Conservation of cofitness between Dsui_2385 and Dsui_0311 in Dechlorosoma suillum PS

90 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Dechlorosoma suillum PS 1.0 Dsui_2385 transcription-repair coupling factor Mfd 1.0 Dsui_0311 ATP-dependent DNA helicase RecG 0.92 4
Cupriavidus basilensis FW507-4G11 0.64 RR42_RS07845 transcription-repair coupling factor 0.59 RR42_RS17390 ATP-dependent DNA helicase RecG low > 128
Ralstonia sp. UNC404CL21Col 0.64 ABZR87_RS13240 transcription-repair coupling factor 0.59 ABZR87_RS01270 ATP-dependent DNA helicase RecG low > 80
Herbaspirillum seropedicae SmR1 0.64 HSERO_RS15180 transcription-repair coupling factor 0.56 HSERO_RS06165 ATP-dependent DNA helicase RecG 0.47 5
Paraburkholderia graminis OAS925 0.64 ABIE53_002095 transcription-repair coupling factor (superfamily II helicase) 0.56 ABIE53_000833 ATP-dependent DNA helicase RecG low > 113
Paraburkholderia bryophila 376MFSha3.1 0.64 H281DRAFT_00880 transcription-repair coupling factor 0.56 H281DRAFT_04672 ATP-dependent DNA helicase RecG low > 103
Ralstonia solanacearum IBSBF1503 0.63 RALBFv3_RS01445 transcription-repair coupling factor 0.59 RALBFv3_RS05675 DNA helicase RecG low > 76
Ralstonia solanacearum UW163 0.63 UW163_RS14755 transcription-repair coupling factor 0.59 UW163_RS07950 DNA helicase RecG — —
Ralstonia solanacearum GMI1000 0.63 RS_RS08275 transcription-repair coupling factor 0.58 RS_RS13565 DNA helicase RecG — —
Burkholderia phytofirmans PsJN 0.63 BPHYT_RS09290 helicase 0.56 BPHYT_RS03400 ATP-dependent DNA helicase RecG low > 109
Paraburkholderia sabiae LMG 24235 0.63 QEN71_RS22060 transcription-repair coupling factor 0.56 QEN71_RS26630 ATP-dependent DNA helicase RecG — —
Ralstonia solanacearum PSI07 0.63 RPSI07_RS16040 transcription-repair coupling factor 0.58 RPSI07_RS11625 DNA helicase RecG low > 81
Variovorax sp. OAS795 0.60 ABID97_RS17285 transcription-repair coupling factor 0.50 ABID97_RS01575 ATP-dependent DNA helicase RecG low > 91
Hydrogenophaga sp. GW460-11-11-14-LB1 0.59 GFF4934 Transcription-repair coupling factor 0.49 GFF2802 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 90
Acidovorax sp. GW101-3H11 0.59 Ac3H11_328 Transcription-repair coupling factor 0.51 Ac3H11_781 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 79
Variovorax sp. SCN45 0.59 GFF412 Transcription-repair coupling factor 0.48 GFF5538 ATP-dependent DNA helicase RecG (EC 3.6.4.12) low > 127
Castellaniella sp019104865 MT123 0.55 ABCV34_RS08660 transcription-repair coupling factor 0.49 ABCV34_RS03570 ATP-dependent DNA helicase RecG low > 48
Pseudomonas stutzeri RCH2 0.48 Psest_1653 transcription-repair coupling factor (mfd) 0.46 Psest_4192 ATP-dependent DNA helicase RecG — —
Pseudomonas fluorescens FW300-N2E2 0.48 Pf6N2E2_2278 Transcription-repair coupling factor 0.45 Pf6N2E2_4352 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 103
Pseudomonas sp. S08-1 0.48 OH686_21990 transcription-repair coupling factor 0.45 OH686_13505 ATP-dependent DNA helicase RecG low > 80
Pseudomonas fluorescens FW300-N2C3 0.48 AO356_02270 transcription-repair coupling factor 0.45 AO356_12380 ATP-dependent DNA helicase RecG low > 104
Pseudomonas sp. RS175 0.47 PFR28_01123 Transcription-repair-coupling factor 0.45 PFR28_04435 ATP-dependent DNA helicase RecG low > 88
Pseudomonas fluorescens FW300-N2E3 0.47 AO353_00435 transcription-repair coupling factor 0.45 AO353_09320 ATP-dependent DNA helicase RecG low > 101
Pseudomonas syringae pv. syringae B728a 0.47 Psyr_1896 transcription-repair coupling factor 0.45 Psyr_0201 ATP-dependent DNA helicase RecG low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.47 Psyr_1896 transcription-repair coupling factor 0.45 Psyr_0201 ATP-dependent DNA helicase RecG low > 86
Pseudomonas simiae WCS417 0.47 PS417_07635 transcription-repair coupling factor 0.45 PS417_27870 ATP-dependent DNA helicase RecG 0.22 61
Pseudomonas fluorescens GW456-L13 0.47 PfGW456L13_4027 Transcription-repair coupling factor 0.45 PfGW456L13_772 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 87
Pseudomonas fluorescens SBW25 0.47 PFLU_RS07710 transcription-repair coupling factor 0.45 PFLU_RS29550 ATP-dependent DNA helicase RecG low > 109
Pseudomonas fluorescens SBW25-INTG 0.47 PFLU_RS07710 transcription-repair coupling factor 0.45 PFLU_RS29550 ATP-dependent DNA helicase RecG low > 109
Pseudomonas fluorescens FW300-N1B4 0.47 Pf1N1B4_3916 Transcription-repair coupling factor 0.46 Pf1N1B4_2105 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 87
Alteromonas macleodii MIT1002 0.46 MIT1002_01646 Transcription-repair-coupling factor 0.43 MIT1002_00111 ATP-dependent DNA helicase RecG low > 70
Pseudomonas putida KT2440 0.46 PP_2148 transcription-repair coupling factor 0.46 PP_5310 junction-specific ATP-dependent DNA helicase low > 96
Rhodanobacter denitrificans FW104-10B01 0.46 LRK54_RS02040 transcription-repair coupling factor 0.44 LRK54_RS11805 ATP-dependent DNA helicase RecG low > 59
Kangiella aquimarina DSM 16071 0.46 B158DRAFT_1800 transcription-repair coupling factor 0.43 B158DRAFT_0566 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.67 34
Rhodanobacter denitrificans MT42 0.46 LRK55_RS01815 transcription-repair coupling factor 0.44 LRK55_RS11530 ATP-dependent DNA helicase RecG low > 63
Dyella japonica UNC79MFTsu3.2 0.45 ABZR86_RS21210 transcription-repair coupling factor 0.44 ABZR86_RS11840 ATP-dependent DNA helicase RecG 0.55 13
Marinobacter adhaerens HP15 0.45 HP15_2257 transcription-repair-coupling factor 0.43 HP15_309 DNA helicase, ATP-dependent, RecG 0.83 3
Shewanella sp. ANA-3 0.44 Shewana3_2289 transcription-repair coupling factor (RefSeq) 0.44 Shewana3_0348 ATP-dependent DNA helicase RecG (RefSeq) low > 73
Vibrio cholerae E7946 ATCC 55056 0.44 CSW01_09445 transcription-repair coupling factor 0.41 CSW01_13680 DNA helicase RecG 0.47 16
Rhodanobacter sp. FW510-T8 0.44 OKGIIK_09105 mfd transcription-repair coupling factor 0.43 OKGIIK_12090 recG ATP-dependent DNA helicase RecG low > 52
Shewanella oneidensis MR-1 0.44 SO2255 mfd transcription-repair coupling factor (NCBI ptt file) 0.43 SO4364 recG ATP-dependent DNA helicase RecG (NCBI ptt file) low > 76
Pantoea sp. MT58 0.44 IAI47_11975 transcription-repair coupling factor 0.43 IAI47_00500 ATP-dependent DNA helicase RecG low > 76
Escherichia coli ECOR38 0.44 HEPCGN_24015 mfd transcription-repair coupling factor 0.43 HEPCGN_14365 recG ATP-dependent DNA helicase RecG low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.44 OHPLBJKB_02552 Transcription-repair-coupling factor 0.43 OHPLBJKB_00049 ATP-dependent DNA helicase RecG 0.60 72
Escherichia coli ECRC101 0.44 MCAODC_22830 mfd transcription-repair coupling factor 0.43 MCAODC_06055 recG ATP-dependent DNA helicase RecG — —
Escherichia coli ECRC98 0.44 JDDGAC_07130 mfd transcription-repair coupling factor 0.43 JDDGAC_19170 recG ATP-dependent DNA helicase RecG — —
Escherichia coli ECRC99 0.44 KEDOAH_24285 mfd transcription-repair coupling factor 0.43 KEDOAH_12600 recG ATP-dependent DNA helicase RecG — —
Escherichia coli BW25113 0.44 b1114 mfd transcription-repair coupling factor (NCBI) 0.42 b3652 recG ATP-dependent DNA helicase (NCBI) 0.26 40
Escherichia fergusonii Becca 0.44 EFB2_02861 Transcription-repair-coupling factor 0.43 EFB2_00136 ATP-dependent DNA helicase RecG low > 86
Escherichia coli ECRC101 0.44 OKFHMN_03470 mfd transcription-repair coupling factor 0.43 OKFHMN_15545 recG ATP-dependent DNA helicase RecG — —
Escherichia coli ECOR27 0.44 NOLOHH_20995 mfd transcription-repair coupling factor 0.42 NOLOHH_07425 recG ATP-dependent DNA helicase RecG low > 57
Escherichia coli ECRC62 0.44 BNILDI_19160 mfd transcription-repair coupling factor 0.43 BNILDI_04090 recG ATP-dependent DNA helicase RecG — —
Escherichia coli ECRC102 0.44 NIAGMN_24360 mfd transcription-repair coupling factor 0.43 NIAGMN_13305 recG ATP-dependent DNA helicase RecG — —
Escherichia coli BL21 0.44 ECD_01110 transcription-repair coupling factor 0.42 ECD_03509 ATP-dependent DNA helicase low > 60
Enterobacter asburiae PDN3 0.43 EX28DRAFT_1816 transcription-repair coupling factor (mfd) 0.41 EX28DRAFT_3901 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 76
Shewanella amazonensis SB2B 0.43 Sama_1330 transcription-repair coupling factor (RefSeq) 0.43 Sama_3375 ATP-dependent DNA helicase RecG (RefSeq) low > 62
Pectobacterium carotovorum WPP14 0.43 HER17_RS08775 transcription-repair coupling factor 0.41 HER17_RS21395 ATP-dependent DNA helicase RecG low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.43 GFF3397 Transcription-repair coupling factor 0.42 GFF355 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 78
Shewanella loihica PV-4 0.43 Shew_1630 transcription-repair coupling factor (RefSeq) 0.44 Shew_3507 ATP-dependent DNA helicase RecG (RefSeq) low > 60
Enterobacter sp. TBS_079 0.43 MPMX20_01795 Transcription-repair-coupling factor 0.42 MPMX20_00084 ATP-dependent DNA helicase RecG low > 85
Erwinia tracheiphila SCR3 0.43 LU632_RS14730 mfd transcription-repair coupling factor 0.42 LU632_RS22190 recG ATP-dependent DNA helicase RecG low > 74
Klebsiella michiganensis M5al 0.43 BWI76_RS11205 transcription-repair coupling factor 0.41 BWI76_RS27440 DNA helicase RecG 0.33 85
Lysobacter sp. OAE881 0.43 ABIE51_RS14320 transcription-repair coupling factor 0.45 ABIE51_RS17230 ATP-dependent DNA helicase RecG 0.60 15
Dickeya dadantii 3937 0.43 DDA3937_RS13000 transcription-repair coupling factor 0.42 DDA3937_RS00170 ATP-dependent DNA helicase RecG low > 74
Acinetobacter radioresistens SK82 0.43 MPMX26_01319 Transcription-repair-coupling factor 0.46 MPMX26_02732 ATP-dependent DNA helicase RecG low > 36
Dickeya dianthicola 67-19 0.43 HGI48_RS13065 transcription-repair coupling factor 0.42 HGI48_RS21190 ATP-dependent DNA helicase RecG low > 71
Dickeya dianthicola ME23 0.43 DZA65_RS13530 transcription-repair coupling factor 0.42 DZA65_RS22160 ATP-dependent DNA helicase RecG low > 75
Rahnella sp. WP5 0.42 EX31_RS24520 transcription-repair coupling factor 0.43 EX31_RS15820 ATP-dependent DNA helicase RecG low > 89
Serratia liquefaciens MT49 0.42 IAI46_10320 transcription-repair coupling factor 0.41 IAI46_24905 ATP-dependent DNA helicase RecG low > 86
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.1775.1 Transcription-repair coupling factor 0.42 Xcc-8004.1204.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 74
Caulobacter crescentus NA1000 0.33 CCNA_01920 transcription-repair coupling factor Mfd 0.34 CCNA_01504 ATP-dependent DNA helicase recG 0.51 20
Caulobacter crescentus NA1000 Δfur 0.33 CCNA_01920 transcription-repair coupling factor Mfd 0.34 CCNA_01504 ATP-dependent DNA helicase recG low > 67
Brevundimonas sp. GW460-12-10-14-LB2 0.32 A4249_RS04775 transcription-repair coupling factor 0.31 A4249_RS04765 ATP-dependent DNA helicase RecG low > 48
Magnetospirillum magneticum AMB-1 0.31 AMB_RS12390 transcription-repair coupling factor 0.33 AMB_RS12400 ATP-dependent DNA helicase RecG — —
Azospirillum sp. SherDot2 0.31 MPMX19_00876 Transcription-repair-coupling factor 0.33 MPMX19_00951 ATP-dependent DNA helicase RecG — —
Rhodospirillum rubrum S1H 0.30 Rru_A1726 Transcription-repair coupling factor (NCBI) 0.30 Rru_A1728 ATP-dependent DNA helicase RecG (NCBI) — —
Rhodopseudomonas palustris CGA009 0.30 TX73_013805 transcription-repair coupling factor 0.30 TX73_013795 ATP-dependent DNA helicase RecG low > 86
Bosea sp. OAE506 0.29 ABIE41_RS15825 transcription-repair coupling factor 0.31 ABIE41_RS15815 ATP-dependent DNA helicase RecG low > 77
Dinoroseobacter shibae DFL-12 0.29 Dshi_1561 transcription-repair coupling factor (RefSeq) 0.32 Dshi_1510 DEAD/DEAH box helicase domain protein (RefSeq) 0.42 9
Phaeobacter inhibens DSM 17395 0.29 PGA1_c14920 transcription-repair-coupling factor Mfd 0.32 PGA1_c14380 ATP-dependent DNA helicase RecG low > 62
Agrobacterium fabrum C58 0.29 Atu1778 transcription-repair coupling factor 0.34 Atu1780 ATP-dependent DNA helicase 0.55 4
Sinorhizobium meliloti 1021 0.29 SMc04450 transcription-repair coupling factor 0.33 SMc00228 ATP-dependent DNA helicase RecG low > 103
Rhizobium sp. OAE497 0.29 ABIE40_RS09310 transcription-repair coupling factor 0.34 ABIE40_RS09300 ATP-dependent DNA helicase RecG low > 107
Synechococcus elongatus PCC 7942 0.26 Synpcc7942_1326 mfd transcription-repair coupling factor 0.33 Synpcc7942_1079 recG ATP-dependent DNA helicase RecG — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.25 Echvi_1312 transcription-repair coupling factor (mfd) 0.32 Echvi_1162 ATP-dependent DNA helicase RecG 0.41 14
Parabacteroides merdae CL09T00C40 0.25 HMPREF1078_RS02110 transcription-repair coupling factor 0.33 HMPREF1078_RS12765 ATP-dependent DNA helicase RecG — —
Phocaeicola vulgatus CL09T03C04 0.25 HMPREF1058_RS15450 transcription-repair coupling factor 0.33 HMPREF1058_RS08295 ATP-dependent DNA helicase RecG low > 67
Phocaeicola dorei CL03T12C01 0.25 ABI39_RS11420 transcription-repair coupling factor 0.33 ABI39_RS02470 ATP-dependent DNA helicase RecG low > 72
Mycobacterium tuberculosis H37Rv 0.24 Rv1020 Probable transcription-repair coupling factor Mfd (TRCF) 0.25 Rv2973c Probable ATP-dependent DNA helicase RecG low > 58
Pontibacter actiniarum KMM 6156, DSM 19842 0.24 CA264_15820 transcription-repair coupling factor 0.32 CA264_15020 DNA helicase RecG 0.37 72
Bacteroides thetaiotaomicron VPI-5482 0.24 BT0252 transcription-repair coupling factor (NCBI ptt file) 0.32 BT3924 ATP-dependent DNA helicase recG (NCBI ptt file) — —

Not shown: 5 genomes with orthologs for Dsui_2385 only; 6 genomes with orthologs for Dsui_0311 only