| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 1.0 | GFF2390 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) ## SSU rRNA m5C967 | 1.0 | GFF1059 | | ABC transporter, ATP-binding protein | 0.84 | 10 |
| Escherichia coli ECOR38 | 0.90 | HEPCGN_16350 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.98 | HEPCGN_09180 | ettA | energy-dependent translational throttle protein EttA | low | > 87 |
| Escherichia coli ECOR27 | 0.90 | NOLOHH_09320 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.98 | NOLOHH_03505 | ettA | energy-dependent translational throttle protein EttA | low | > 75 |
| Escherichia coli ECRC62 | 0.90 | BNILDI_02200 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.98 | BNILDI_08090 | ettA | energy-dependent translational throttle protein EttA | low | > 75 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.90 | OHPLBJKB_00415 | | Ribosomal RNA small subunit methyltransferase B | 0.98 | OHPLBJKB_03670 | | Energy-dependent translational throttle protein EttA | low | > 73 |
| Escherichia coli BL21 | 0.90 | ECD_03139 | | 16S rRNA m(5)C967 methyltransferase, SAM-dependent | 0.98 | ECD_04267 | | energy-dependent translational throttle A | low | > 61 |
| Escherichia coli ECRC98 | 0.90 | JDDGAC_21150 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.98 | JDDGAC_14770 | ettA | energy-dependent translational throttle protein EttA | low | > 86 |
| Escherichia coli BW25113 | 0.90 | b3289 | rsmB | 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent (NCBI) | 0.98 | b4391 | yjjK | fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) | low | > 76 |
| Escherichia coli ECRC99 | 0.90 | KEDOAH_10620 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.98 | KEDOAH_16980 | ettA | energy-dependent translational throttle protein EttA | — | — |
| Escherichia coli ECRC101 | 0.90 | MCAODC_08050 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.98 | MCAODC_01690 | ettA | energy-dependent translational throttle protein EttA | low | > 87 |
| Escherichia coli ECRC102 | 0.90 | NIAGMN_15290 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.98 | NIAGMN_09025 | ettA | energy-dependent translational throttle protein EttA | — | — |
| Escherichia coli ECRC100 | 0.90 | OKFHMN_17520 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.98 | OKFHMN_11175 | ettA | energy-dependent translational throttle protein EttA | 0.81 | 38 |
| Escherichia fergusonii Becca | 0.90 | EFB2_00535 | | Ribosomal RNA small subunit methyltransferase B | 0.98 | EFB2_04053 | | Energy-dependent translational throttle protein EttA | low | > 86 |
| Escherichia coli Nissle 1917 | 0.90 | ECOLIN_RS18875 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.98 | ECOLIN_RS25205 | | energy-dependent translational throttle protein EttA | low | > 55 |
| Klebsiella michiganensis M5al | 0.88 | BWI76_RS25680 | | 16S rRNA m5C967 methyltransferase | 0.97 | BWI76_RS04175 | | energy-dependent translational throttle protein EttA | low | > 92 |
| Enterobacter asburiae PDN3 | 0.85 | EX28DRAFT_0039 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase | 0.96 | EX28DRAFT_3601 | | ATP-binding cassette protein, ChvD family | low | > 76 |
| Enterobacter sp. TBS_079 | 0.83 | MPMX20_04196 | | Ribosomal RNA small subunit methyltransferase B | 0.97 | MPMX20_00698 | | Energy-dependent translational throttle protein EttA | low | > 85 |
| Serratia liquefaciens MT49 | 0.74 | IAI46_23275 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.95 | IAI46_02965 | | energy-dependent translational throttle protein EttA | low | > 86 |
| Dickeya dianthicola ME23 | 0.71 | DZA65_RS20350 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.92 | DZA65_RS19530 | | energy-dependent translational throttle protein EttA | low | > 75 |
| Dickeya dianthicola 67-19 | 0.71 | HGI48_RS19225 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.92 | HGI48_RS18390 | | energy-dependent translational throttle protein EttA | low | > 71 |
| Pantoea sp. MT58 | 0.71 | IAI47_02280 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.95 | IAI47_16325 | | energy-dependent translational throttle protein EttA | low | > 76 |
| Dickeya dadantii 3937 | 0.71 | DDA3937_RS19135 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.92 | DDA3937_RS18460 | | energy-dependent translational throttle protein EttA | low | > 74 |
| Rahnella sp. WP5 | 0.71 | EX31_RS15985 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.94 | EX31_RS04000 | | energy-dependent translational throttle protein EttA | low | > 89 |
| Pectobacterium carotovorum WPP14 | 0.71 | HER17_RS02215 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.95 | HER17_RS02745 | | energy-dependent translational throttle protein EttA | low | > 75 |
| Erwinia tracheiphila SCR3 | 0.70 | LU632_RS22480 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.95 | LU632_RS02565 | ettA | energy-dependent translational throttle protein EttA | low | > 74 |
| Vibrio cholerae E7946 ATCC 55056 | 0.59 | CSW01_00225 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.81 | CSW01_03650 | | energy-dependent translational throttle protein EttA | low | > 62 |
| Shewanella amazonensis SB2B | 0.49 | Sama_0041 | | sun protein (RefSeq) | 0.83 | Sama_1013 | | putative ABC transporter ATP-binding protein (RefSeq) | low | > 62 |
| Shewanella loihica PV-4 | 0.49 | Shew_3738 | | sun protein (RefSeq) | 0.83 | Shew_1183 | | putative ABC transporter ATP-binding protein (RefSeq) | low | > 60 |
| Shewanella sp. ANA-3 | 0.49 | Shewana3_0033 | | sun protein (RefSeq) | 0.84 | Shewana3_1093 | | putative ABC transporter ATP-binding protein (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.49 | SO0030 | sun | sun protein (NCBI ptt file) | 0.83 | SO3472 | | ABC transporter, ATP-binding protein (NCBI ptt file) | low | > 76 |
| Alteromonas macleodii MIT1002 | 0.43 | MIT1002_00018 | | Ribosomal RNA small subunit methyltransferase B | 0.78 | MIT1002_02704 | | putative ABC transporter ATP-binding protein | low | > 70 |
| Pseudomonas stutzeri RCH2 | 0.43 | Psest_0021 | | ribosomal RNA small subunit methyltransferase RsmB | 0.75 | Psest_3433 | | ATP-binding cassette protein, ChvD family | low | > 67 |
| Pseudomonas sp. S08-1 | 0.41 | OH686_12525 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase | 0.76 | OH686_16240 | | Energy-dependent translational throttle protein EttA | low | > 80 |
| Pseudomonas fluorescens FW300-N2E2 | 0.41 | Pf6N2E2_4121 | | Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) | 0.75 | Pf6N2E2_5084 | | Glutathione-regulated potassium-efflux system ATP-binding protein | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.41 | AO356_11275 | | 16S rRNA methyltransferase | 0.75 | AO356_15735 | | ABC transporter ATP-binding protein | low | > 104 |
| Pseudomonas fluorescens FW300-N2E3 | 0.41 | AO353_10630 | | 16S rRNA methyltransferase | 0.75 | AO353_14030 | | ABC transporter ATP-binding protein | low | > 101 |
| Pseudomonas syringae pv. syringae B728a | 0.41 | Psyr_0017 | | 16S rRNA m(5)C-967 methyltransferase | 0.75 | Psyr_4264 | | ABC transporter | low | > 86 |
| Marinobacter adhaerens HP15 | 0.41 | HP15_3742 | | Fmu, rRNA SAM-dependent methyltransferase | 0.76 | HP15_488 | | ABC transporter ATP-binding protein-like protein | low | > 73 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.41 | Psyr_0017 | | 16S rRNA m(5)C-967 methyltransferase | 0.75 | Psyr_4264 | | ABC transporter | low | > 86 |
| Pseudomonas sp. RS175 | 0.41 | PFR28_04663 | | Ribosomal RNA small subunit methyltransferase B | 0.75 | PFR28_03784 | | Energy-dependent translational throttle protein EttA | low | > 88 |
| Pseudomonas fluorescens SBW25 | 0.41 | PFLU_RS00080 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.75 | PFLU_RS26180 | | energy-dependent translational throttle protein EttA | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.41 | PFLU_RS00080 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.75 | PFLU_RS26180 | | energy-dependent translational throttle protein EttA | low | > 109 |
| Pseudomonas fluorescens GW456-L13 | 0.41 | PfGW456L13_652 | | Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) | 0.75 | PfGW456L13_1453 | | Glutathione-regulated potassium-efflux system ATP-binding protein | low | > 87 |
| Pseudomonas simiae WCS417 | 0.40 | PS417_00085 | | 16S rRNA methyltransferase | 0.75 | PS417_24265 | | ABC transporter ATP-binding protein | low | > 88 |
| Pseudomonas putida KT2440 | 0.40 | PP_0066 | | Ribosomal RNA small subunit methyltransferase B | 0.76 | PP_0674 | | ADP/ATP ratio sensor and inhibitor of translation | low | > 96 |
| Kangiella aquimarina DSM 16071 | 0.36 | B158DRAFT_0396 | | ribosomal RNA small subunit methyltransferase RsmB | 0.73 | B158DRAFT_0881 | | ATP-binding cassette protein, ChvD family | low | > 40 |
| Lysobacter sp. OAE881 | 0.35 | ABIE51_RS02255 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.73 | ABIE51_RS04610 | | energy-dependent translational throttle protein EttA | — | — |
| Dechlorosoma suillum PS | 0.34 | Dsui_0812 | | ribosomal RNA small subunit methyltransferase RsmB | 0.70 | Dsui_2746 | | ATP-binding cassette protein, ChvD family | low | > 51 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.32 | Xcc-8004.4741.1 | | hypothetical protein | 0.71 | Xcc-8004.4400.1 | | ABC transporter, ATP-binding protein | — | — |
| Rhodanobacter sp. FW510-T8 | 0.32 | OKGIIK_13790 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.74 | OKGIIK_11445 | ettA | energy-dependent translational throttle protein EttA | low | > 52 |
| Dyella japonica UNC79MFTsu3.2 | 0.32 | ABZR86_RS13890 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.75 | ABZR86_RS10725 | | energy-dependent translational throttle protein EttA | — | — |
| Acinetobacter radioresistens SK82 | 0.32 | MPMX26_03021 | | Ribosomal RNA small subunit methyltransferase B | 0.72 | MPMX26_02832 | | Energy-dependent translational throttle protein EttA | low | > 36 |
| Ralstonia solanacearum PSI07 | 0.32 | RPSI07_RS23575 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.74 | RPSI07_RS10585 | | energy-dependent translational throttle protein EttA | low | > 81 |
| Ralstonia sp. UNC404CL21Col | 0.31 | ABZR87_RS04950 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.74 | ABZR87_RS02310 | | energy-dependent translational throttle protein EttA | low | > 80 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.31 | H281DRAFT_02237 | | 16S rRNA (cytosine967-C5)-methyltransferase | 0.74 | H281DRAFT_05699 | | sulfate-transporting ATPase | low | > 103 |
| Paraburkholderia sabiae LMG 24235 | 0.31 | QEN71_RS00175 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.74 | QEN71_RS27625 | | energy-dependent translational throttle protein EttA | low | > 153 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.31 | GFF1789 | | Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) | 0.72 | GFF3531 | | ABC transporter | low | > 90 |
| Burkholderia phytofirmans PsJN | 0.31 | BPHYT_RS01475 | | 16S rRNA methyltransferase | 0.74 | BPHYT_RS17480 | | ABC transporter ATP-binding protein | low | > 109 |
| Paraburkholderia graminis OAS925 | 0.30 | ABIE53_000392 | | 16S rRNA (cytosine967-C5)-methyltransferase | 0.74 | ABIE53_003656 | | sulfate-transporting ATPase | low | > 113 |
| Ralstonia solanacearum GMI1000 | 0.30 | RS_RS00375 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.74 | RS_RS14590 | | energy-dependent translational throttle protein EttA | low | > 80 |
| Castellaniella sp019104865 MT123 | 0.30 | ABCV34_RS14225 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.73 | ABCV34_RS08155 | | energy-dependent translational throttle protein EttA | low | > 48 |
| Rhodanobacter denitrificans FW104-10B01 | 0.30 | LRK54_RS10125 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.73 | LRK54_RS04630 | | energy-dependent translational throttle protein EttA | low | > 59 |
| Ralstonia solanacearum IBSBF1503 | 0.30 | RALBFv3_RS09790 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.74 | RALBFv3_RS06640 | | energy-dependent translational throttle protein EttA | low | > 76 |
| Rhodanobacter denitrificans MT42 | 0.30 | LRK55_RS09765 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.73 | LRK55_RS04405 | | energy-dependent translational throttle protein EttA | — | — |
| Ralstonia solanacearum UW163 | 0.30 | UW163_RS03790 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.74 | UW163_RS06985 | | energy-dependent translational throttle protein EttA | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.29 | RR42_RS20450 | | 16S rRNA methyltransferase | 0.73 | RR42_RS18575 | | ABC transporter ATP-binding protein | low | > 128 |
| Herbaspirillum seropedicae SmR1 | 0.28 | HSERO_RS00355 | | methyltransferase | 0.73 | HSERO_RS23550 | | ABC transporter ATP-binding protein | low | > 78 |
| Synechococcus elongatus PCC 7942 | 0.27 | Synpcc7942_0962 | sun | sun protein | 0.30 | Synpcc7942_1381 | | ATPase | low | > 38 |
| Acidovorax sp. GW101-3H11 | 0.27 | Ac3H11_4461 | | Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) | 0.69 | Ac3H11_387 | | ABC transporter ATP-binding protein | — | — |
| Variovorax sp. SCN45 | 0.25 | GFF5878 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) | 0.70 | GFF6780 | | Energy-dependent translational throttle protein EttA | low | > 127 |
| Rhodopseudomonas palustris CGA009 | 0.22 | TX73_000155 | | transcription antitermination factor NusB | 0.56 | TX73_018705 | | energy-dependent translational throttle protein EttA | 0.44 | 5 |
| Caulobacter crescentus NA1000 | 0.22 | CCNA_00101 | | 16S rRNA m5C methyltransferase RsmB | 0.58 | CCNA_02231 | | ABC transporter ATP-binding protein | — | — |
| Azospirillum sp. SherDot2 | 0.22 | MPMX19_02327 | | Ribosomal RNA small subunit methyltransferase B | 0.61 | MPMX19_00626 | | Energy-dependent translational throttle protein EttA | low | > 112 |
| Caulobacter crescentus NA1000 Δfur | 0.22 | CCNA_00101 | | 16S rRNA m5C methyltransferase RsmB | 0.58 | CCNA_02231 | | ABC transporter ATP-binding protein | — | — |
| Azospirillum brasilense Sp245 | 0.22 | AZOBR_RS00235 | | MFS transporter | 0.60 | AZOBR_RS09515 | | heme ABC transporter ATP-binding protein | low | > 97 |
| Bosea sp. OAE506 | 0.22 | ABIE41_RS05105 | | RsmB/NOP family class I SAM-dependent RNA methyltransferase | 0.54 | ABIE41_RS12400 | | energy-dependent translational throttle protein EttA | low | > 77 |
| Magnetospirillum magneticum AMB-1 | 0.21 | AMB_RS00745 | | MFS transporter | 0.59 | AMB_RS04455 | | energy-dependent translational throttle protein EttA | low | > 64 |
| Rhodospirillum rubrum S1H | 0.21 | Rru_A3660 | | tRNA and rRNA cytosine-C5-methylase (NCBI) | 0.60 | Rru_A1527 | | ABC transporter component (NCBI) | low | > 58 |
| Agrobacterium fabrum C58 | 0.21 | Atu2825 | | Sun protein | 0.53 | Atu2125 | | ABC transporter, nucleotide binding/ATPase protein | low | > 89 |
| Rhizobium sp. OAE497 | 0.21 | ABIE40_RS19140 | | RsmB/NOP family class I SAM-dependent RNA methyltransferase | 0.53 | ABIE40_RS11960 | | energy-dependent translational throttle protein EttA | low | > 107 |
| Dinoroseobacter shibae DFL-12 | 0.19 | Dshi_3033 | | Fmu (Sun) domain protein (RefSeq) | 0.59 | Dshi_2197 | | ABC transporter related (RefSeq) | low | > 64 |
| Phaeobacter inhibens DSM 17395 | 0.19 | PGA1_c32880 | | putative ribosomal RNA small subunit methyltransferase B | 0.58 | PGA1_c26300 | | ABC transporter, ATP-binding protein | low | > 62 |
| Fusobacterium nucleatum SB010 | 0.19 | HUW76_07955 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.29 | HUW76_00125 | | ATP-binding cassette domain-containing protein | low | > 35 |
| Sphingomonas koreensis DSMZ 15582 | 0.18 | Ga0059261_2239 | | tRNA and rRNA cytosine-C5-methylases | 0.57 | Ga0059261_0048 | | ATP-binding cassette protein, ChvD family | — | — |
| Mycobacterium tuberculosis H37Rv | 0.15 | Rv1407 | | Probable Fmu protein (sun protein) | 0.52 | Rv2477c | | Probable macrolide-transport ATP-binding protein ABC transporter | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.15 | A4249_RS13165 | | RsmB/NOP family class I SAM-dependent RNA methyltransferase | 0.56 | A4249_RS07905 | | energy-dependent translational throttle protein EttA | — | — |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.13 | DVU3363 | sun | sun protein (TIGR) | 0.58 | DVU2586 | | ABC transporter, ATP-binding protein (TIGR) | low | > 55 |
| Desulfovibrio vulgaris Miyazaki F | 0.12 | DvMF_2042 | | NusB/RsmB/TIM44 (RefSeq) | 0.58 | DvMF_1058 | | putative ABC transporter ATP-binding protein (RefSeq) | low | > 51 |
Not shown: 2 genomes with orthologs for GFF2390 only; 12 genomes with orthologs for GFF1059 only