Conservation of cofitness between HP15_3225 and HP15_2486 in Marinobacter adhaerens HP15

87 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Marinobacter adhaerens HP15 1.0 HP15_3225 tRNA-dihydrouridine synthase B 1.0 HP15_2486 biotin synthase 0.53 16
Pseudomonas stutzeri RCH2 0.69 Psest_1016 putative TIM-barrel protein, nifR3 family 0.71 Psest_0411 biotin synthetase low > 67
Pseudomonas fluorescens FW300-N2E2 0.68 Pf6N2E2_3517 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.71 Pf6N2E2_4759 Biotin synthase (EC 2.8.1.6) low > 103
Pseudomonas fluorescens FW300-N2C3 0.68 AO356_08215 tRNA-dihydrouridine synthase B 0.71 AO356_14135 biotin synthase low > 104
Pseudomonas sp. S08-1 0.68 OH686_07610 tRNA-dihydrouridine synthase DusB 0.71 OH686_10355 biotin synthase low > 80
Pseudomonas sp. RS175 0.68 PFR28_05216 tRNA-dihydrouridine synthase B 0.72 PFR28_04103 Biotin synthase low > 88
Pseudomonas putida KT2440 0.67 PP_4820 tRNA-dihydrouridine synthase B 0.73 PP_0362 Biotin synthase low > 96
Pseudomonas fluorescens SBW25 0.67 PFLU_RS03025 tRNA dihydrouridine synthase DusB 0.71 PFLU_RS27650 biotin synthase BioB low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.67 Psyr_4404 tRNA-U20-dihydrouridine synthase 0.73 Psyr_4687 biotin synthase low > 86
Pseudomonas syringae pv. syringae B728a 0.67 Psyr_4404 tRNA-U20-dihydrouridine synthase 0.73 Psyr_4687 biotin synthase low > 86
Pseudomonas fluorescens SBW25-INTG 0.67 PFLU_RS03025 tRNA dihydrouridine synthase DusB 0.71 PFLU_RS27650 biotin synthase BioB low > 109
Pseudomonas simiae WCS417 0.67 PS417_02950 tRNA-dihydrouridine synthase B 0.71 PS417_26005 biotin synthase low > 88
Pseudomonas fluorescens FW300-N1B4 0.66 Pf1N1B4_1313 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.71 Pf1N1B4_2487 Biotin synthase (EC 2.8.1.6) low > 87
Pseudomonas fluorescens GW456-L13 0.66 PfGW456L13_55 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.71 PfGW456L13_1147 Biotin synthase (EC 2.8.1.6) low > 87
Pseudomonas fluorescens FW300-N2E3 0.66 AO353_13660 tRNA-dihydrouridine synthase B 0.71 AO353_07525 biotin synthase low > 101
Kangiella aquimarina DSM 16071 0.65 B158DRAFT_0164 tRNA-U20-dihydrouridine synthase 0.69 B158DRAFT_0864 biotin synthase (EC 2.8.1.6) — —
Alteromonas macleodii MIT1002 0.63 MIT1002_03957 putative tRNA-dihydrouridine synthase 0.69 MIT1002_01379 Biotin synthase 0.59 24
Dechlorosoma suillum PS 0.60 Dsui_1593 putative TIM-barrel protein, nifR3 family 0.55 Dsui_1297 biotin synthetase low > 51
Herbaspirillum seropedicae SmR1 0.60 HSERO_RS02050 tRNA-dihydrouridine synthase B 0.54 HSERO_RS12235 biotin synthase low > 78
Paraburkholderia sabiae LMG 24235 0.60 QEN71_RS26770 tRNA dihydrouridine synthase DusB 0.60 QEN71_RS01085 biotin synthase BioB — —
Rhodanobacter denitrificans FW104-10B01 0.60 LRK54_RS12140 tRNA dihydrouridine synthase DusB 0.57 LRK54_RS10260 biotin synthase BioB low > 59
Dyella japonica UNC79MFTsu3.2 0.60 ABZR86_RS11525 tRNA dihydrouridine synthase DusB 0.61 ABZR86_RS15840 biotin synthase BioB low > 74
Rhodanobacter sp. FW510-T8 0.60 OKGIIK_11770 dusB tRNA dihydrouridine synthase DusB 0.56 OKGIIK_13650 bioB biotin synthase BioB low > 52
Rhodanobacter denitrificans MT42 0.59 LRK55_RS11875 tRNA dihydrouridine synthase DusB 0.57 LRK55_RS09900 biotin synthase BioB low > 63
Paraburkholderia bryophila 376MFSha3.1 0.59 H281DRAFT_04249 tRNA-U20-dihydrouridine synthase 0.59 H281DRAFT_02097 biotin synthase low > 103
Ralstonia sp. UNC404CL21Col 0.59 ABZR87_RS07650 tRNA dihydrouridine synthase DusB 0.60 ABZR87_RS06265 biotin synthase BioB low > 80
Ralstonia solanacearum PSI07 0.59 RPSI07_RS21520 tRNA dihydrouridine synthase DusB 0.60 RPSI07_RS22850 biotin synthase BioB low > 81
Lysobacter sp. OAE881 0.59 ABIE51_RS16450 tRNA dihydrouridine synthase DusB 0.62 ABIE51_RS01140 biotin synthase BioB low > 62
Variovorax sp. OAS795 0.58 ABID97_RS24735 tRNA dihydrouridine synthase DusB 0.52 ABID97_RS13955 biotin synthase BioB low > 91
Ralstonia solanacearum GMI1000 0.58 RS_RS02515 tRNA dihydrouridine synthase DusB 0.60 RS_RS01305 biotin synthase low > 80
Variovorax sp. SCN45 0.58 GFF2144 tRNA-dihydrouridine synthase DusB 0.53 GFF937 Biotin synthase (EC 2.8.1.6) low > 127
Ralstonia solanacearum IBSBF1503 0.58 RALBFv3_RS11695 tRNA dihydrouridine synthase DusB 0.59 RALBFv3_RS10465 biotin synthase BioB low > 76
Vibrio cholerae E7946 ATCC 55056 0.58 CSW01_01495 tRNA dihydrouridine synthase DusB 0.67 CSW01_05645 biotin synthase low > 62
Ralstonia solanacearum UW163 0.58 UW163_RS01890 tRNA dihydrouridine synthase DusB 0.59 UW163_RS03115 biotin synthase BioB — —
Rahnella sp. WP5 0.58 EX31_RS12180 tRNA dihydrouridine synthase DusB 0.64 EX31_RS23695 biotin synthase BioB low > 89
Paraburkholderia graminis OAS925 0.57 ABIE53_003489 tRNA-dihydrouridine synthase B 0.59 ABIE53_000577 biotin synthase low > 113
Enterobacter sp. TBS_079 0.57 MPMX20_04169 tRNA-dihydrouridine synthase B 0.64 MPMX20_01403 Biotin synthase low > 85
Dickeya dianthicola 67-19 0.57 HGI48_RS01295 tRNA dihydrouridine synthase DusB 0.64 HGI48_RS08675 biotin synthase BioB low > 71
Serratia liquefaciens MT49 0.57 IAI46_22775 tRNA dihydrouridine synthase DusB 0.64 IAI46_06525 biotin synthase BioB low > 86
Dickeya dadantii 3937 0.57 DDA3937_RS01375 tRNA dihydrouridine synthase DusB 0.65 DDA3937_RS08510 biotin synthase BioB low > 74
Dickeya dianthicola ME23 0.57 DZA65_RS01355 tRNA dihydrouridine synthase DusB 0.64 DZA65_RS08965 biotin synthase BioB low > 75
Pectobacterium carotovorum WPP14 0.57 HER17_RS20235 tRNA dihydrouridine synthase DusB 0.64 HER17_RS13460 biotin synthase BioB low > 75
Escherichia coli ECRC101 0.57 OKFHMN_17685 dusB tRNA dihydrouridine synthase DusB 0.64 OKFHMN_06400 bioB biotin synthase BioB — —
Escherichia coli BL21 0.57 ECD_03118 tRNA-dihydrouridine synthase B 0.65 ECD_00742 biotin synthase low > 60
Escherichia fergusonii Becca 0.57 EFB2_00564 tRNA-dihydrouridine synthase B 0.65 EFB2_03330 Biotin synthase low > 86
Escherichia coli Nissle 1917 0.57 ECOLIN_RS18725 tRNA dihydrouridine synthase DusB 0.65 ECOLIN_RS04130 biotin synthase BioB — —
Escherichia coli ECRC62 0.57 BNILDI_02050 dusB tRNA dihydrouridine synthase DusB 0.65 BNILDI_21040 bioB biotin synthase BioB — —
Escherichia coli ECRC101 0.57 MCAODC_08205 dusB tRNA dihydrouridine synthase DusB 0.64 MCAODC_25615 bioB biotin synthase BioB — —
Escherichia coli ECOR27 0.57 NOLOHH_09470 dusB tRNA dihydrouridine synthase DusB 0.65 NOLOHH_22770 bioB biotin synthase BioB low > 57
Escherichia coli BW25113 0.57 b3260 dusB tRNA-dihydrouridine synthase B (NCBI) 0.65 b0775 bioB biotin synthase (NCBI) low > 76
Escherichia coli ECRC102 0.57 NIAGMN_15445 dusB tRNA dihydrouridine synthase DusB 0.64 NIAGMN_04445 bioB biotin synthase BioB — —
Escherichia coli ECOR38 0.57 HEPCGN_16505 dusB tRNA dihydrouridine synthase DusB 0.65 HEPCGN_01640 bioB biotin synthase BioB low > 85
Shewanella amazonensis SB2B 0.57 Sama_3225 tRNA-dihydrouridine synthase B (RefSeq) 0.70 Sama_1438 biotin synthase (RefSeq) — —
Burkholderia phytofirmans PsJN 0.57 BPHYT_RS16585 tRNA-dihydrouridine synthase B 0.58 BPHYT_RS02150 biotin synthase low > 109
Klebsiella michiganensis M5al 0.56 BWI76_RS25565 tRNA dihydrouridine synthase DusB 0.65 BWI76_RS08760 biotin synthase — —
Cupriavidus basilensis FW507-4G11 0.56 RR42_RS02730 tRNA-dihydrouridine synthase B 0.58 RR42_RS00940 biotin synthase low > 128
Enterobacter asburiae PDN3 0.56 EX28DRAFT_3313 putative TIM-barrel protein, nifR3 family 0.64 EX28DRAFT_2216 biotin synthase (EC 2.8.1.6) low > 76
Hydrogenophaga sp. GW460-11-11-14-LB1 0.55 GFF634 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.57 GFF3992 Biotin synthase (EC 2.8.1.6) low > 90
Pantoea sp. MT58 0.55 IAI47_02385 tRNA dihydrouridine synthase DusB 0.64 IAI47_13530 biotin synthase BioB low > 76
Shewanella oneidensis MR-1 0.55 SO0394 conserved hypothetical protein (NCBI ptt file) 0.68 SO2740 bioB biotin synthase (NCBI ptt file) — —
Castellaniella sp019104865 MT123 0.55 ABCV34_RS07960 tRNA dihydrouridine synthase DusB 0.57 ABCV34_RS15280 biotin synthase BioB low > 48
Shewanella loihica PV-4 0.54 Shew_0330 nifR3 family TIM-barrel protein (RefSeq) 0.68 Shew_1719 biotin synthase (RefSeq) — —
Shewanella sp. ANA-3 0.54 Shewana3_0399 nifR3 family TIM-barrel protein (RefSeq) 0.68 Shewana3_2519 biotin synthase (RefSeq) low > 73
Acinetobacter radioresistens SK82 0.53 MPMX26_02127 tRNA-dihydrouridine synthase B 0.61 MPMX26_01785 Biotin synthase low > 36
Acidovorax sp. GW101-3H11 0.53 Ac3H11_3996 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.54 Ac3H11_2272 Biotin synthase (EC 2.8.1.6) low > 79
Escherichia coli ECRC99 0.51 KEDOAH_10465 dusB tRNA dihydrouridine synthase DusB 0.64 KEDOAH_21510 bioB biotin synthase BioB — —
Escherichia coli ECRC98 0.51 JDDGAC_21310 dusB tRNA dihydrouridine synthase DusB 0.64 JDDGAC_10035 bioB biotin synthase BioB — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.50 OHPLBJKB_00445 putative tRNA-dihydrouridine synthase 0.65 OHPLBJKB_02938 Biotin synthase low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.49 GFF2124 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.64 GFF671 Biotin synthase (EC 2.8.1.6) low > 78
Magnetospirillum magneticum AMB-1 0.45 AMB_RS11940 tRNA dihydrouridine synthase DusB 0.59 AMB_RS13865 biotin synthase — —
Sphingomonas koreensis DSMZ 15582 0.41 Ga0059261_0140 tRNA-U20-dihydrouridine synthase 0.57 Ga0059261_3989 biotin synthase (EC 2.8.1.6) low > 68
Agrobacterium fabrum C58 0.38 Atu1444 nitrogen regulation protein 0.58 Atu3997 biotin synthetase low > 89
Rhizobium sp. OAE497 0.37 ABIE40_RS09080 tRNA dihydrouridine synthase DusB 0.57 ABIE40_RS21075 biotin synthase BioB low > 107
Phaeobacter inhibens DSM 17395 0.37 PGA1_c14770 tRNA-dihydrouridine synthase DusB 0.58 PGA1_c09120 biotin synthase BioB 0.40 18
Rhodopseudomonas palustris CGA009 0.35 TX73_013410 tRNA dihydrouridine synthase DusB 0.56 TX73_010535 biotin synthase BioB low > 86
Pedobacter sp. GW460-11-11-14-LB5 0.34 CA265_RS21125 tRNA dihydrouridine synthase DusB 0.49 CA265_RS09475 biotin synthase BioB low > 88
Pontibacter actiniarum KMM 6156, DSM 19842 0.33 CA264_17860 tRNA dihydrouridine synthase DusB 0.52 CA264_02425 biotin synthase BioB low > 74
Parabacteroides merdae CL09T00C40 0.33 HMPREF1078_RS05375 tRNA dihydrouridine synthase DusB 0.26 HMPREF1078_RS15300 biotin synthase BioB low > 61
Mucilaginibacter yixingensis YX-36 DSM 26809 0.33 ABZR88_RS22340 tRNA dihydrouridine synthase DusB 0.49 ABZR88_RS10190 biotin synthase BioB low > 71
Echinicola vietnamensis KMM 6221, DSM 17526 0.32 Echvi_1531 putative TIM-barrel protein, nifR3 family 0.55 Echvi_2566 biotin synthetase low > 79
Phocaeicola vulgatus CL09T03C04 0.32 HMPREF1058_RS10945 tRNA dihydrouridine synthase DusB 0.23 HMPREF1058_RS17950 biotin synthase BioB low > 67
Caulobacter crescentus NA1000 Δfur 0.30 CCNA_01813 tRNA-dihydrouridine synthase 0.55 CCNA_03636 biotin synthase low > 67
Caulobacter crescentus NA1000 0.30 CCNA_01813 tRNA-dihydrouridine synthase 0.55 CCNA_03636 biotin synthase low > 66
Mycobacterium tuberculosis H37Rv 0.28 Rv0823c Possible transcriptional regulatory protein 0.26 Rv1589 Probable biotin synthetase BioB low > 58
Synechococcus elongatus PCC 7942 0.24 Synpcc7942_0283 Dihydrouridine synthase TIM-barrel protein nifR3 0.50 Synpcc7942_0419 bioB biotin synthase — —
Fusobacterium nucleatum SB010 0.23 HUW76_04330 tRNA-dihydrouridine synthase 0.25 HUW76_05115 biotin synthase BioB low > 35
Desulfovibrio vulgaris Hildenborough JW710 0.21 DVU0661 dihydrouridine synthase family protein (TIGR) 0.24 DVU2558 bioB biotin synthase (Dmitry Rodionov) low > 55
Desulfovibrio vulgaris Miyazaki F 0.20 DvMF_2019 dihydrouridine synthase DuS (RefSeq) 0.22 DvMF_1001 biotin synthase (RefSeq) low > 51

Not shown: 10 genomes with orthologs for HP15_3225 only; 4 genomes with orthologs for HP15_2486 only