 putative protease involved in Microcin B17 maturation and in sensitivity to the DNA gyrase inhibitor LetD 0.81 PP_0942 regulatory protease 0.57 1
Pseudomonas syringae pv. syringae B728a 0.81 Psyr_4156 microcin-processing peptidase 2, Unknown type peptidase, MEROPS family U62 0.81 Psyr_4154 microcin-processing peptidase 1, Unknown type peptidase, MEROPS family U62 0.38 9
Pseudomonas fluorescens FW300-N2E3 0.80 AO353_05215 protease TldD 0.81 AO353_05205 peptidase PmbA 0.83 1
Pseudomonas fluorescens SBW25 0.80 PFLU_RS04340 metalloprotease TldD 0.81 PFLU_RS04350 metalloprotease PmbA 0.48 48
Pseudomonas fluorescens SBW25-INTG 0.80 PFLU_RS04340 metalloprotease TldD 0.81 PFLU_RS04350 metalloprotease PmbA 0.69 1
Pseudomonas simiae WCS417 0.80 PS417_04285 protease TldD 0.80 PS417_04295 peptidase PmbA 0.64 1
Pseudomonas fluorescens FW300-N2E2 0.80 Pf6N2E2_3280 TldD protein, part of TldE/TldD proteolytic complex 0.82 Pf6N2E2_3278 TldE protein, part of TldE/TldD proteolytic complex 0.71 1
Pseudomonas fluorescens GW456-L13 0.80 PfGW456L13_5026 TldD protein, part of TldE/TldD proteolytic complex 0.80 PfGW456L13_5024 TldE protein, part of TldE/TldD proteolytic complex low > 87
Pseudomonas fluorescens FW300-N2C3 0.80 AO356_07095 protease TldD 0.81 AO356_07085 peptidase PmbA 0.75 1
Pseudomonas fluorescens FW300-N1B4 0.80 Pf1N1B4_1092 TldD protein, part of TldE/TldD proteolytic complex 0.80 Pf1N1B4_1090 TldE protein, part of TldE/TldD proteolytic complex 0.39 2
Pseudomonas sp. S08-1 0.79 OH686_08580 TldD protein, part of TldE/TldD proteolytic complex 0.79 OH686_08570 TldE protein, part of TldE/TldD proteolytic complex 0.63 61
Pseudomonas sp. RS175 0.79 PFR28_00161 Metalloprotease TldD 0.82 PFR28_00163 Metalloprotease PmbA 0.68 1
Pantoea sp. MT58 0.67 IAI47_02465 metalloprotease TldD 0.48 IAI47_02765 metalloprotease PmbA 0.93 1
Dickeya dadantii 3937 0.66 DDA3937_RS01460 metalloprotease TldD 0.47 DDA3937_RS01500 metalloprotease PmbA 0.91 1
Dickeya dianthicola 67-19 0.66 HGI48_RS01380 metalloprotease TldD 0.47 HGI48_RS01415 metalloprotease PmbA low > 71
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.66 GFF2140 TldD protein, part of TldE/TldD proteolytic complex 0.48 GFF904 TldE protein, part of TldE/TldD proteolytic complex 0.53 7
Dyella japonica UNC79MFTsu3.2 0.65 ABZR86_RS21715 metalloprotease TldD 0.47 ABZR86_RS21700 metalloprotease PmbA 0.53 6
Dickeya dianthicola ME23 0.65 DZA65_RS01440 metalloprotease TldD 0.47 DZA65_RS01480 metalloprotease PmbA low > 75
Shewanella sp. ANA-3 0.65 Shewana3_3641 microcin-processing peptidase 2 (RefSeq) 0.51 Shewana3_3631 microcin-processing peptidase 1 (RefSeq) 0.56 2
Lysobacter sp. OAE881 0.65 ABIE51_RS06795 metalloprotease TldD 0.49 ABIE51_RS06805 metalloprotease PmbA 0.62 39
Alteromonas macleodii MIT1002 0.65 MIT1002_00227 protease TldD 0.49 MIT1002_00230 peptidase PmbA 0.80 1
Serratia liquefaciens MT49 0.65 IAI46_22685 metalloprotease TldD 0.49 IAI46_22575 metalloprotease PmbA 0.55 15
Rhodanobacter sp. FW510-T8 0.65 OKGIIK_10280 tldD metalloprotease TldD 0.50 OKGIIK_10260 pmbA metalloprotease PmbA 0.68 10
Klebsiella michiganensis M5al 0.64 BWI76_RS25470 metalloprotease TldD 0.49 BWI76_RS02850 metalloprotease PmbA low > 92
Escherichia coli ECOR27 0.64 NOLOHH_09555 tldD metalloprotease TldD 0.48 NOLOHH_04185 pmbA metalloprotease PmbA low > 75
Escherichia coli BW25113 0.64 b3244 tldD predicted peptidase (NCBI) 0.48 b4235 pmbA predicted peptidase required for the maturation and secretion of the antibiotic peptide MccB17 (NCBI) 0.75 1
Escherichia coli ECRC102 0.64 NIAGMN_15515 tldD metalloprotease TldD 0.48 NIAGMN_09775 pmbA metalloprotease PmbA — —
Escherichia coli ECRC101 0.64 MCAODC_08275 tldD metalloprotease TldD 0.48 MCAODC_02430 pmbA metalloprotease PmbA low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.64 OHPLBJKB_00460 Metalloprotease TldD 0.48 OHPLBJKB_03800 Metalloprotease PmbA low > 73
Escherichia coli ECRC99 0.64 KEDOAH_10395 tldD metalloprotease TldD 0.48 KEDOAH_16230 pmbA metalloprotease PmbA — —
Escherichia coli ECRC98 0.64 JDDGAC_21380 tldD metalloprotease TldD 0.48 JDDGAC_15565 pmbA metalloprotease PmbA low > 86
Shewanella loihica PV-4 0.64 Shew_0410 peptidase U62, modulator of DNA gyrase (RefSeq) 0.50 Shew_0416 peptidase U62, modulator of DNA gyrase (RefSeq) 0.65 3
Escherichia coli Nissle 1917 0.64 ECOLIN_RS18595 metalloprotease TldD 0.49 ECOLIN_RS24570 metalloprotease PmbA low > 55
Escherichia coli ECRC100 0.64 OKFHMN_17755 tldD metalloprotease TldD 0.48 OKFHMN_11925 pmbA metalloprotease PmbA 0.96 3
Escherichia coli BL21 0.64 ECD_03104 putative peptidase 0.48 ECD_04103 putative antibiotic peptide MccB17 maturation peptidase 0.74 2
Escherichia fergusonii Becca 0.64 EFB2_00586 Metalloprotease TldD 0.49 EFB2_04298 Metalloprotease PmbA low > 86
Escherichia coli ECOR38 0.64 HEPCGN_16620 tldD metalloprotease TldD 0.48 HEPCGN_10125 pmbA metalloprotease PmbA low > 87
Escherichia coli ECRC62 0.64 BNILDI_01980 tldD metalloprotease TldD 0.48 BNILDI_07325 pmbA metalloprotease PmbA low > 75
Xanthomonas campestris pv. campestris strain 8004 0.64 Xcc-8004.1883.1 TldD protein, part of TldE/TldD proteolytic complex 0.50 Xcc-8004.1885.1 TldE protein, part of TldE/TldD proteolytic complex 0.76 1
Enterobacter sp. TBS_079 0.64 MPMX20_04151 Metalloprotease TldD 0.49 MPMX20_00517 Metalloprotease PmbA 0.31 13
Pectobacterium carotovorum WPP14 0.64 HER17_RS20140 metalloprotease TldD 0.50 HER17_RS20090 metalloprotease PmbA low > 75
Enterobacter asburiae PDN3 0.63 EX28DRAFT_3295 Predicted Zn-dependent proteases and their inactivated homologs 0.49 EX28DRAFT_3422 Predicted Zn-dependent proteases and their inactivated homologs low > 76
Erwinia tracheiphila SCR3 0.63 LU632_RS21420 tldD metalloprotease TldD 0.47 LU632_RS02145 pmbA metalloprotease PmbA 0.75 25
Rahnella sp. WP5 0.63 EX31_RS12265 metalloprotease TldD 0.50 EX31_RS12320 metalloprotease PmbA 0.30 78
Rhodanobacter denitrificans MT42 0.63 LRK55_RS03145 metalloprotease TldD 0.50 LRK55_RS03125 metalloprotease PmbA 0.69 42
Rhodanobacter denitrificans FW104-10B01 0.63 LRK54_RS03395 metalloprotease TldD 0.50 LRK54_RS03375 metalloprotease PmbA 0.96 1
Shewanella oneidensis MR-1 0.62 SO4091 tldD tldD protein (NCBI ptt file) 0.51 SO4078 pmbA pmba protein (NCBI ptt file) 0.65 1
Kangiella aquimarina DSM 16071 0.62 B158DRAFT_2072 microcin-processing peptidase 2. Unknown type peptidase. MEROPS family U62 0.41 B158DRAFT_2075 microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62 0.48 1
Vibrio cholerae E7946 ATCC 55056 0.61 CSW01_02220 metalloprotease TldD 0.49 CSW01_12845 metalloprotease PmbA 0.89 4
Shewanella amazonensis SB2B 0.61 Sama_0474 TldD protein (RefSeq) 0.52 Sama_0482 PmbA protein (RefSeq) 0.89 1
Cupriavidus basilensis FW507-4G11 0.61 RR42_RS05875 protease TldD 0.45 RR42_RS14750 peptidase PMbA 0.67 1
Ralstonia sp. UNC404CL21Col 0.60 ABZR87_RS01105 metalloprotease TldD 0.44 ABZR87_RS09660 metalloprotease PmbA 0.78 1
Ralstonia solanacearum GMI1000 0.60 RS_RS13315 metalloprotease TldD 0.43 RS_RS04700 metalloprotease PmbA 0.58 18
Ralstonia solanacearum IBSBF1503 0.59 RALBFv3_RS05455 metalloprotease TldD 0.45 RALBFv3_RS13965 metalloprotease PmbA 0.80 4
Ralstonia solanacearum UW163 0.59 UW163_RS08170 metalloprotease TldD 0.45 UW163_RS15845 metalloprotease PmbA — —
Acidovorax sp. GW101-3H11 0.59 Ac3H11_4036 TldD protein, part of TldE/TldD proteolytic complex 0.43 Ac3H11_3262 TldE protein, part of TldE/TldD proteolytic complex 0.36 33
Paraburkholderia bryophila 376MFSha3.1 0.59 H281DRAFT_04688 microcin-processing peptidase 2. Unknown type peptidase. MEROPS family U62 0.46 H281DRAFT_04304 microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62 0.51 1
Paraburkholderia graminis OAS925 0.59 ABIE53_000851 TldD protein 0.46 ABIE53_003116 PmbA protein 0.68 1
Ralstonia solanacearum PSI07 0.59 RPSI07_RS11850 metalloprotease TldD 0.45 RPSI07_RS19505 metalloprotease PmbA low > 81
Herbaspirillum seropedicae SmR1 0.59 HSERO_RS07155 peptidase C69 0.45 HSERO_RS09265 peptidase C69 0.46 1
Variovorax sp. OAS795 0.59 ABID97_RS06335 metalloprotease TldD 0.45 ABID97_RS20695 metalloprotease PmbA 0.93 1
Burkholderia phytofirmans PsJN 0.58 BPHYT_RS03540 peptidase C69 0.45 BPHYT_RS14705 peptidase C69 0.27 34
Dechlorosoma suillum PS 0.58 Dsui_3401 putative Zn-dependent protease-like protein 0.49 Dsui_1234 putative Zn-dependent protease-like protein 0.84 3
Paraburkholderia sabiae LMG 24235 0.58 QEN71_RS26555 metalloprotease TldD 0.46 QEN71_RS04270 metalloprotease PmbA 0.87 30
Hydrogenophaga sp. GW460-11-11-14-LB1 0.58 GFF580 TldD protein, part of TldE/TldD proteolytic complex 0.41 GFF3655 TldE protein, part of TldE/TldD proteolytic complex 0.93 1
Variovorax sp. SCN45 0.58 GFF4449 TldD protein, part of TldE/TldD proteolytic complex 0.46 GFF4697 TldE protein, part of TldE/TldD proteolytic complex 0.83 104
Castellaniella sp019104865 MT123 0.58 ABCV34_RS02590 metalloprotease TldD 0.45 ABCV34_RS10610 metalloprotease PmbA low > 48
Rhodospirillum rubrum S1H 0.56 Rru_A0567 Peptidase U62, modulator of DNA gyrase (NCBI) 0.25 Rru_A0575 Peptidase U62, modulator of DNA gyrase (NCBI) 0.64 1
Magnetospirillum magneticum AMB-1 0.53 AMB_RS21030 metalloprotease TldD 0.27 AMB_RS22120 TldD/PmbA family protein low > 64
Sphingomonas koreensis DSMZ 15582 0.52 Ga0059261_2252 Predicted Zn-dependent proteases and their inactivated homologs 0.28 Ga0059261_0810 Predicted Zn-dependent proteases and their inactivated homologs low > 68
Rhizobium sp. OAE497 0.52 ABIE40_RS04050 metalloprotease TldD 0.26 ABIE40_RS03780 TldD/PmbA family protein 0.95 3
Azospirillum sp. SherDot2 0.52 MPMX19_00882 Metalloprotease TldD 0.32 MPMX19_01886 Metalloprotease PmbA 0.54 16
Azospirillum brasilense Sp245 0.52 AZOBR_RS10600 peptidase C69 0.32 AZOBR_RS11930 modulator protein 0.79 1
Caulobacter crescentus NA1000 Δfur 0.52 CCNA_03522 Zn-dependent protease TldD 0.25 CCNA_00311 Zn-dependent protease family protein low > 67
Caulobacter crescentus NA1000 0.52 CCNA_03522 Zn-dependent protease TldD 0.25 CCNA_00311 Zn-dependent protease family protein 0.92 1
Rhodopseudomonas palustris CGA009 0.51 TX73_004255 metalloprotease TldD 0.27 TX73_005930 TldD/PmbA family protein 0.71 1
Agrobacterium fabrum C58 0.51 Atu0765 TldD 0.25 Atu0693 PmbA/TldD related protein 0.28 5
Sinorhizobium meliloti 1021 0.50 SMc00960 hypothetical protein 0.26 SMc00897 PMBA protein 0.49 1
Brevundimonas sp. GW460-12-10-14-LB2 0.49 A4249_RS10860 metalloprotease TldD 0.23 A4249_RS09195 TldD/PmbA family protein low > 48
Dinoroseobacter shibae DFL-12 0.48 Dshi_1139 peptidase U62 modulator of DNA gyrase (RefSeq) 0.28 Dshi_0064 peptidase U62 modulator of DNA gyrase (RefSeq) low > 64
Phaeobacter inhibens DSM 17395 0.48 PGA1_c06240 protein TldD 0.29 PGA1_c33480 protein PmbA — —
Bacteroides thetaiotaomicron VPI-5482 0.36 BT3648 putative modulator of DNA gyrase (NCBI ptt file) 0.19 BT3649 putative modulator of DNA gyrase (NCBI ptt file) 0.22 10
Parabacteroides merdae CL09T00C40 0.36 HMPREF1078_RS03620 TldD/PmbA family protein 0.17 HMPREF1078_RS03625 TldD/PmbA family protein 0.84 1
Bacteroides stercoris CC31F 0.36 HMPREF1181_RS03165 TldD/PmbA family protein 0.17 HMPREF1181_RS03170 TldD/PmbA family protein low > 56
Synechococcus elongatus PCC 7942 0.23 Synpcc7942_1127 tldD microcin-processing peptidase 2. Unknown type peptidase. MEROPS family U62 0.09 Synpcc7942_1289 pmbA putative modulator of DNA gyrase 0.97 1

Not shown: 4 genomes with orthologs for Psest_3320 only; 0 genomes with orthologs for Psest_3318 only