Conservation of cofitness between HP15_604 and HP15_1718 in Marinobacter adhaerens HP15

88 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Marinobacter adhaerens HP15 1.0 HP15_604 conserved hypothetical protein CHP00246 1.0 HP15_1718 ATP-dependent DNA helicase RecQ 0.49 15
Dickeya dianthicola ME23 0.68 DZA65_RS06565 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.44 DZA65_RS21045 ATP-dependent DNA helicase RecQ low > 75
Dickeya dadantii 3937 0.68 DDA3937_RS06175 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.44 DDA3937_RS19850 ATP-dependent DNA helicase RecQ — —
Pectobacterium carotovorum WPP14 0.67 HER17_RS15240 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.43 HER17_RS01395 ATP-dependent DNA helicase RecQ low > 75
Rahnella sp. WP5 0.67 EX31_RS23125 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.43 EX31_RS15210 ATP-dependent DNA helicase RecQ low > 89
Serratia liquefaciens MT49 0.67 IAI46_05935 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.43 IAI46_00770 ATP-dependent DNA helicase RecQ low > 86
Dickeya dianthicola 67-19 0.67 HGI48_RS06220 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.44 HGI48_RS20005 ATP-dependent DNA helicase RecQ — —
Klebsiella michiganensis M5al 0.66 BWI76_RS08040 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.43 BWI76_RS01245 DNA helicase RecQ low > 92
Vibrio cholerae E7946 ATCC 55056 0.66 CSW01_04865 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.45 CSW01_01045 DNA helicase RecQ low > 62
Enterobacter sp. TBS_079 0.66 MPMX20_01295 Ribosomal RNA large subunit methyltransferase H 0.44 MPMX20_04458 ATP-dependent DNA helicase RecQ low > 85
Pantoea sp. MT58 0.66 IAI47_14020 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.44 IAI47_18360 ATP-dependent DNA helicase RecQ low > 76
Enterobacter asburiae PDN3 0.66 EX28DRAFT_2327 rRNA large subunit m3Psi methyltransferase RlmH 0.44 EX28DRAFT_4487 ATP-dependent DNA helicase RecQ — —
Escherichia coli BL21 0.66 ECD_00605 23S rRNA m(3)Psi1915 pseudouridine methyltransferase, SAM-dependent 0.43 ECD_03701 ATP-dependent DNA helicase — —
Escherichia coli Nissle 1917 0.66 ECOLIN_RS03465 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.43 ECOLIN_RS21935 ATP-dependent DNA helicase RecQ — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.66 OHPLBJKB_03070 Ribosomal RNA large subunit methyltransferase H 0.43 OHPLBJKB_04229 ATP-dependent DNA helicase RecQ — —
Erwinia tracheiphila SCR3 0.66 LU632_RS16370 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.43 LU632_RS24095 recQ ATP-dependent DNA helicase RecQ low > 74
Escherichia coli BW25113 0.66 b0636 ybeA hypothetical protein (NCBI) 0.43 b3822 recQ ATP-dependent DNA helicase (NCBI) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.65 GFF4549 LSU m3Psi1915 methyltransferase RlmH 0.42 GFF248 ATP-dependent DNA helicase RecQ low > 78
Escherichia fergusonii Becca 0.65 EFB2_03456 Ribosomal RNA large subunit methyltransferase H 0.43 EFB2_04815 ATP-dependent DNA helicase RecQ low > 86
Escherichia coli ECOR27 0.65 NOLOHH_23735 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.43 NOLOHH_06490 recQ ATP-dependent DNA helicase RecQ — —
Escherichia coli ECOR38 0.65 HEPCGN_00915 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.43 HEPCGN_13060 recQ ATP-dependent DNA helicase RecQ low > 85
Escherichia coli ECRC101 0.65 MCAODC_26575 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.43 MCAODC_04865 recQ ATP-dependent DNA helicase RecQ — —
Escherichia coli ECRC101 0.65 OKFHMN_07360 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.43 OKFHMN_14360 recQ ATP-dependent DNA helicase RecQ — —
Escherichia coli ECRC98 0.65 JDDGAC_11005 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.43 JDDGAC_17985 recQ ATP-dependent DNA helicase RecQ — —
Escherichia coli ECRC102 0.65 NIAGMN_05415 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.43 NIAGMN_12115 recQ ATP-dependent DNA helicase RecQ — —
Escherichia coli ECRC62 0.65 BNILDI_21745 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.43 BNILDI_05040 recQ ATP-dependent DNA helicase RecQ — —
Escherichia coli ECRC99 0.65 KEDOAH_20610 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.43 KEDOAH_13790 recQ ATP-dependent DNA helicase RecQ — —
Alteromonas macleodii MIT1002 0.64 MIT1002_01852 Ribosomal RNA large subunit methyltransferase H 0.44 MIT1002_00148 ATP-dependent DNA helicase RecQ — —
Pseudomonas sp. RS175 0.64 PFR28_03869 Ribosomal RNA large subunit methyltransferase H 0.58 PFR28_00788 ATP-dependent DNA helicase RecQ low > 88
Pseudomonas fluorescens FW300-N2C3 0.63 AO356_15305 50S rRNA methyltransferase 0.58 AO356_04050 ATP-dependent DNA helicase RecQ low > 104
Pseudomonas fluorescens SBW25 0.63 PFLU_RS26660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.57 PFLU_RS21920 DNA helicase RecQ low > 109
Pseudomonas fluorescens FW300-N1B4 0.63 Pf1N1B4_2691 LSU m3Psi1915 methyltransferase RlmH 0.58 Pf1N1B4_3533 ATP-dependent DNA helicase RecQ — —
Pseudomonas fluorescens FW300-N2E3 0.63 AO353_06480 50S rRNA methyltransferase 0.58 AO353_18430 ATP-dependent DNA helicase RecQ low > 101
Pseudomonas fluorescens FW300-N2E2 0.63 Pf6N2E2_4996 LSU m3Psi1915 methyltransferase RlmH 0.58 Pf6N2E2_2645 ATP-dependent DNA helicase RecQ low > 103
Pseudomonas fluorescens SBW25-INTG 0.63 PFLU_RS26660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.57 PFLU_RS21920 DNA helicase RecQ low > 109
Pseudomonas fluorescens GW456-L13 0.63 PfGW456L13_1359 LSU m3Psi1915 methyltransferase RlmH 0.58 PfGW456L13_4423 ATP-dependent DNA helicase RecQ low > 87
Pseudomonas simiae WCS417 0.63 PS417_24730 50S rRNA methyltransferase 0.57 PS417_19950 ATP-dependent DNA helicase RecQ — —
Pseudomonas sp. S08-1 0.63 OH686_09325 rRNA large subunit m3Psi methyltransferase RlmH 0.56 OH686_20670 ATP-dependent DNA helicase RecQ low > 80
Shewanella amazonensis SB2B 0.62 Sama_2587 rRNA large subunit methyltransferase (RefSeq) 0.43 Sama_0333 ATP-dependent DNA helicase RecQ (RefSeq) low > 62
Pseudomonas syringae pv. syringae B728a 0.61 Psyr_4366 Protein of unknown function DUF163 0.57 Psyr_3738 ATP-dependent DNA helicase RecQ — —
Shewanella loihica PV-4 0.61 Shew_2934 SPOUT methyltransferase superfamily protein (RefSeq) 0.44 Shew_3474 ATP-dependent DNA helicase RecQ (RefSeq) low > 60
Pseudomonas syringae pv. syringae B728a ΔmexB 0.61 Psyr_4366 Protein of unknown function DUF163 0.57 Psyr_3738 ATP-dependent DNA helicase RecQ low > 86
Pseudomonas putida KT2440 0.61 PP_4808 23S rRNA m3psi1915 methyltransferase 0.57 PP_4516 ATP-dependent DNA 3 low > 96
Shewanella oneidensis MR-1 0.61 SO1169 conserved hypothetical protein TIGR00246 (NCBI ptt file) 0.43 SO4241 recQ ATP-dependent DNA helicase RecQ (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.61 Shewana3_0996 rRNA large subunit methyltransferase (RefSeq) 0.43 Shewana3_3763 ATP-dependent DNA helicase RecQ (RefSeq) low > 73
Pseudomonas stutzeri RCH2 0.60 Psest_0511 rRNA large subunit m3Psi methyltransferase RlmH 0.56 Psest_1869 ATP-dependent DNA helicase RecQ low > 67
Rhodanobacter denitrificans FW104-10B01 0.56 LRK54_RS02695 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.56 LRK54_RS13000 DNA helicase RecQ low > 59
Rhodanobacter denitrificans MT42 0.56 LRK55_RS02450 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.57 LRK55_RS12700 DNA helicase RecQ low > 63
Rhodanobacter sp. FW510-T8 0.56 OKGIIK_09750 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.56 OKGIIK_02375 recQ DNA helicase RecQ low > 52
Dyella japonica UNC79MFTsu3.2 0.55 ABZR86_RS09055 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.55 ABZR86_RS19925 DNA helicase RecQ low > 74
Paraburkholderia sabiae LMG 24235 0.55 QEN71_RS24420 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.56 QEN71_RS28295 DNA helicase RecQ low > 153
Paraburkholderia bryophila 376MFSha3.1 0.54 H281DRAFT_04517 23S rRNA (pseudouridine1915-N3)-methyltransferase 0.56 H281DRAFT_06595 ATP-dependent DNA helicase RecQ — —
Paraburkholderia graminis OAS925 0.54 ABIE53_001541 23S rRNA (pseudouridine1915-N3)-methyltransferase 0.56 ABIE53_003792 ATP-dependent DNA helicase RecQ — —
Cupriavidus basilensis FW507-4G11 0.53 RR42_RS04710 50S rRNA methyltransferase 0.55 RR42_RS19310 ATP-dependent DNA helicase RecQ low > 128
Lysobacter sp. OAE881 0.53 ABIE51_RS06755 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.53 ABIE51_RS05145 DNA helicase RecQ low > 62
Burkholderia phytofirmans PsJN 0.53 BPHYT_RS06385 ribosomal RNA large subunit methyltransferase H 0.56 BPHYT_RS18145 ATP-dependent DNA helicase RecQ low > 109
Herbaspirillum seropedicae SmR1 0.50 HSERO_RS17780 50S rRNA methyltransferase 0.55 HSERO_RS02465 ATP-dependent DNA helicase RecQ low > 78
Ralstonia sp. UNC404CL21Col 0.48 ABZR87_RS15430 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.54 ABZR87_RS02880 DNA helicase RecQ low > 80
Ralstonia solanacearum UW163 0.48 UW163_RS10105 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.54 UW163_RS06400 DNA helicase RecQ — —
Ralstonia solanacearum PSI07 0.48 RPSI07_RS13660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.54 RPSI07_RS10025 DNA helicase RecQ low > 81
Ralstonia solanacearum GMI1000 0.48 RS_RS11015 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.55 RS_RS15155 DNA helicase RecQ — —
Ralstonia solanacearum IBSBF1503 0.48 RALBFv3_RS03565 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.54 RALBFv3_RS07220 DNA helicase RecQ low > 76
Castellaniella sp019104865 MT123 0.45 ABCV34_RS02530 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.52 ABCV34_RS07985 DNA helicase RecQ low > 48
Xanthomonas campestris pv. campestris strain 8004 0.45 Xcc-8004.1876.1 LSU m3Psi1915 methyltransferase RlmH 0.56 Xcc-8004.1476.1 ATP-dependent DNA helicase RecQ — —
Variovorax sp. SCN45 0.44 GFF298 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase (EC 2.1.1.177) 0.50 GFF6415 ATP-dependent DNA helicase RecQ low > 127
Dechlorosoma suillum PS 0.44 Dsui_0451 hypothetical protein 0.53 Dsui_3092 ATP-dependent DNA helicase RecQ low > 51
Variovorax sp. OAS795 0.44 ABID97_RS16715 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.52 ABID97_RS03395 DNA helicase RecQ low > 91
Acidovorax sp. GW101-3H11 0.43 Ac3H11_2418 LSU m3Psi1915 methyltransferase RlmH 0.48 Ac3H11_3308 ATP-dependent DNA helicase RecQ low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.43 GFF4529 LSU m3Psi1915 methyltransferase RlmH 0.50 GFF1958 ATP-dependent DNA helicase RecQ low > 90
Azospirillum brasilense Sp245 0.31 AZOBR_RS04060 50S rRNA methyltransferase 0.58 AZOBR_RS02840 ATP-dependent DNA helicase RecQ 0.35 87
Fusobacterium nucleatum SB010 0.30 HUW76_07715 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.31 HUW76_07235 DNA helicase RecQ low > 35
Azospirillum sp. SherDot2 0.30 MPMX19_01940 Ribosomal RNA large subunit methyltransferase H 0.57 MPMX19_00123 ATP-dependent DNA helicase RecQ low > 112
Parabacteroides merdae CL09T00C40 0.30 HMPREF1078_RS16715 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.40 HMPREF1078_RS01195 DNA helicase RecQ low > 61
Magnetospirillum magneticum AMB-1 0.30 AMB_RS20655 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.58 AMB_RS21505 DNA helicase RecQ low > 64
Pedobacter sp. GW460-11-11-14-LB5 0.28 CA265_RS16470 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.36 CA265_RS08905 DNA helicase RecQ low > 88
Phocaeicola vulgatus CL09T03C04 0.28 HMPREF1058_RS15935 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.40 HMPREF1058_RS14585 DNA helicase RecQ low > 67
Mucilaginibacter yixingensis YX-36 DSM 26809 0.27 ABZR88_RS17055 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.43 ABZR88_RS20865 DNA helicase RecQ low > 71
Phocaeicola dorei CL03T12C01 0.27 ABI39_RS11895 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.40 ABI39_RS10235 DNA helicase RecQ low > 72
Bifidobacterium breve UCC2003 0.26 BBR_RS19685 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.31 BBR_RS13150 DNA helicase RecQ low > 34
Bacteroides stercoris CC31F 0.26 HMPREF1181_RS10755 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.40 HMPREF1181_RS14110 DNA helicase RecQ low > 56
Rhodospirillum rubrum S1H 0.25 Rru_A1235 Protein of unknown function DUF163 (NCBI) 0.44 Rru_A0089 ATP-dependent DNA helicase RecQ (NCBI) low > 58
Bacteroides thetaiotaomicron VPI-5482 0.25 BT1562 conserved hypothetical protein (NCBI ptt file) 0.39 BT1848 ATP-dependent DNA helicase recQ (NCBI ptt file) 0.24 63
Bacteroides ovatus ATCC 8483 0.25 BACOVA_04305 putative rRNA large subunit m3Psi methyltransferase RlmH 0.38 BACOVA_04594 ATP-dependent DNA helicase RecQ low > 94
Brevundimonas sp. GW460-12-10-14-LB2 0.24 A4249_RS14825 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.39 A4249_RS14575 DNA helicase RecQ low > 48
Rhizobium sp. OAE497 0.24 ABIE40_RS18965 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.49 ABIE40_RS12745 DNA helicase RecQ low > 107
Sinorhizobium meliloti 1021 0.23 SMc03781 rRNA large subunit methyltransferase 0.49 SMc01566 ATP-dependent DNA helicase low > 103
Rhodopseudomonas palustris CGA009 0.22 TX73_000870 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.55 TX73_025080 DNA helicase RecQ low > 86
Caulobacter crescentus NA1000 Δfur 0.21 CCNA_03546 rRNA large subunit methyltransferase 0.35 CCNA_03578 ATP-dependent DNA helicase recQ low > 67
Caulobacter crescentus NA1000 0.21 CCNA_03546 rRNA large subunit methyltransferase 0.35 CCNA_03578 ATP-dependent DNA helicase recQ low > 66

Not shown: 4 genomes with orthologs for HP15_604 only; 7 genomes with orthologs for HP15_1718 only