Conservation of cofitness between CSW01_04820 and CSW01_13285 in Vibrio cholerae E7946 ATCC 55056

99 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_04820 serine hydroxymethyltransferase 1.0 CSW01_13285 ribulose-phosphate 3-epimerase 0.89 10
Shewanella sp. ANA-3 0.83 Shewana3_1094 glyA serine hydroxymethyltransferase (RefSeq) 0.78 Shewana3_3888 ribulose-5-phosphate 3-epimerase (RefSeq) — —
Shewanella oneidensis MR-1 0.83 SO3471 glyA serine hydroxymethyltransferase (NCBI ptt file) 0.78 SO0292 rpe ribulose-phosphate 3-epimerase (NCBI ptt file) — —
Shewanella amazonensis SB2B 0.82 Sama_1014 glyA serine hydroxymethyltransferase (RefSeq) 0.77 Sama_3362 ribulose-phosphate 3-epimerase (RefSeq) — —
Dickeya dadantii 3937 0.81 DDA3937_RS15600 serine hydroxymethyltransferase 0.75 DDA3937_RS19530 ribulose-phosphate 3-epimerase — —
Shewanella loihica PV-4 0.81 Shew_1185 glyA serine hydroxymethyltransferase (RefSeq) 0.77 Shew_0219 ribulose-phosphate 3-epimerase (RefSeq) — —
Dickeya dianthicola ME23 0.81 DZA65_RS16775 serine hydroxymethyltransferase 0.76 DZA65_RS20745 ribulose-phosphate 3-epimerase — —
Dickeya dianthicola 67-19 0.81 HGI48_RS15700 serine hydroxymethyltransferase 0.76 HGI48_RS19660 ribulose-phosphate 3-epimerase — —
Serratia liquefaciens MT49 0.81 IAI46_19395 serine hydroxymethyltransferase 0.76 IAI46_23685 ribulose-phosphate 3-epimerase — —
Pectobacterium carotovorum WPP14 0.81 HER17_RS05950 serine hydroxymethyltransferase 0.76 HER17_RS01795 ribulose-phosphate 3-epimerase — —
Pantoea sp. MT58 0.81 IAI47_04960 serine hydroxymethyltransferase 0.76 IAI47_01910 ribulose-phosphate 3-epimerase — —
Pantoea agglomerans CFBP13505 P0401 0.81 PagCFBP13505_RS14850 serine hydroxymethyltransferase 0.76 PagCFBP13505_RS21685 ribulose-phosphate 3-epimerase — —
Rahnella sp. WP5 0.80 EX31_RS20585 serine hydroxymethyltransferase 0.74 EX31_RS04705 ribulose-phosphate 3-epimerase — —
Erwinia tracheiphila SCR3 0.80 LU632_RS17915 serine hydroxymethyltransferase 0.76 LU632_RS22850 rpe ribulose-phosphate 3-epimerase — —
Erwinia tracheiphila HP pepo 2.2 0.80 IJEDHG_02915 Serine hydroxymethyltransferase 1 0.76 IJEDHG_12050 rpe ribulose-phosphate 3-epimerase — —
Erwinia amylovora T8 0.79 OLJFJH_10340 Serine hydroxymethyltransferase 0.76 OLJFJH_04075 ribulose-phosphate 3-epimerase — —
Escherichia coli ECOR38 0.79 HEPCGN_20655 glyA serine hydroxymethyltransferase 0.77 HEPCGN_15950 rpe ribulose-phosphate 3-epimerase low > 88
Escherichia coli ECRC102 0.79 NIAGMN_19280 glyA serine hydroxymethyltransferase 0.77 NIAGMN_14900 dam adenine-specific DNA-methyltransferase — —
Escherichia coli BL21 0.79 ECD_02443 serine hydroxymethyltransferase 0.77 ECD_03238 D-ribulose-5-phosphate 3-epimerase low > 61
Escherichia coli ECRC62 0.79 BNILDI_11985 glyA serine hydroxymethyltransferase 0.77 BNILDI_02600 dam adenine-specific DNA-methyltransferase — —
Escherichia fergusonii Becca 0.79 EFB2_01345 Serine hydroxymethyltransferase 0.77 EFB2_00442 Ribulose-phosphate 3-epimerase — —
Escherichia coli ECRC98 0.79 JDDGAC_25175 glyA serine hydroxymethyltransferase 0.77 JDDGAC_20760 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECRC101 0.79 MCAODC_12040 glyA serine hydroxymethyltransferase 0.77 MCAODC_07660 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECRC99 0.79 KEDOAH_06710 glyA serine hydroxymethyltransferase 0.77 KEDOAH_11010 dam adenine-specific DNA-methyltransferase — —
Escherichia coli Nissle 1917 0.79 ECOLIN_RS14440 serine hydroxymethyltransferase 0.77 ECOLIN_RS19345 ribulose-phosphate 3-epimerase — —
Escherichia coli BW25113 0.79 b2551 glyA serine hydroxymethyltransferase (NCBI) 0.77 b3386 rpe ribulose-phosphate 3-epimerase (NCBI) — —
Escherichia coli ECOR27 0.79 NOLOHH_13185 glyA serine hydroxymethyltransferase 0.77 NOLOHH_08920 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECRC100 0.79 OKFHMN_21510 glyA serine hydroxymethyltransferase 0.77 OKFHMN_17130 dam adenine-specific DNA-methyltransferase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.79 OHPLBJKB_01156 Serine hydroxymethyltransferase 0.77 OHPLBJKB_00317 Ribulose-phosphate 3-epimerase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.79 GFF2447 Serine hydroxymethyltransferase (EC 2.1.2.1) 0.76 GFF633 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) — —
Klebsiella pneumoniae MKP103 0.79 KDGMDA_28355 Serine hydroxymethyltransferase 0.78 KDGMDA_06895 ribulose-phosphate 3-epimerase — —
Klebsiella michiganensis M5al 0.79 BWI76_RS21225 serine hydroxymethyltransferase 0.77 BWI76_RS26070 ribulose-phosphate 3-epimerase — —
Enterobacter asburiae PDN3 0.79 EX28DRAFT_0099 Glycine/serine hydroxymethyltransferase 0.78 EX28DRAFT_4156 ribulose-phosphate 3-epimerase — —
Enterobacter sp. TBS_079 0.79 MPMX20_03420 Serine hydroxymethyltransferase 0.77 MPMX20_04275 Ribulose-phosphate 3-epimerase — —
Pseudomonas sp. RS175 0.75 PFR28_03786 Serine hydroxymethyltransferase 0.70 PFR28_04049 Ribulose-phosphate 3-epimerase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.75 Psyr_4270 serine hydroxymethyltransferase 0.71 Psyr_4611 ribulose-5-phosphate 3-epimerase — —
Pseudomonas orientalis W4I3 0.75 QF045_RS26575 serine hydroxymethyltransferase 0.70 QF045_RS00135 ribulose-phosphate 3-epimerase — —
Pseudomonas syringae pv. syringae B728a 0.75 Psyr_4270 serine hydroxymethyltransferase 0.71 Psyr_4611 ribulose-5-phosphate 3-epimerase — —
Pseudomonas fluorescens FW300-N2E2 0.75 Pf6N2E2_5082 Serine hydroxymethyltransferase (EC 2.1.2.1) 0.71 Pf6N2E2_4820 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) — —
Pseudomonas sp. SVBP6 0.74 COO64_RS02995 glyA serine hydroxymethyltransferase 0.71 COO64_RS22440 rpe ribulose-phosphate 3-epimerase — —
Pseudomonas fluorescens FW300-N2E3 0.74 AO353_14020 serine hydroxymethyltransferase 0.70 AO353_07240 ribulose phosphate epimerase — —
Pseudomonas fluorescens FW300-N2C3 0.74 AO356_15725 serine hydroxymethyltransferase 0.70 AO356_14410 ribulose phosphate epimerase — —
Pseudomonas putida KT2440 0.74 PP_0671 serine hydroxymethyltransferase 0.71 PP_0415 ribulose-5-phosphate 3-epimerase — —
Pseudomonas sp. DMC3 0.74 GFF3963 Serine hydroxymethyltransferase 0.69 GFF22 Ribulose-phosphate 3-epimerase — —
Pseudomonas lactucae CFBP13502 0.74 GEMAOFIL_05008 Serine hydroxymethyltransferase 0.71 GEMAOFIL_05267 Ribulose-phosphate 3-epimerase — —
Pseudomonas sp. BP01 0.74 JOY50_RS24625 glyA serine hydroxymethyltransferase 0.71 JOY50_RS18210 rpe ribulose-phosphate 3-epimerase — —
Pseudomonas sp. S08-1 0.74 OH686_16230 Serine hydroxymethyltransferase 0.70 OH686_15115 ribulose-phosphate 3-epimerase — —
Pseudomonas simiae WCS417 0.74 PS417_24280 serine hydroxymethyltransferase 0.71 PS417_25735 ribulose-phosphate 3-epimerase — —
Pseudomonas fluorescens SBW25-INTG 0.74 PFLU_RS26195 serine hydroxymethyltransferase 0.71 PFLU_RS27390 ribulose-phosphate 3-epimerase — —
Pseudomonas fluorescens SBW25 0.74 PFLU_RS26195 serine hydroxymethyltransferase 0.71 PFLU_RS27390 ribulose-phosphate 3-epimerase — —
Pseudomonas fluorescens GW456-L13 0.74 PfGW456L13_1451 Serine hydroxymethyltransferase (EC 2.1.2.1) 0.70 PfGW456L13_1215 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) — —
Pseudomonas stutzeri RCH2 0.74 Psest_3404 Glycine/serine hydroxymethyltransferase 0.71 Psest_3652 ribulose-phosphate 3-epimerase — —
Pseudomonas fluorescens FW300-N1B4 0.74 Pf1N1B4_2778 Serine hydroxymethyltransferase (EC 2.1.2.1) 0.71 Pf1N1B4_2543 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) — —
Pseudomonas segetis P6 0.74 MPMX49_03979 Serine hydroxymethyltransferase 0.71 MPMX49_00887 Ribulose-phosphate 3-epimerase — —
Marinobacter adhaerens HP15 0.74 HP15_489 glycine hydroxymethyltransferase 0.69 HP15_3286 ribulose-phosphate 3-epimerase-like protein — —
Pseudomonas aeruginosa PUPa3 0.74 DQ20_RS55885 glyA;go_function=glycine serine hydroxymethyltransferase 0.70 DQ20_RS36285 rpe;go_function=D-ribulose-phosphate ribulose-phosphate 3-epimerase — —
Pseudomonas aeruginosa MRSN321 0.74 DY961_RS23420 glyA;go_function=glycine serine hydroxymethyltransferase 0.70 DY961_RS23065 rpe;go_function=D-ribulose-phosphate ribulose-phosphate 3-epimerase — —
Pseudomonas aeruginosa PA14 0.73 IKLFDK_00500 Serine hydroxymethyltransferase 3 0.70 IKLFDK_22375 ribulose-phosphate 3-epimerase — —
Alteromonas macleodii MIT1002 0.73 MIT1002_02702 Serine hydroxymethyltransferase 0.74 MIT1002_00441 Ribulose-phosphate 3-epimerase — —
Kangiella aquimarina DSM 16071 0.72 B158DRAFT_1908 Glycine/serine hydroxymethyltransferase 0.69 B158DRAFT_0267 ribulose-phosphate 3-epimerase — —
Rhodanobacter denitrificans MT42 0.72 LRK55_RS04400 serine hydroxymethyltransferase 0.64 LRK55_RS11120 ribulose-phosphate 3-epimerase — —
Rhodanobacter denitrificans FW104-10B01 0.72 LRK54_RS04625 serine hydroxymethyltransferase 0.63 LRK54_RS11390 ribulose-phosphate 3-epimerase — —
Dyella japonica UNC79MFTsu3.2 0.72 ABZR86_RS10715 serine hydroxymethyltransferase 0.71 ABZR86_RS12200 ribulose-phosphate 3-epimerase low > 74
Rhodanobacter sp000427505 FW510-R12 0.72 LRK53_RS05390 serine hydroxymethyltransferase 0.66 LRK53_RS17105 ribulose-phosphate 3-epimerase 0.68 54
Rhodanobacter sp. FW510-T8 0.72 OKGIIK_11440 glyA serine hydroxymethyltransferase 0.62 OKGIIK_12435 rpe ribulose-phosphate 3-epimerase — —
Xanthomonas campestris pv. campestris strain 8004 0.71 Xcc-8004.4398.1 Serine hydroxymethyltransferase (EC 2.1.2.1) 0.64 Xcc-8004.605.1 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) — —
Acinetobacter radioresistens SK82 0.71 MPMX26_02049 Serine hydroxymethyltransferase 0.73 MPMX26_02569 Ribulose-phosphate 3-epimerase — —
Lysobacter sp. OAE881 0.71 ABIE51_RS04620 serine hydroxymethyltransferase 0.66 ABIE51_RS04135 ribulose-phosphate 3-epimerase — —
Paraburkholderia sabiae LMG 24235 0.70 QEN71_RS33600 serine hydroxymethyltransferase 0.66 QEN71_RS27540 ribulose-phosphate 3-epimerase — —
Acinetobacter baumannii LAC-4 0.70 RR41_RS06055 serine hydroxymethyltransferase 0.75 RR41_RS15745 ribulose-phosphate 3-epimerase — —
Castellaniella sp019104865 MT123 0.69 ABCV34_RS06400 serine hydroxymethyltransferase 0.59 ABCV34_RS10270 ribulose-phosphate 3-epimerase — —
Dechlorosoma suillum PS 0.64 Dsui_1265 glycine/serine hydroxymethyltransferase 0.66 Dsui_0221 ribulose-phosphate 3-epimerase — —
Methylophilus sp. DMC18 0.64 GFF72 Serine hydroxymethyltransferase 0.64 GFF2051 Ribulose-phosphate 3-epimerase — —
Burkholderia phytofirmans PsJN 0.63 BPHYT_RS03725 serine hydroxymethyltransferase 0.67 BPHYT_RS17380 ribulose-phosphate 3-epimerase low > 109
Paraburkholderia graminis OAS925 0.63 ABIE53_000888 glycine hydroxymethyltransferase 0.66 ABIE53_003638 ribulose-phosphate 3-epimerase — —
Paraburkholderia bryophila 376MFSha3.1 0.63 H281DRAFT_04726 serine hydroxymethyltransferase 0.66 H281DRAFT_05717 ribulose-5-phosphate 3-epimerase — —
Acidovorax sp. GW101-3H11 0.63 Ac3H11_2921 Serine hydroxymethyltransferase (EC 2.1.2.1) 0.57 Ac3H11_757 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) — —
Herbaspirillum seropedicae SmR1 0.62 HSERO_RS06140 serine hydroxymethyltransferase 0.67 HSERO_RS19425 ribulose-phosphate 3-epimerase — —
Ralstonia solanacearum GMI1000 0.62 RS_RS03670 serine hydroxymethyltransferase 0.63 RS_RS14420 ribulose-phosphate 3-epimerase — —
Variovorax sp. OAS795 0.62 ABID97_RS17890 serine hydroxymethyltransferase 0.59 ABID97_RS04905 ribulose-phosphate 3-epimerase — —
Ralstonia sp. UNC404CL21Col 0.62 ABZR87_RS08955 serine hydroxymethyltransferase 0.64 ABZR87_RS02130 ribulose-phosphate 3-epimerase — —
Variovorax sp. SCN45 0.62 GFF560 Serine hydroxymethyltransferase (EC 2.1.2.1) 0.59 GFF6246 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) — —
Ralstonia solanacearum IBSBF1503 0.62 RALBFv3_RS12895 serine hydroxymethyltransferase 0.64 RALBFv3_RS06475 ribulose-phosphate 3-epimerase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.62 GFF5152 Serine hydroxymethyltransferase (EC 2.1.2.1) 0.60 GFF2197 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) — —
Ralstonia solanacearum UW163 0.62 UW163_RS00670 serine hydroxymethyltransferase 0.64 UW163_RS07150 ribulose-phosphate 3-epimerase — —
Cupriavidus basilensis FW507-4G11 0.62 RR42_RS15485 serine hydroxymethyltransferase 0.68 RR42_RS18285 ribulose-phosphate 3-epimerase — —
Ralstonia solanacearum PSI07 0.62 RPSI07_RS20330 serine hydroxymethyltransferase 0.64 RPSI07_RS10765 ribulose-phosphate 3-epimerase — —
Synechocystis sp000284455 PCC 6803 0.57 SGL_RS04690 serine hydroxymethyltransferase 0.46 SGL_RS09950 ribulose-phosphate 3-epimerase — —
Desulfovibrio vulgaris Miyazaki F 0.57 DvMF_3097 glyA serine hydroxymethyltransferase (RefSeq) 0.38 DvMF_0977 Ribulose-phosphate 3-epimerase (RefSeq) — —
Desulfovibrio vulgaris Hildenborough JW710 0.56 DVU1203 glyA serine hydroxymethyltransferase (TIGR) 0.44 DVU2531 rpe ribulose-phosphate 3-epimerase (TIGR) — —
Cellulophaga baltica 18 0.54 M666_RS14985 serine hydroxymethyltransferase 0.41 M666_RS08505 ribulose-phosphate 3-epimerase — —
Phocaeicola vulgatus CL09T03C04 0.54 HMPREF1058_RS03800 serine hydroxymethyltransferase 0.42 HMPREF1058_RS07710 ribulose-phosphate 3-epimerase — —
Phocaeicola dorei CL03T12C01 0.54 ABI39_RS17420 serine hydroxymethyltransferase 0.41 ABI39_RS00225 ribulose-phosphate 3-epimerase — —
Parabacteroides merdae CL09T00C40 0.53 HMPREF1078_RS02145 serine hydroxymethyltransferase 0.39 HMPREF1078_RS00800 ribulose-phosphate 3-epimerase — —
Bacteroides ovatus ATCC 8483 0.53 BACOVA_02446 glycine hydroxymethyltransferase 0.40 BACOVA_01203 ribulose-phosphate 3-epimerase — —
Bacteroides stercoris CC31F 0.53 HMPREF1181_RS15010 serine hydroxymethyltransferase 0.39 HMPREF1181_RS06505 ribulose-phosphate 3-epimerase low > 56
Bacteroides thetaiotaomicron VPI-5482 0.53 BT0738 serine hydroxymethyltransferase (NCBI ptt file) 0.40 BT3946 ribulose-phosphate 3-epimerase (NCBI ptt file) — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.51 Echvi_1188 Glycine/serine hydroxymethyltransferase 0.41 Echvi_3575 ribulose-phosphate 3-epimerase 0.85 29
Pontibacter actiniarum KMM 6156, DSM 19842 0.50 CA264_17045 serine hydroxymethyltransferase 0.42 CA264_21180 ribulose-phosphate 3-epimerase low > 74
Pedobacter sp. GW460-11-11-14-LB5 0.50 CA265_RS19165 serine hydroxymethyltransferase 0.43 CA265_RS08990 ribulose-phosphate 3-epimerase — —

Not shown: 0 genomes with orthologs for CSW01_04820 only; 23 genomes with orthologs for CSW01_13285 only