| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli BL21 | 1.0 | ECD_04103 | | putative antibiotic peptide MccB17 maturation peptidase | 1.0 | ECD_00629 | | tRNA-i(6)A37 methylthiotransferase | 0.71 | 4 |
| Escherichia coli ECOR27 | 1.00 | NOLOHH_04185 | pmbA | metalloprotease PmbA | 1.00 | NOLOHH_23605 | miaB | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 75 |
| Escherichia coli BW25113 | 1.00 | b4235 | pmbA | predicted peptidase required for the maturation and secretion of the antibiotic peptide MccB17 (NCBI) | 1.00 | b0661 | miaB | isopentenyl-adenosine A37 tRNA methylthiolase (NCBI) | 0.25 | 38 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 1.00 | OHPLBJKB_03800 | | Metalloprotease PmbA | 1.00 | OHPLBJKB_03051 | | tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase | low | > 73 |
| Escherichia coli ECOR38 | 1.00 | HEPCGN_10125 | pmbA | metalloprotease PmbA | 1.00 | HEPCGN_01005 | miaB | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 87 |
| Escherichia coli ECRC100 | 1.00 | OKFHMN_11925 | pmbA | metalloprotease PmbA | 1.00 | OKFHMN_07225 | miaB | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.85 | 24 |
| Escherichia coli ECRC101 | 1.00 | MCAODC_02430 | pmbA | metalloprotease PmbA | 1.00 | MCAODC_26440 | miaB | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 87 |
| Escherichia coli ECRC102 | 1.00 | NIAGMN_09775 | pmbA | metalloprotease PmbA | 1.00 | NIAGMN_05280 | miaB | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | — | — |
| Escherichia coli ECRC62 | 1.00 | BNILDI_07325 | pmbA | metalloprotease PmbA | 1.00 | BNILDI_21610 | miaB | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 75 |
| Escherichia coli ECRC99 | 1.00 | KEDOAH_16230 | pmbA | metalloprotease PmbA | 1.00 | KEDOAH_20745 | miaB | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | — | — |
| Escherichia coli ECRC98 | 1.00 | JDDGAC_15565 | pmbA | metalloprotease PmbA | 1.00 | JDDGAC_10870 | miaB | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 86 |
| Escherichia fergusonii Becca | 0.99 | EFB2_04298 | | Metalloprotease PmbA | 1.00 | EFB2_03438 | | tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase | 0.31 | 38 |
| Escherichia coli Nissle 1917 | 0.99 | ECOLIN_RS24570 | | metalloprotease PmbA | 1.00 | ECOLIN_RS03555 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | — | — |
| Enterobacter sp. TBS_079 | 0.96 | MPMX20_00517 | | Metalloprotease PmbA | 0.91 | MPMX20_01311 | | tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase | low | > 85 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.96 | GFF904 | | TldE protein, part of TldE/TldD proteolytic complex | 0.99 | GFF4579 | | tRNA-i(6)A37 methylthiotransferase | low | > 78 |
| Enterobacter asburiae PDN3 | 0.96 | EX28DRAFT_3422 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.91 | EX28DRAFT_2310 | | tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB | low | > 76 |
| Klebsiella michiganensis M5al | 0.94 | BWI76_RS02850 | | metalloprotease PmbA | 0.97 | BWI76_RS08135 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | — | — |
| Serratia liquefaciens MT49 | 0.86 | IAI46_22575 | | metalloprotease PmbA | 0.86 | IAI46_06025 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 86 |
| Rahnella sp. WP5 | 0.85 | EX31_RS12320 | | metalloprotease PmbA | 0.84 | EX31_RS23205 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 89 |
| Pectobacterium carotovorum WPP14 | 0.84 | HER17_RS20090 | | metalloprotease PmbA | 0.89 | HER17_RS15165 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 75 |
| Pantoea sp. MT58 | 0.84 | IAI47_02765 | | metalloprotease PmbA | 0.87 | IAI47_13945 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 76 |
| Dickeya dadantii 3937 | 0.81 | DDA3937_RS01500 | | metalloprotease PmbA | 0.88 | DDA3937_RS06250 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 74 |
| Erwinia tracheiphila SCR3 | 0.81 | LU632_RS02145 | pmbA | metalloprotease PmbA | 0.88 | LU632_RS16305 | miaB | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 74 |
| Dickeya dianthicola ME23 | 0.81 | DZA65_RS01480 | | metalloprotease PmbA | 0.88 | DZA65_RS06640 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 75 |
| Dickeya dianthicola 67-19 | 0.81 | HGI48_RS01415 | | metalloprotease PmbA | 0.88 | HGI48_RS06295 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 71 |
| Vibrio cholerae E7946 ATCC 55056 | 0.64 | CSW01_12845 | | metalloprotease PmbA | 0.77 | CSW01_04915 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 62 |
| Shewanella sp. ANA-3 | 0.59 | Shewana3_3631 | | microcin-processing peptidase 1 (RefSeq) | 0.77 | Shewana3_1008 | | tRNA-i(6)A37 thiotransferase enzyme MiaB (RefSeq) | low | > 73 |
| Shewanella amazonensis SB2B | 0.59 | Sama_0482 | | PmbA protein (RefSeq) | 0.77 | Sama_2575 | | tRNA-i(6)A37 modification enzyme MiaB (RefSeq) | low | > 62 |
| Shewanella oneidensis MR-1 | 0.59 | SO4078 | pmbA | pmba protein (NCBI ptt file) | 0.77 | SO1181 | miaB | tRNA-i(6)A37 modification enzyme MiaB (NCBI ptt file) | low | > 76 |
| Shewanella loihica PV-4 | 0.57 | Shew_0416 | | peptidase U62, modulator of DNA gyrase (RefSeq) | 0.75 | Shew_2923 | | tRNA-i(6)A37 thiotransferase enzyme MiaB (RefSeq) | low | > 60 |
| Alteromonas macleodii MIT1002 | 0.54 | MIT1002_00230 | | peptidase PmbA | 0.78 | MIT1002_01480 | | (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB | low | > 70 |
| Pseudomonas sp. RS175 | 0.48 | PFR28_00163 | | Metalloprotease PmbA | 0.62 | PFR28_03848 | | tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase | low | > 88 |
| Pseudomonas fluorescens SBW25 | 0.48 | PFLU_RS04350 | | metalloprotease PmbA | 0.62 | PFLU_RS26555 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.48 | PFLU_RS04350 | | metalloprotease PmbA | 0.62 | PFLU_RS26555 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 109 |
| Pseudomonas fluorescens FW300-N2E2 | 0.48 | Pf6N2E2_3278 | | TldE protein, part of TldE/TldD proteolytic complex | 0.63 | Pf6N2E2_5018 | | tRNA-i(6)A37 methylthiotransferase | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.48 | AO356_07085 | | peptidase PmbA | 0.63 | AO356_15410 | | (dimethylallyl)adenosine tRNA methylthiotransferase | low | > 104 |
| Pseudomonas simiae WCS417 | 0.47 | PS417_04295 | | peptidase PmbA | 0.62 | PS417_24625 | | (dimethylallyl)adenosine tRNA methylthiotransferase | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.47 | Pf1N1B4_1090 | | TldE protein, part of TldE/TldD proteolytic complex | 0.63 | Pf1N1B4_2712 | | tRNA-i(6)A37 methylthiotransferase | low | > 87 |
| Pseudomonas fluorescens GW456-L13 | 0.47 | PfGW456L13_5024 | | TldE protein, part of TldE/TldD proteolytic complex | 0.63 | PfGW456L13_1380 | | tRNA-i(6)A37 methylthiotransferase | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.47 | AO353_05205 | | peptidase PmbA | 0.63 | AO353_06375 | | (dimethylallyl)adenosine tRNA methylthiotransferase | 0.33 | 40 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.46 | Psyr_4154 | | microcin-processing peptidase 1, Unknown type peptidase, MEROPS family U62 | 0.62 | Psyr_4345 | | tRNA-i(6)A37 thiotransferase enzyme MiaB | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.46 | Psyr_4154 | | microcin-processing peptidase 1, Unknown type peptidase, MEROPS family U62 | 0.62 | Psyr_4345 | | tRNA-i(6)A37 thiotransferase enzyme MiaB | low | > 86 |
| Pseudomonas stutzeri RCH2 | 0.45 | Psest_3318 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.64 | Psest_0532 | | tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB | low | > 67 |
| Herbaspirillum seropedicae SmR1 | 0.45 | HSERO_RS09265 | | peptidase C69 | 0.58 | HSERO_RS03615 | | (dimethylallyl)adenosine tRNA methylthiotransferase | low | > 78 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.45 | Xcc-8004.1885.1 | | TldE protein, part of TldE/TldD proteolytic complex | 0.63 | Xcc-8004.2224.1 | | tRNA-i(6)A37 methylthiotransferase | low | > 74 |
| Variovorax sp. OAS795 | 0.45 | ABID97_RS20695 | | metalloprotease PmbA | 0.57 | ABID97_RS06475 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 91 |
| Dyella japonica UNC79MFTsu3.2 | 0.45 | ABZR86_RS21700 | | metalloprotease PmbA | 0.64 | ABZR86_RS09895 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 74 |
| Rhodanobacter sp. FW510-T8 | 0.45 | OKGIIK_10260 | pmbA | metalloprotease PmbA | 0.63 | OKGIIK_02990 | miaB | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 52 |
| Pseudomonas sp. S08-1 | 0.45 | OH686_08570 | | TldE protein, part of TldE/TldD proteolytic complex | 0.64 | OH686_09215 | | tRNA-i(6)A37 thiotransferase enzyme MiaB | low | > 80 |
| Variovorax sp. SCN45 | 0.45 | GFF4697 | | TldE protein, part of TldE/TldD proteolytic complex | 0.57 | GFF7320 | | tRNA-i(6)A37 methylthiotransferase (EC 2.8.4.3) | low | > 127 |
| Rhodanobacter denitrificans FW104-10B01 | 0.44 | LRK54_RS03375 | | metalloprotease PmbA | 0.62 | LRK54_RS13750 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.44 | LRK55_RS03125 | | metalloprotease PmbA | 0.63 | LRK55_RS13465 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 63 |
| Dechlorosoma suillum PS | 0.44 | Dsui_1234 | | putative Zn-dependent protease-like protein | 0.61 | Dsui_1194 | | tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB | low | > 51 |
| Acidovorax sp. GW101-3H11 | 0.44 | Ac3H11_3262 | | TldE protein, part of TldE/TldD proteolytic complex | 0.56 | Ac3H11_4008 | | tRNA-i(6)A37 methylthiotransferase | low | > 79 |
| Ralstonia solanacearum UW163 | 0.43 | UW163_RS15845 | | metalloprotease PmbA | 0.57 | UW163_RS01760 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.43 | RALBFv3_RS13965 | | metalloprotease PmbA | 0.57 | RALBFv3_RS11825 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 76 |
| Ralstonia sp. UNC404CL21Col | 0.43 | ABZR87_RS09660 | | metalloprotease PmbA | 0.56 | ABZR87_RS07780 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.43 | RPSI07_RS19505 | | metalloprotease PmbA | 0.57 | RPSI07_RS21380 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 81 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.43 | H281DRAFT_04304 | | microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62 | 0.57 | H281DRAFT_04239 | | tRNA-i(6)A37 thiotransferase enzyme MiaB | low | > 103 |
| Kangiella aquimarina DSM 16071 | 0.43 | B158DRAFT_2075 | | microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62 | 0.69 | B158DRAFT_0099 | | tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB | low | > 40 |
| Paraburkholderia sabiae LMG 24235 | 0.43 | QEN71_RS04270 | | metalloprotease PmbA | 0.58 | QEN71_RS02195 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 153 |
| Burkholderia phytofirmans PsJN | 0.43 | BPHYT_RS14705 | | peptidase C69 | 0.57 | BPHYT_RS16535 | | tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase | low | > 109 |
| Castellaniella sp019104865 MT123 | 0.42 | ABCV34_RS10610 | | metalloprotease PmbA | 0.58 | ABCV34_RS15345 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 48 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.41 | GFF3655 | | TldE protein, part of TldE/TldD proteolytic complex | 0.57 | GFF613 | | tRNA-i(6)A37 methylthiotransferase | low | > 90 |
| Lysobacter sp. OAE881 | 0.41 | ABIE51_RS06805 | | metalloprotease PmbA | 0.63 | ABIE51_RS15455 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 62 |
| Ralstonia solanacearum GMI1000 | 0.41 | RS_RS04700 | | metalloprotease PmbA | 0.57 | RS_RS02645 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 80 |
| Cupriavidus basilensis FW507-4G11 | 0.41 | RR42_RS14750 | | peptidase PMbA | 0.58 | RR42_RS02855 | | dimethylallyladenosine tRNA methylthiotransferase | low | > 128 |
| Azospirillum brasilense Sp245 | 0.34 | AZOBR_RS11930 | | modulator protein | 0.43 | AZOBR_RS01475 | | (dimethylallyl)adenosine tRNA methylthiotransferase | low | > 97 |
| Azospirillum sp. SherDot2 | 0.34 | MPMX19_01886 | | Metalloprotease PmbA | 0.44 | MPMX19_02511 | | tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase | low | > 112 |
| Sphingomonas koreensis DSMZ 15582 | 0.30 | Ga0059261_0810 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.37 | Ga0059261_1604 | | tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB | low | > 68 |
| Magnetospirillum magneticum AMB-1 | 0.29 | AMB_RS22120 | | TldD/PmbA family protein | 0.43 | AMB_RS22585 | | tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase | low | > 64 |
| Rhodopseudomonas palustris CGA009 | 0.29 | TX73_005930 | | TldD/PmbA family protein | 0.38 | TX73_002325 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 86 |
| Rhodospirillum rubrum S1H | 0.29 | Rru_A0575 | | Peptidase U62, modulator of DNA gyrase (NCBI) | 0.42 | Rru_A3770 | | tRNA-i(6)A37 modification enzyme MiaB (NCBI) | low | > 58 |
| Caulobacter crescentus NA1000 Δfur | 0.28 | CCNA_00311 | | Zn-dependent protease family protein | 0.41 | CCNA_00054 | | tRNA 2-methylthioadenosine synthase | low | > 67 |
| Caulobacter crescentus NA1000 | 0.28 | CCNA_00311 | | Zn-dependent protease family protein | 0.41 | CCNA_00054 | | tRNA 2-methylthioadenosine synthase | low | > 66 |
| Sinorhizobium meliloti 1021 | 0.28 | SMc00897 | | PMBA protein | 0.43 | SMc01115 | | (dimethylallyl)adenosine tRNA methylthiotransferase | low | > 103 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.28 | A4249_RS09195 | | TldD/PmbA family protein | 0.40 | A4249_RS14720 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 48 |
| Agrobacterium fabrum C58 | 0.27 | Atu0693 | | PmbA/TldD related protein | 0.42 | Atu0356 | | miaB protein | low | > 89 |
| Phaeobacter inhibens DSM 17395 | 0.27 | PGA1_c33480 | | protein PmbA | 0.40 | PGA1_c04710 | | (dimethylallyl)adenosine tRNA methylthiotransferase MiaB | — | — |
| Rhizobium sp. OAE497 | 0.27 | ABIE40_RS03780 | | TldD/PmbA family protein | 0.41 | ABIE40_RS01705 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 107 |
| Dinoroseobacter shibae DFL-12 | 0.26 | Dshi_0064 | | peptidase U62 modulator of DNA gyrase (RefSeq) | 0.42 | Dshi_1019 | | RNA modification enzyme, MiaB family (RefSeq) | low | > 64 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.20 | BT3649 | | putative modulator of DNA gyrase (NCBI ptt file) | 0.34 | BT3195 | | conserved hypothetical protein (NCBI ptt file) | low | > 81 |
| Bacteroides stercoris CC31F | 0.17 | HMPREF1181_RS03170 | | TldD/PmbA family protein | 0.34 | HMPREF1181_RS01770 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 56 |
| Parabacteroides merdae CL09T00C40 | 0.16 | HMPREF1078_RS03625 | | TldD/PmbA family protein | 0.32 | HMPREF1078_RS17135 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 61 |
| Synechococcus elongatus PCC 7942 | 0.09 | Synpcc7942_1289 | pmbA | putative modulator of DNA gyrase | 0.35 | Synpcc7942_2374 | | tRNA-i(6)A37 thiotransferase enzyme MiaB | low | > 38 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.06 | CA265_RS02445 | | peptidase C69 | 0.29 | CA265_RS21675 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 88 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.06 | CA264_16645 | | peptidase C69 | 0.32 | CA264_05315 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 74 |
Not shown: 2 genomes with orthologs for ECD_04103 only; 15 genomes with orthologs for ECD_00629 only