Conservation of cofitness between ECD_03871 and ECD_02583 in Escherichia coli BL21

92 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_03871 phosphomethylpyrimidine synthase 1.0 ECD_02583 methyl-directed mismatch repair protein low > 61
Escherichia coli ECRC101 0.99 MCAODC_03875 thiC phosphomethylpyrimidine synthase ThiC 1.00 MCAODC_11050 mutS DNA mismatch repair protein MutS low > 87
Escherichia coli ECRC99 0.99 KEDOAH_14785 thiC phosphomethylpyrimidine synthase ThiC 1.00 KEDOAH_07610 mutS DNA mismatch repair protein MutS — —
Escherichia coli ECRC98 0.99 JDDGAC_17000 thiC phosphomethylpyrimidine synthase ThiC 1.00 JDDGAC_24190 mutS DNA mismatch repair protein MutS low > 86
Escherichia coli ECRC100 0.99 OKFHMN_13375 thiC phosphomethylpyrimidine synthase ThiC 1.00 OKFHMN_20525 mutS DNA mismatch repair protein MutS low > 80
Escherichia coli ECRC102 0.99 NIAGMN_11125 thiC phosphomethylpyrimidine synthase ThiC 1.00 NIAGMN_18295 mutS DNA mismatch repair protein MutS — —
Escherichia coli ECOR27 0.99 NOLOHH_05520 thiC phosphomethylpyrimidine synthase ThiC 1.00 NOLOHH_12370 mutS DNA mismatch repair protein MutS low > 75
Escherichia coli Nissle 1917 0.99 ECOLIN_RS23040 phosphomethylpyrimidine synthase ThiC 0.99 ECOLIN_RS15275 DNA mismatch repair protein MutS low > 55
Escherichia coli ECRC62 0.99 BNILDI_06005 thiC phosphomethylpyrimidine synthase ThiC 1.00 BNILDI_10920 mutS DNA mismatch repair protein MutS low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_04056 Phosphomethylpyrimidine synthase 1.00 OHPLBJKB_01000 DNA mismatch repair protein MutS low > 73
Escherichia coli BW25113 0.99 b3994 thiC thiamine biosynthesis protein ThiC (NCBI) 1.00 b2733 mutS DNA mismatch repair protein (NCBI) low > 76
Escherichia coli ECOR38 0.99 HEPCGN_12010 thiC phosphomethylpyrimidine synthase ThiC 0.99 HEPCGN_19705 mutS DNA mismatch repair protein MutS low > 87
Escherichia fergusonii Becca 0.99 EFB2_04617 Phosphomethylpyrimidine synthase 0.98 EFB2_01179 DNA mismatch repair protein MutS low > 86
Enterobacter sp. TBS_079 0.95 MPMX20_00217 Phosphomethylpyrimidine synthase 0.92 MPMX20_03619 DNA mismatch repair protein MutS low > 85
Enterobacter asburiae PDN3 0.95 EX28DRAFT_4536 phosphomethylpyrimidine synthase 0.92 EX28DRAFT_2829 DNA mismatch repair protein MutS low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.95 GFF4198 Thiamin biosynthesis protein ThiC 0.93 GFF4773 DNA mismatch repair protein MutS low > 78
Klebsiella michiganensis M5al 0.93 BWI76_RS01555 phosphomethylpyrimidine synthase ThiC 0.92 BWI76_RS22600 DNA mismatch repair protein MutS low > 92
Pectobacterium carotovorum WPP14 0.87 HER17_RS20380 phosphomethylpyrimidine synthase ThiC 0.84 HER17_RS16220 DNA mismatch repair protein MutS low > 75
Rahnella sp. WP5 0.86 EX31_RS16815 phosphomethylpyrimidine synthase ThiC 0.84 EX31_RS07820 DNA mismatch repair protein MutS low > 89
Dickeya dianthicola ME23 0.85 DZA65_RS01215 phosphomethylpyrimidine synthase ThiC 0.85 DZA65_RS05570 DNA mismatch repair protein MutS low > 75
Dickeya dadantii 3937 0.85 DDA3937_RS01175 phosphomethylpyrimidine synthase ThiC 0.85 DDA3937_RS05230 DNA mismatch repair protein MutS low > 74
Serratia liquefaciens MT49 0.84 IAI46_01320 phosphomethylpyrimidine synthase ThiC 0.85 IAI46_03800 DNA mismatch repair protein MutS low > 86
Pantoea sp. MT58 0.84 IAI47_18085 phosphomethylpyrimidine synthase ThiC 0.82 IAI47_04240 DNA mismatch repair protein MutS low > 76
Dickeya dianthicola 67-19 0.84 HGI48_RS01170 phosphomethylpyrimidine synthase ThiC 0.85 HGI48_RS05230 DNA mismatch repair protein MutS low > 71
Erwinia tracheiphila SCR3 0.83 LU632_RS00970 thiC phosphomethylpyrimidine synthase ThiC 0.84 LU632_RS06485 mutS DNA mismatch repair protein MutS low > 74
Shewanella loihica PV-4 0.77 Shew_2096 thiamine biosynthesis protein ThiC (RefSeq) 0.66 Shew_1214 DNA mismatch repair protein (RefSeq) low > 60
Shewanella amazonensis SB2B 0.77 Sama_1860 thiamine biosynthesis protein ThiC (RefSeq) 0.65 Sama_1045 DNA mismatch repair protein MutS (RefSeq) low > 62
Shewanella oneidensis MR-1 0.75 SO2445 thiC thiamin biosynthesis protein ThiC (NCBI ptt file) 0.65 SO3431 mutS DNA mismatch repair protein MutS (NCBI ptt file) low > 76
Alteromonas macleodii MIT1002 0.75 MIT1002_00097 Phosphomethylpyrimidine synthase 0.63 MIT1002_00953 DNA mismatch repair protein MutS low > 70
Shewanella sp. ANA-3 0.74 Shewana3_1936 thiamine biosynthesis protein ThiC (RefSeq) 0.67 Shewana3_1125 DNA mismatch repair protein MutS (RefSeq) low > 73
Vibrio cholerae E7946 ATCC 55056 0.74 CSW01_00335 phosphomethylpyrimidine synthase 0.71 CSW01_02840 DNA mismatch repair protein MutS low > 62
Pseudomonas sp. RS175 0.72 PFR28_05091 Phosphomethylpyrimidine synthase 0.58 PFR28_00429 DNA mismatch repair protein MutS low > 88
Pseudomonas putida KT2440 0.71 PP_4922 Phosphomethylpyrimidine synthase 0.57 PP_1626 DNA mismatch repair protein MutS low > 96
Pseudomonas fluorescens GW456-L13 0.71 PfGW456L13_187 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) 0.57 PfGW456L13_4672 DNA mismatch repair protein MutS low > 87
Pseudomonas sp. S08-1 0.71 OH686_15885 phosphomethylpyrimidine synthase 0.57 OH686_18195 DNA mismatch repair protein MutS low > 80
Pseudomonas fluorescens FW300-N2E2 0.71 Pf6N2E2_3644 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) 0.58 Pf6N2E2_3035 DNA mismatch repair protein MutS low > 103
Pseudomonas syringae pv. syringae B728a ΔmexB 0.71 Psyr_0544 hydroxymethylpyrimidine synthase 0.57 Psyr_1376 DNA mismatch repair protein MutS low > 86
Pseudomonas fluorescens FW300-N2C3 0.71 AO356_08810 thiamine biosynthesis protein ThiC 0.58 AO356_05875 DNA mismatch repair protein MutS low > 104
Pseudomonas syringae pv. syringae B728a 0.71 Psyr_0544 hydroxymethylpyrimidine synthase 0.57 Psyr_1376 DNA mismatch repair protein MutS low > 86
Pseudomonas fluorescens SBW25-INTG 0.71 PFLU_RS02430 phosphomethylpyrimidine synthase ThiC 0.57 PFLU_RS05765 DNA mismatch repair protein MutS low > 109
Pseudomonas fluorescens FW300-N2E3 0.71 AO353_13010 thiamine biosynthesis protein ThiC 0.57 AO353_16625 DNA mismatch repair protein MutS low > 101
Pseudomonas fluorescens SBW25 0.71 PFLU_RS02430 phosphomethylpyrimidine synthase ThiC 0.57 PFLU_RS05765 DNA mismatch repair protein MutS low > 109
Pseudomonas fluorescens FW300-N1B4 0.71 Pf1N1B4_1447 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) 0.57 Pf1N1B4_3117 DNA mismatch repair protein MutS low > 87
Pseudomonas stutzeri RCH2 0.71 Psest_0477 thiamine biosynthesis protein ThiC 0.58 Psest_2875 DNA mismatch repair protein MutS low > 67
Pseudomonas simiae WCS417 0.71 PS417_02355 thiamine biosynthesis protein ThiC 0.58 PS417_05680 DNA mismatch repair protein MutS low > 88
Marinobacter adhaerens HP15 0.70 HP15_453 thiamine biosynthesis protein thiC 0.60 HP15_1047 DNA mismatch repair protein MutS low > 73
Pontibacter actiniarum KMM 6156, DSM 19842 0.70 CA264_20435 phosphomethylpyrimidine synthase ThiC 0.36 CA264_18545 DNA mismatch repair protein MutS low > 74
Mucilaginibacter yixingensis YX-36 DSM 26809 0.70 ABZR88_RS08840 phosphomethylpyrimidine synthase ThiC 0.36 ABZR88_RS10580 DNA mismatch repair protein MutS low > 71
Herbaspirillum seropedicae SmR1 0.69 HSERO_RS02120 phosphomethylpyrimidine synthase ThiC 0.49 HSERO_RS16360 DNA mismatch repair protein MutS low > 78
Echinicola vietnamensis KMM 6221, DSM 17526 0.69 Echvi_3567 thiamine biosynthesis protein ThiC 0.35 Echvi_0960 DNA mismatch repair protein MutS low > 79
Dyella japonica UNC79MFTsu3.2 0.69 ABZR86_RS17230 phosphomethylpyrimidine synthase ThiC 0.55 ABZR86_RS00630 DNA mismatch repair protein MutS low > 74
Castellaniella sp019104865 MT123 0.69 ABCV34_RS10825 phosphomethylpyrimidine synthase ThiC 0.44 ABCV34_RS00270 DNA mismatch repair protein MutS low > 48
Paraburkholderia sabiae LMG 24235 0.69 QEN71_RS05480 phosphomethylpyrimidine synthase ThiC 0.47 QEN71_RS06085 DNA mismatch repair protein MutS low > 153
Dechlorosoma suillum PS 0.69 Dsui_0422 thiamine biosynthesis protein ThiC 0.49 Dsui_2244 DNA mismatch repair protein MutS — —
Paraburkholderia bryophila 376MFSha3.1 0.69 H281DRAFT_00395 hydroxymethylpyrimidine synthase 0.49 H281DRAFT_00537 DNA mismatch repair protein MutS low > 103
Burkholderia phytofirmans PsJN 0.68 BPHYT_RS13220 phosphomethylpyrimidine synthase 0.48 BPHYT_RS12475 DNA mismatch repair protein MutS low > 109
Rhodanobacter sp. FW510-T8 0.68 OKGIIK_16965 thiC phosphomethylpyrimidine synthase ThiC 0.53 OKGIIK_03705 mutS DNA mismatch repair protein MutS low > 52
Acinetobacter radioresistens SK82 0.68 MPMX26_00180 Phosphomethylpyrimidine synthase 0.47 MPMX26_01954 DNA mismatch repair protein MutS low > 36
Paraburkholderia graminis OAS925 0.68 ABIE53_002857 phosphomethylpyrimidine synthase 0.49 ABIE53_002719 DNA mismatch repair protein MutS low > 113
Pedobacter sp. GW460-11-11-14-LB5 0.68 CA265_RS20165 phosphomethylpyrimidine synthase ThiC 0.34 CA265_RS08220 DNA mismatch repair protein MutS low > 88
Ralstonia sp. UNC404CL21Col 0.68 ABZR87_RS04785 phosphomethylpyrimidine synthase ThiC 0.49 ABZR87_RS10580 DNA mismatch repair protein MutS low > 80
Lysobacter sp. OAE881 0.68 ABIE51_RS17515 phosphomethylpyrimidine synthase ThiC 0.54 ABIE51_RS07785 DNA mismatch repair protein MutS low > 62
Ralstonia solanacearum IBSBF1503 0.68 RALBFv3_RS09940 phosphomethylpyrimidine synthase ThiC 0.49 RALBFv3_RS14920 DNA mismatch repair protein MutS low > 76
Ralstonia solanacearum GMI1000 0.68 RS_RS00555 phosphomethylpyrimidine synthase 0.49 RS_RS05735 DNA mismatch repair protein MutS low > 80
Ralstonia solanacearum UW163 0.68 UW163_RS03640 phosphomethylpyrimidine synthase ThiC 0.49 UW163_RS12390 DNA mismatch repair protein MutS — —
Ralstonia solanacearum PSI07 0.68 RPSI07_RS23420 phosphomethylpyrimidine synthase ThiC 0.49 RPSI07_RS18440 DNA mismatch repair protein MutS low > 81
Xanthomonas campestris pv. campestris strain 8004 0.67 Xcc-8004.1066.1 hypothetical protein 0.51 Xcc-8004.3760.1 DNA mismatch repair protein MutS low > 74
Kangiella aquimarina DSM 16071 0.67 B158DRAFT_0295 hydroxymethylpyrimidine synthase 0.52 B158DRAFT_1529 DNA mismatch repair protein MutS low > 40
Cupriavidus basilensis FW507-4G11 0.67 RR42_RS01290 thiamine biosynthesis protein ThiC 0.49 RR42_RS06285 DNA mismatch repair protein MutS low > 128
Magnetospirillum magneticum AMB-1 0.65 AMB_RS01125 phosphomethylpyrimidine synthase 0.32 AMB_RS01455 DNA mismatch repair protein MutS — —
Azospirillum brasilense Sp245 0.65 AZOBR_RS07940 phosphomethylpyrimidine synthase 0.33 AZOBR_RS02125 DNA mismatch repair protein MutS low > 97
Hydrogenophaga sp. GW460-11-11-14-LB1 0.64 GFF166 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) 0.42 GFF3599 DNA mismatch repair protein MutS low > 90
Phaeobacter inhibens DSM 17395 0.64 PGA1_c09110 thiamine biosynthesis protein ThiC 0.33 PGA1_c35000 DNA mismatch repair protein MutS low > 62
Dinoroseobacter shibae DFL-12 0.64 Dshi_4080 thiamine biosynthesis protein ThiC (RefSeq) 0.35 Dshi_3466 DNA mismatch repair protein MutS (RefSeq) — —
Caulobacter crescentus NA1000 0.63 CCNA_02109 thiamine biosynthesis protein thiC 0.28 CCNA_00012 DNA mismatch repair protein MutS low > 66
Caulobacter crescentus NA1000 Δfur 0.63 CCNA_02109 thiamine biosynthesis protein thiC 0.28 CCNA_00012 DNA mismatch repair protein MutS low > 67
Variovorax sp. SCN45 0.63 GFF2000 Phosphomethylpyrimidine synthase ThiC (EC 4.1.99.17) 0.44 GFF6634 DNA mismatch repair protein MutS low > 127
Agrobacterium fabrum C58 0.63 Atu2569 thiamine biosynthesis protein 0.32 Atu0345 DNA mismatch repair protein, MutS family low > 89
Sinorhizobium meliloti 1021 0.63 SM_b20615 thiamine biosynthesis protein ThiC 0.31 SMc01125 DNA mismatch repair protein MutS 0.21 75
Variovorax sp. OAS795 0.63 ABID97_RS25235 phosphomethylpyrimidine synthase ThiC 0.43 ABID97_RS20815 DNA mismatch repair protein MutS low > 91
Azospirillum sp. SherDot2 0.63 MPMX19_00336 Phosphomethylpyrimidine synthase 0.33 MPMX19_00908 DNA mismatch repair protein MutS low > 112
Acidovorax sp. GW101-3H11 0.63 Ac3H11_2027 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) 0.44 Ac3H11_3641 DNA mismatch repair protein MutS low > 79
Brevundimonas sp. GW460-12-10-14-LB2 0.62 A4249_RS15715 phosphomethylpyrimidine synthase ThiC 0.28 A4249_RS12110 DNA mismatch repair protein MutS low > 48
Sphingomonas koreensis DSMZ 15582 0.61 Ga0059261_2424 hydroxymethylpyrimidine synthase 0.32 Ga0059261_3784 DNA mismatch repair protein MutS low > 68
Rhodopseudomonas palustris CGA009 0.60 TX73_018540 phosphomethylpyrimidine synthase ThiC 0.32 TX73_002655 DNA mismatch repair protein MutS low > 86
Bosea sp. OAE506 0.60 ABIE41_RS02770 phosphomethylpyrimidine synthase ThiC 0.30 ABIE41_RS03650 DNA mismatch repair protein MutS low > 77
Rhodospirillum rubrum S1H 0.58 Rru_A2008 Thiamine biosynthesis protein ThiC (NCBI) 0.33 Rru_A3541 MutS 1 protein (NCBI) low > 58
Parabacteroides merdae CL09T00C40 0.57 HMPREF1078_RS03485 phosphomethylpyrimidine synthase ThiC 0.35 HMPREF1078_RS06455 DNA mismatch repair protein MutS low > 61
Bacteroides thetaiotaomicron VPI-5482 0.56 BT0650 thiamine biosynthesis protein ThiC (NCBI ptt file) 0.36 BT3121 DNA mismatch repair protein mutS (NCBI ptt file) low > 81
Phocaeicola vulgatus CL09T03C04 0.56 HMPREF1058_RS03280 phosphomethylpyrimidine synthase ThiC 0.36 HMPREF1058_RS11435 DNA mismatch repair protein MutS low > 67
Phocaeicola dorei CL03T12C01 0.56 ABI39_RS17760 phosphomethylpyrimidine synthase ThiC 0.36 ABI39_RS05500 DNA mismatch repair protein MutS low > 72
Bacteroides ovatus ATCC 8483 0.56 BACOVA_02358 thiamine biosynthesis protein ThiC 0.36 BACOVA_02824 DNA mismatch repair protein MutS low > 94
Bacteroides stercoris CC31F 0.56 HMPREF1181_RS14685 phosphomethylpyrimidine synthase ThiC 0.36 HMPREF1181_RS01980 DNA mismatch repair protein MutS low > 56

Not shown: 1 genomes with orthologs for ECD_03871 only; 7 genomes with orthologs for ECD_02583 only