Conservation of cofitness between CSW01_04845 and CSW01_12250 in Vibrio cholerae E7946 ATCC 55056

97 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_04845 D-alanyl-D-alanine carboxypeptidase 1.0 CSW01_12250 site-specific tyrosine recombinase XerD 0.73 4
Shewanella sp. ANA-3 0.69 Shewana3_0991 penicillin-binding protein 6 (RefSeq) 0.56 Shewana3_3331 tyrosine recombinase XerD (RefSeq) low > 73
Shewanella oneidensis MR-1 0.69 SO1164 dacA-1 D-alanyl-D-alanine carboxypeptidase (NCBI ptt file) 0.56 SO0950 xerD integrase/recombinase XerD (NCBI ptt file) — —
Shewanella amazonensis SB2B 0.69 Sama_2592 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) 0.55 Sama_2739 integrase/recombinase XerD (RefSeq) — —
Shewanella loihica PV-4 0.68 Shew_2939 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) 0.54 Shew_0770 tyrosine recombinase XerD (RefSeq) low > 60
Alteromonas macleodii MIT1002 0.62 MIT1002_01848 D-alanyl-D-alanine carboxypeptidase DacC precursor 0.55 MIT1002_00786 Tyrosine recombinase XerD — —
Pectobacterium carotovorum WPP14 0.58 HER17_RS15260 D-alanyl-D-alanine carboxypeptidase DacA 0.71 HER17_RS17890 site-specific tyrosine recombinase XerD low > 75
Pantoea sp. MT58 0.57 IAI47_14040 D-alanyl-D-alanine carboxypeptidase DacA 0.69 IAI47_03820 site-specific tyrosine recombinase XerD low > 76
Dickeya dianthicola 67-19 0.57 HGI48_RS06200 D-alanyl-D-alanine carboxypeptidase DacA 0.68 HGI48_RS03440 site-specific tyrosine recombinase XerD low > 71
Rahnella sp. WP5 0.57 EX31_RS23105 D-alanyl-D-alanine carboxypeptidase DacA 0.70 EX31_RS13480 site-specific tyrosine recombinase XerD low > 89
Dickeya dadantii 3937 0.57 DDA3937_RS06155 D-alanyl-D-alanine carboxypeptidase DacA 0.68 DDA3937_RS03300 site-specific tyrosine recombinase XerD low > 74
Pantoea agglomerans CFBP13505 P0401 0.56 PagCFBP13505_RS03265 D-alanyl-D-alanine carboxypeptidase DacA 0.69 PagCFBP13505_RS15880 site-specific tyrosine recombinase XerD low > 74
Erwinia tracheiphila HP pepo 2.2 0.56 IJEDHG_02480 D-alanyl-D-alanine carboxypeptidase DacC 0.71 IJEDHG_03195 xerD site-specific tyrosine recombinase XerD — —
Dickeya dianthicola ME23 0.56 DZA65_RS06545 D-alanyl-D-alanine carboxypeptidase DacA 0.68 DZA65_RS03485 site-specific tyrosine recombinase XerD — —
Erwinia tracheiphila SCR3 0.56 LU632_RS16390 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.70 LU632_RS05975 xerD site-specific tyrosine recombinase XerD — —
Serratia liquefaciens MT49 0.56 IAI46_05915 D-alanyl-D-alanine carboxypeptidase DacA 0.69 IAI46_20730 site-specific tyrosine recombinase XerD low > 87
Klebsiella pneumoniae MKP103 0.55 KDGMDA_16380 D-alanyl-D-alanine carboxypeptidase DacA 0.68 KDGMDA_04300 site-specific tyrosine recombinase XerD low > 95
Erwinia amylovora T8 0.55 OLJFJH_17245 D-alanyl-D-alanine carboxypeptidase DacA 0.70 OLJFJH_08835 site-specific tyrosine recombinase XerD low > 58
Escherichia coli Nissle 1917 0.55 ECOLIN_RS03445 D-alanyl-D-alanine carboxypeptidase DacA 0.67 ECOLIN_RS16125 site-specific tyrosine recombinase XerD — —
Escherichia coli ECRC102 0.55 NIAGMN_05435 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.67 NIAGMN_17335 xerD site-specific tyrosine recombinase XerD — —
Escherichia coli BL21 0.55 ECD_00601 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) 0.67 ECD_02726 site-specific tyrosine recombinase low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.55 OHPLBJKB_03074 D-alanyl-D-alanine carboxypeptidase DacA 0.67 OHPLBJKB_00821 Tyrosine recombinase XerD low > 74
Enterobacter sp. TBS_079 0.55 MPMX20_01291 D-alanyl-D-alanine carboxypeptidase DacA 0.68 MPMX20_03753 Tyrosine recombinase XerD low > 85
Escherichia coli ECRC62 0.55 BNILDI_21765 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.67 BNILDI_10025 xerD site-specific tyrosine recombinase XerD low > 75
Escherichia coli ECRC98 0.55 JDDGAC_11025 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.67 JDDGAC_23210 xerD site-specific tyrosine recombinase XerD — —
Escherichia coli ECOR38 0.55 HEPCGN_00895 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.68 HEPCGN_18860 xerD site-specific tyrosine recombinase XerD low > 88
Escherichia coli ECRC99 0.55 KEDOAH_20590 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.67 KEDOAH_08570 xerD site-specific tyrosine recombinase XerD — —
Escherichia coli BW25113 0.55 b0632 dacA D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) (NCBI) 0.67 b2894 xerD site-specific tyrosine recombinase XerD (NCBI) low > 76
Escherichia coli ECRC101 0.55 MCAODC_26595 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.67 MCAODC_10090 xerD site-specific tyrosine recombinase XerD — —
Klebsiella michiganensis M5al 0.55 BWI76_RS08020 serine-type D-Ala-D-Ala carboxypeptidase 0.68 BWI76_RS23815 site-specific tyrosine recombinase XerD — —
Escherichia coli ECRC100 0.55 OKFHMN_07380 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.67 OKFHMN_19570 xerD site-specific tyrosine recombinase XerD — —
Escherichia coli ECOR27 0.55 NOLOHH_23755 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.67 NOLOHH_11495 xerD site-specific tyrosine recombinase XerD low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.55 GFF4545 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.67 GFF2991 Tyrosine recombinase XerD low > 78
Enterobacter asburiae PDN3 0.55 EX28DRAFT_2331 D-alanyl-D-alanine carboxypeptidase 0.68 EX28DRAFT_2945 tyrosine recombinase XerD low > 76
Escherichia fergusonii Becca 0.54 EFB2_03460 D-alanyl-D-alanine carboxypeptidase DacA 0.67 EFB2_01007 Tyrosine recombinase XerD low > 86
Kangiella aquimarina DSM 16071 0.50 B158DRAFT_0079 D-alanyl-D-alanine carboxypeptidase 0.51 B158DRAFT_2265 tyrosine recombinase XerD — —
Pseudomonas syringae pv. syringae B728a 0.47 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 0.57 Psyr_1286 tyrosine recombinase XerD subunit low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.47 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 0.57 Psyr_1286 tyrosine recombinase XerD subunit low > 86
Pseudomonas sp. RS175 0.47 PFR28_03864 D-alanyl-D-alanine carboxypeptidase DacC 0.58 PFR28_00331 Tyrosine recombinase XerD low > 88
Pseudomonas fluorescens FW300-N2C3 0.46 AO356_15330 D-alanyl-D-alanine carboxypeptidase 0.58 AO356_06385 recombinase XerD low > 104
Pseudomonas fluorescens FW300-N2E2 0.46 Pf6N2E2_5001 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.58 Pf6N2E2_3145 Tyrosine recombinase XerD — —
Pseudomonas fluorescens FW300-N1B4 0.46 Pf1N1B4_2696 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.57 Pf1N1B4_3011 Tyrosine recombinase XerD — —
Pseudomonas sp. SVBP6 0.46 COO64_RS15590 D-alanyl-D-alanine carboxypeptidase family protein 0.58 COO64_RS04910 xerD site-specific tyrosine recombinase XerD low > 93
Pseudomonas sp. DMC3 0.46 GFF3884 D-alanyl-D-alanine carboxypeptidase DacC 0.58 GFF1987 Tyrosine recombinase XerD low > 89
Pseudomonas fluorescens FW300-N2E3 0.46 AO353_06455 D-alanyl-D-alanine carboxypeptidase 0.58 AO353_04365 recombinase XerD low > 101
Pseudomonas segetis P6 0.46 MPMX49_01056 D-alanyl-D-alanine carboxypeptidase DacC 0.55 MPMX49_01575 Tyrosine recombinase XerD low > 75
Pseudomonas fluorescens GW456-L13 0.46 PfGW456L13_1364 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.58 PfGW456L13_1721 Tyrosine recombinase XerD — —
Pseudomonas stutzeri RCH2 0.46 Psest_0516 D-alanyl-D-alanine carboxypeptidase 0.54 Psest_3129 tyrosine recombinase XerD low > 67
Pseudomonas fluorescens SBW25 0.46 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase 0.57 PFLU_RS24560 site-specific tyrosine recombinase XerD 0.54 105
Pseudomonas simiae WCS417 0.46 PS417_24705 D-alanyl-D-alanine carboxypeptidase 0.57 PS417_22895 tyrosine recombinase XerD low > 88
Pseudomonas fluorescens SBW25-INTG 0.46 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase 0.57 PFLU_RS24560 site-specific tyrosine recombinase XerD low > 109
Pseudomonas orientalis W4I3 0.46 QF045_RS26990 D-alanyl-D-alanine carboxypeptidase family protein 0.56 QF045_RS25085 site-specific tyrosine recombinase XerD — —
Pseudomonas lactucae CFBP13502 0.46 GEMAOFIL_05094 D-alanyl-D-alanine carboxypeptidase DacC 0.57 GEMAOFIL_04729 Tyrosine recombinase XerD low > 96
Pseudomonas sp. BP01 0.45 JOY50_RS17720 D-alanyl-D-alanine carboxypeptidase family protein 0.58 JOY50_RS11700 xerD site-specific tyrosine recombinase XerD low > 84
Pseudomonas putida KT2440 0.45 PP_4803 D-alanyl-D-alanine carboxypeptidase 0.58 PP_1468 Tyrosine recombinase XerD low > 96
Pseudomonas sp. S08-1 0.45 OH686_09300 D-alanyl-D-alanine carboxypeptidase 0.56 OH686_17750 tyrosine recombinase XerD low > 80
Marinobacter adhaerens HP15 0.45 HP15_608 serine-type D-Ala-D-Ala carboxypeptidase 0.53 HP15_762 site-specific tyrosine recombinase XerD — —
Pseudomonas aeruginosa PUPa3 0.45 DQ20_RS48190 D-alanyl-D-alanine carboxypeptidase family protein 0.56 DQ20_RS42845 xerD;go_function=site-specific site-specific tyrosine recombinase XerD low > 101
Pseudomonas aeruginosa MRSN321 0.45 DY961_RS12860 D-alanyl-D-alanine carboxypeptidase family protein 0.56 DY961_RS14280 xerD;go_function=site-specific site-specific tyrosine recombinase XerD low > 100
Pseudomonas aeruginosa PA14 0.45 IKLFDK_20625 serine-type D-Ala-D-Ala carboxypeptidase 0.56 IKLFDK_19085 site-specific tyrosine recombinase XerD — —
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.907.1 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.48 Xcc-8004.4441.1 Tyrosine recombinase XerD low > 74
Rhodanobacter sp. FW510-T8 0.42 OKGIIK_00090 serine-type D-Ala-D-Ala carboxypeptidase 0.44 OKGIIK_11520 xerD site-specific tyrosine recombinase XerD low > 53
Rhodanobacter sp000427505 FW510-R12 0.41 LRK53_RS17780 D-alanyl-D-alanine carboxypeptidase 0.43 LRK53_RS05285 site-specific tyrosine recombinase XerD — —
Rhodanobacter denitrificans MT42 0.41 LRK55_RS06235 D-alanyl-D-alanine carboxypeptidase family protein 0.44 LRK55_RS04515 site-specific tyrosine recombinase XerD — —
Rhodanobacter denitrificans FW104-10B01 0.41 LRK54_RS06490 D-alanyl-D-alanine carboxypeptidase 0.44 LRK54_RS04735 site-specific tyrosine recombinase XerD low > 59
Dyella japonica UNC79MFTsu3.2 0.41 ABZR86_RS17490 D-alanyl-D-alanine carboxypeptidase family protein 0.46 ABZR86_RS19225 site-specific tyrosine recombinase XerD — —
Lysobacter sp. OAE881 0.40 ABIE51_RS03165 D-alanyl-D-alanine carboxypeptidase family protein 0.54 ABIE51_RS04495 site-specific tyrosine recombinase XerD low > 62
Acinetobacter baumannii LAC-4 0.40 RR41_RS05330 D-alanyl-D-alanine carboxypeptidase PBP5/6 0.44 RR41_RS17765 site-specific tyrosine recombinase XerD — —
Cupriavidus basilensis FW507-4G11 0.39 RR42_RS01680 cytochrome C550 0.48 RR42_RS03345 recombinase XerD low > 128
Methylophilus sp. DMC18 0.39 GFF2179 D-alanyl-D-alanine carboxypeptidase DacC 0.50 GFF2342 Tyrosine recombinase XerD low > 43
Rhodospirillum rubrum S1H 0.38 Rru_A1704 Serine-type D-Ala-D-Ala carboxypeptidase (NCBI) 0.33 Rru_A3738 Phage integrase (NCBI) — —
Dechlorosoma suillum PS 0.37 Dsui_0899 D-alanyl-D-alanine carboxypeptidase 0.49 Dsui_1217 tyrosine recombinase XerD low > 51
Burkholderia phytofirmans PsJN 0.37 BPHYT_RS02415 cytochrome C550 0.51 BPHYT_RS15950 tyrosine recombinase XerD low > 109
Ralstonia solanacearum PSI07 0.36 RPSI07_RS22545 D-alanyl-D-alanine carboxypeptidase 0.51 RPSI07_RS12160 site-specific tyrosine recombinase XerD low > 81
Paraburkholderia bryophila 376MFSha3.1 0.36 H281DRAFT_02054 penicillin-binding protein 6. Serine peptidase. MEROPS family S11 0.50 H281DRAFT_04126 integrase/recombinase XerD — —
Paraburkholderia sabiae LMG 24235 0.36 QEN71_RS01300 D-alanyl-D-alanine carboxypeptidase family protein 0.50 QEN71_RS02755 site-specific tyrosine recombinase XerD — —
Ralstonia sp. UNC404CL21Col 0.36 ABZR87_RS06610 D-alanyl-D-alanine carboxypeptidase family protein 0.46 ABZR87_RS00795 site-specific tyrosine recombinase XerD low > 80
Paraburkholderia graminis OAS925 0.36 ABIE53_000626 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) 0.50 ABIE53_003361 integrase/recombinase XerD low > 113
Herbaspirillum seropedicae SmR1 0.35 HSERO_RS21530 cytochrome C550 0.48 HSERO_RS04265 tyrosine recombinase XerD low > 78
Ralstonia solanacearum GMI1000 0.35 RS_RS01610 D-alanyl-D-alanine carboxypeptidase 0.50 RS_RS12755 tyrosine recombinase XerD — —
Azospirillum sp. SherDot2 0.35 MPMX19_01465 D-alanyl-D-alanine carboxypeptidase DacC 0.38 MPMX19_02643 Tyrosine recombinase XerD — —
Castellaniella sp019104865 MT123 0.34 ABCV34_RS13340 D-alanyl-D-alanine carboxypeptidase family protein 0.50 ABCV34_RS00515 site-specific tyrosine recombinase XerD low > 48
Ralstonia solanacearum UW163 0.34 UW163_RS02810 D-alanyl-D-alanine carboxypeptidase 0.50 UW163_RS08485 site-specific tyrosine recombinase XerD — —
Ralstonia solanacearum IBSBF1503 0.34 RALBFv3_RS10770 D-alanyl-D-alanine carboxypeptidase 0.50 RALBFv3_RS05140 site-specific tyrosine recombinase XerD low > 76
Hydrogenophaga sp. GW460-11-11-14-LB1 0.33 GFF1806 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.46 GFF5461 Tyrosine recombinase XerD low > 90
Azospirillum brasilense Sp245 0.33 AZOBR_RS08775 D-alanyl-D-alanine carboxypeptidase 0.34 AZOBR_RS03240 recombinase XerD — —
Acidovorax sp. GW101-3H11 0.32 Ac3H11_2142 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.48 Ac3H11_302 Tyrosine recombinase XerD — —
Variovorax sp. OAS795 0.32 ABID97_RS00695 D-alanyl-D-alanine carboxypeptidase family protein 0.47 ABID97_RS20265 site-specific tyrosine recombinase XerD low > 91
Bosea sp. OAE506 0.30 ABIE41_RS15965 D-alanyl-D-alanine carboxypeptidase family protein 0.32 ABIE41_RS06100 site-specific tyrosine recombinase XerD — —
Magnetospirillum magneticum AMB-1 0.30 AMB_RS12315 D-alanyl-D-alanine carboxypeptidase 0.31 AMB_RS19880 site-specific tyrosine recombinase XerD low > 64
Sphingobium sp. HT1-2 0.29 GFF5300 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.30 GFF2416 Site-specific tyrosine recombinase XerD — —
Sphingomonas koreensis DSMZ 15582 0.28 Ga0059261_0122 D-alanyl-D-alanine carboxypeptidase 0.30 Ga0059261_3595 Site-specific recombinase XerD — —
Phaeobacter inhibens DSM 17395 0.26 PGA1_c08020 D-alanyl-D-alanine carboxypeptidase DacC 0.31 PGA1_c14060 tyrosine recombinase XerD — —
Xanthobacter sp. DMC5 0.26 GFF689 D-alanyl-D-alanine carboxypeptidase DacC 0.35 GFF3081 Tyrosine recombinase XerD — —
Rhodopseudomonas palustris CGA009 0.26 TX73_014370 D-alanyl-D-alanine carboxypeptidase 0.36 TX73_002625 site-specific tyrosine recombinase XerD low > 86
Dinoroseobacter shibae DFL-12 0.25 Dshi_0923 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) 0.33 Dshi_1611 integrase family protein (RefSeq) — —
Sinorhizobium meliloti 1021 0.22 SMc01188 penicillin-binding precursor (D-alanyl-D-alanine carboxypeptidase fraction A) transmembrane protein 0.36 SMc00691 site-specific tyrosine recombinase XerD — —
Agrobacterium fabrum C58 0.21 Atu1499 penicillin binding protein 0.35 Atu3629 site-specific tyrosine recombinase XerD — —

Not shown: 1 genomes with orthologs for CSW01_04845 only; 22 genomes with orthologs for CSW01_12250 only