Conservation of cofitness between CSW01_04845 and CSW01_09245 in Vibrio cholerae E7946 ATCC 55056

98 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_04845 D-alanyl-D-alanine carboxypeptidase 1.0 CSW01_09245 Holliday junction branch migration protein RuvA 0.67 9
Shewanella sp. ANA-3 0.69 Shewana3_0991 penicillin-binding protein 6 (RefSeq) 0.62 Shewana3_1956 ruvA Holliday junction DNA helicase RuvA (RefSeq) low > 73
Shewanella oneidensis MR-1 0.69 SO1164 dacA-1 D-alanyl-D-alanine carboxypeptidase (NCBI ptt file) 0.63 SO2430 ruvA Holliday junction DNA helicase RuvA (NCBI ptt file) — —
Shewanella amazonensis SB2B 0.69 Sama_2592 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) 0.60 Sama_1840 ruvA Holliday junction DNA helicase RuvA (RefSeq) — —
Shewanella loihica PV-4 0.68 Shew_2939 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) 0.64 Shew_2076 Holliday junction DNA helicase RuvA (RefSeq) — —
Alteromonas macleodii MIT1002 0.62 MIT1002_01848 D-alanyl-D-alanine carboxypeptidase DacC precursor 0.63 MIT1002_01332 Holliday junction ATP-dependent DNA helicase RuvA — —
Pectobacterium carotovorum WPP14 0.58 HER17_RS15260 D-alanyl-D-alanine carboxypeptidase DacA 0.61 HER17_RS11845 Holliday junction branch migration protein RuvA — —
Rahnella sp. WP5 0.57 EX31_RS23105 D-alanyl-D-alanine carboxypeptidase DacA 0.66 EX31_RS11675 Holliday junction branch migration protein RuvA low > 89
Dickeya dianthicola 67-19 0.57 HGI48_RS06200 D-alanyl-D-alanine carboxypeptidase DacA 0.61 HGI48_RS10110 Holliday junction branch migration protein RuvA — —
Pantoea sp. MT58 0.57 IAI47_14040 D-alanyl-D-alanine carboxypeptidase DacA 0.63 IAI47_08445 Holliday junction branch migration protein RuvA low > 76
Dickeya dadantii 3937 0.57 DDA3937_RS06155 D-alanyl-D-alanine carboxypeptidase DacA 0.61 DDA3937_RS10080 Holliday junction branch migration protein RuvA — —
Pantoea agglomerans CFBP13505 P0401 0.56 PagCFBP13505_RS03265 D-alanyl-D-alanine carboxypeptidase DacA 0.59 PagCFBP13505_RS02325 Holliday junction branch migration protein RuvA — —
Erwinia tracheiphila HP pepo 2.2 0.56 IJEDHG_02480 D-alanyl-D-alanine carboxypeptidase DacC 0.61 IJEDHG_22135 ruvA Holliday junction branch migration protein RuvA — —
Erwinia tracheiphila SCR3 0.56 LU632_RS16390 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.60 LU632_RS13415 ruvA Holliday junction branch migration protein RuvA — —
Dickeya dianthicola ME23 0.56 DZA65_RS06545 D-alanyl-D-alanine carboxypeptidase DacA 0.61 DZA65_RS10525 Holliday junction branch migration protein RuvA — —
Serratia liquefaciens MT49 0.56 IAI46_05915 D-alanyl-D-alanine carboxypeptidase DacA 0.60 IAI46_14625 Holliday junction branch migration protein RuvA — —
Klebsiella pneumoniae MKP103 0.55 KDGMDA_16380 D-alanyl-D-alanine carboxypeptidase DacA 0.66 KDGMDA_25415 Holliday junction branch migration protein RuvA 0.58 75
Erwinia amylovora T8 0.55 OLJFJH_17245 D-alanyl-D-alanine carboxypeptidase DacA 0.62 OLJFJH_12855 Holliday junction branch migration protein RuvA — —
Escherichia coli ECRC100 0.55 OKFHMN_07380 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.66 OKFHMN_26280 ruvA Holliday junction branch migration protein RuvA — —
Escherichia coli ECOR38 0.55 HEPCGN_00895 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.66 HEPCGN_04690 ruvA Holliday junction branch migration protein RuvA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.55 OHPLBJKB_03074 D-alanyl-D-alanine carboxypeptidase DacA 0.67 OHPLBJKB_01867 Holliday junction ATP-dependent DNA helicase RuvA — —
Escherichia coli BL21 0.55 ECD_00601 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) 0.67 ECD_01832 component of RuvABC resolvasome, regulatory subunit — —
Escherichia coli Nissle 1917 0.55 ECOLIN_RS03445 D-alanyl-D-alanine carboxypeptidase DacA 0.67 ECOLIN_RS10365 Holliday junction branch migration protein RuvA — —
Klebsiella michiganensis M5al 0.55 BWI76_RS08020 serine-type D-Ala-D-Ala carboxypeptidase 0.65 BWI76_RS18150 Holliday junction branch migration protein RuvA — —
Escherichia coli ECRC101 0.55 MCAODC_26595 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.66 MCAODC_19125 ruvA Holliday junction branch migration protein RuvA — —
Escherichia coli ECRC62 0.55 BNILDI_21765 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.67 BNILDI_15515 ruvA Holliday junction branch migration protein RuvA — —
Escherichia coli ECRC99 0.55 KEDOAH_20590 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.66 KEDOAH_01825 ruvA Holliday junction branch migration protein RuvA — —
Escherichia coli ECRC98 0.55 JDDGAC_11025 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.66 JDDGAC_00855 ruvA Holliday junction branch migration protein RuvA — —
Enterobacter sp. TBS_079 0.55 MPMX20_01291 D-alanyl-D-alanine carboxypeptidase DacA 0.66 MPMX20_02767 Holliday junction ATP-dependent DNA helicase RuvA low > 85
Escherichia coli ECRC102 0.55 NIAGMN_05435 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.66 NIAGMN_01780 ruvA Holliday junction branch migration protein RuvA — —
Escherichia coli BW25113 0.55 b0632 dacA D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) (NCBI) 0.67 b1861 ruvA Holliday junction DNA helicase motor protein (NCBI) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.55 GFF4545 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.65 GFF1640 Holliday junction DNA helicase RuvA — —
Escherichia coli ECOR27 0.55 NOLOHH_23755 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.66 NOLOHH_16725 ruvA Holliday junction branch migration protein RuvA — —
Enterobacter asburiae PDN3 0.55 EX28DRAFT_2331 D-alanyl-D-alanine carboxypeptidase 0.66 EX28DRAFT_0695 Holliday junction DNA helicase subunit RuvA — —
Escherichia fergusonii Becca 0.54 EFB2_03460 D-alanyl-D-alanine carboxypeptidase DacA 0.67 EFB2_02081 Holliday junction ATP-dependent DNA helicase RuvA — —
Kangiella aquimarina DSM 16071 0.50 B158DRAFT_0079 D-alanyl-D-alanine carboxypeptidase 0.53 B158DRAFT_1125 Holliday junction DNA helicase subunit RuvA — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.47 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 0.55 Psyr_1409 Holliday junction DNA helicase subunit RuvA low > 86
Pseudomonas syringae pv. syringae B728a 0.47 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 0.55 Psyr_1409 Holliday junction DNA helicase subunit RuvA — —
Pseudomonas sp. RS175 0.47 PFR28_03864 D-alanyl-D-alanine carboxypeptidase DacC 0.55 PFR28_03413 Holliday junction ATP-dependent DNA helicase RuvA low > 88
Pseudomonas fluorescens FW300-N1B4 0.46 Pf1N1B4_2696 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.55 Pf1N1B4_638 Holliday junction DNA helicase RuvA — —
Pseudomonas fluorescens FW300-N2E2 0.46 Pf6N2E2_5001 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.55 Pf6N2E2_5536 Holliday junction DNA helicase RuvA low > 103
Pseudomonas fluorescens FW300-N2C3 0.46 AO356_15330 D-alanyl-D-alanine carboxypeptidase 0.55 AO356_18020 ATP-dependent DNA helicase RuvA low > 104
Pseudomonas segetis P6 0.46 MPMX49_01056 D-alanyl-D-alanine carboxypeptidase DacC 0.57 MPMX49_01684 Holliday junction ATP-dependent DNA helicase RuvA 0.56 35
Pseudomonas fluorescens FW300-N2E3 0.46 AO353_06455 D-alanyl-D-alanine carboxypeptidase 0.55 AO353_03585 ATP-dependent DNA helicase RuvA low > 101
Pseudomonas sp. DMC3 0.46 GFF3884 D-alanyl-D-alanine carboxypeptidase DacC 0.55 GFF5185 Holliday junction ATP-dependent DNA helicase RuvA low > 89
Pseudomonas sp. SVBP6 0.46 COO64_RS15590 D-alanyl-D-alanine carboxypeptidase family protein 0.56 COO64_RS20095 ruvA Holliday junction branch migration protein RuvA low > 93
Pseudomonas fluorescens GW456-L13 0.46 PfGW456L13_1364 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.54 PfGW456L13_1852 Holliday junction DNA helicase RuvA — —
Pseudomonas stutzeri RCH2 0.46 Psest_0516 D-alanyl-D-alanine carboxypeptidase 0.56 Psest_1496 Holliday junction DNA helicase, RuvA subunit low > 67
Pseudomonas simiae WCS417 0.46 PS417_24705 D-alanyl-D-alanine carboxypeptidase 0.52 PS417_22450 ATP-dependent DNA helicase RuvA low > 88
Pseudomonas fluorescens SBW25-INTG 0.46 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase 0.52 PFLU_RS24090 Holliday junction branch migration protein RuvA low > 109
Pseudomonas fluorescens SBW25 0.46 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase 0.52 PFLU_RS24090 Holliday junction branch migration protein RuvA 0.56 71
Pseudomonas orientalis W4I3 0.46 QF045_RS26990 D-alanyl-D-alanine carboxypeptidase family protein 0.53 QF045_RS24615 Holliday junction branch migration protein RuvA — —
Pseudomonas lactucae CFBP13502 0.46 GEMAOFIL_05094 D-alanyl-D-alanine carboxypeptidase DacC 0.52 GEMAOFIL_04642 Holliday junction ATP-dependent DNA helicase RuvA low > 96
Pseudomonas sp. BP01 0.45 JOY50_RS17720 D-alanyl-D-alanine carboxypeptidase family protein 0.57 JOY50_RS01820 ruvA Holliday junction branch migration protein RuvA low > 84
Pseudomonas putida KT2440 0.45 PP_4803 D-alanyl-D-alanine carboxypeptidase 0.57 PP_1216 Holliday junction ATP-dependent DNA helicase RuvA low > 96
Pseudomonas sp. S08-1 0.45 OH686_09300 D-alanyl-D-alanine carboxypeptidase 0.55 OH686_19130 Holliday junction DNA helicase RuvA — —
Marinobacter adhaerens HP15 0.45 HP15_608 serine-type D-Ala-D-Ala carboxypeptidase 0.52 HP15_2041 Holliday junction ATP-dependent DNA helicase RuvA — —
Pseudomonas aeruginosa MRSN321 0.45 DY961_RS12860 D-alanyl-D-alanine carboxypeptidase family protein 0.56 DY961_RS07600 ruvA;go_component=Holliday Holliday junction branch migration protein RuvA — —
Pseudomonas aeruginosa PUPa3 0.45 DQ20_RS48190 D-alanyl-D-alanine carboxypeptidase family protein 0.56 DQ20_RS45190 ruvA;go_component=Holliday Holliday junction branch migration protein RuvA low > 101
Pseudomonas aeruginosa PA14 0.45 IKLFDK_20625 serine-type D-Ala-D-Ala carboxypeptidase 0.56 IKLFDK_04370 Holliday junction branch migration protein RuvA — —
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.907.1 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.42 Xcc-8004.1436.1 Holliday junction DNA helicase RuvA low > 74
Rhodanobacter sp. FW510-T8 0.42 OKGIIK_00090 serine-type D-Ala-D-Ala carboxypeptidase 0.45 OKGIIK_01840 ruvA Holliday junction branch migration protein RuvA — —
Rhodanobacter sp000427505 FW510-R12 0.41 LRK53_RS17780 D-alanyl-D-alanine carboxypeptidase 0.46 LRK53_RS05120 Holliday junction branch migration protein RuvA — —
Rhodanobacter denitrificans FW104-10B01 0.41 LRK54_RS06490 D-alanyl-D-alanine carboxypeptidase 0.48 LRK54_RS04910 Holliday junction branch migration protein RuvA — —
Rhodanobacter denitrificans MT42 0.41 LRK55_RS06235 D-alanyl-D-alanine carboxypeptidase family protein 0.48 LRK55_RS04690 Holliday junction branch migration protein RuvA — —
Dyella japonica UNC79MFTsu3.2 0.41 ABZR86_RS17490 D-alanyl-D-alanine carboxypeptidase family protein 0.46 ABZR86_RS10840 Holliday junction branch migration protein RuvA — —
Lysobacter sp. OAE881 0.40 ABIE51_RS03165 D-alanyl-D-alanine carboxypeptidase family protein 0.44 ABIE51_RS05045 Holliday junction branch migration protein RuvA low > 62
Acinetobacter baumannii LAC-4 0.40 RR41_RS05330 D-alanyl-D-alanine carboxypeptidase PBP5/6 0.40 RR41_RS04690 Holliday junction branch migration protein RuvA — —
Acinetobacter radioresistens SK82 0.39 MPMX26_01051 D-alanyl-D-alanine carboxypeptidase DacA 0.42 MPMX26_02185 Holliday junction ATP-dependent DNA helicase RuvA low > 36
Cupriavidus basilensis FW507-4G11 0.39 RR42_RS01680 cytochrome C550 0.37 RR42_RS02705 Holliday junction DNA helicase RuvA low > 128
Methylophilus sp. DMC18 0.39 GFF2179 D-alanyl-D-alanine carboxypeptidase DacC 0.42 GFF2326 Holliday junction ATP-dependent DNA helicase RuvA low > 43
Rhodospirillum rubrum S1H 0.38 Rru_A1704 Serine-type D-Ala-D-Ala carboxypeptidase (NCBI) 0.24 Rru_A1088 DNA recombination protein RuvA (NCBI) — —
Dechlorosoma suillum PS 0.37 Dsui_0899 D-alanyl-D-alanine carboxypeptidase 0.43 Dsui_0485 Holliday junction DNA helicase, RuvA subunit — —
Burkholderia phytofirmans PsJN 0.37 BPHYT_RS02415 cytochrome C550 0.41 BPHYT_RS16615 holliday junction ATP-dependent DNA helicase RuvA — —
Ralstonia solanacearum PSI07 0.36 RPSI07_RS22545 D-alanyl-D-alanine carboxypeptidase 0.37 RPSI07_RS21550 Holliday junction branch migration protein RuvA — —
Paraburkholderia sabiae LMG 24235 0.36 QEN71_RS01300 D-alanyl-D-alanine carboxypeptidase family protein 0.37 QEN71_RS26795 Holliday junction branch migration protein RuvA — —
Ralstonia sp. UNC404CL21Col 0.36 ABZR87_RS06610 D-alanyl-D-alanine carboxypeptidase family protein 0.38 ABZR87_RS07625 Holliday junction branch migration protein RuvA low > 80
Paraburkholderia bryophila 376MFSha3.1 0.36 H281DRAFT_02054 penicillin-binding protein 6. Serine peptidase. MEROPS family S11 0.38 H281DRAFT_04254 Holliday junction DNA helicase subunit RuvA — —
Paraburkholderia graminis OAS925 0.36 ABIE53_000626 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) 0.38 ABIE53_003494 Holliday junction DNA helicase RuvA low > 113
Herbaspirillum seropedicae SmR1 0.35 HSERO_RS21530 cytochrome C550 0.37 HSERO_RS02090 Holliday junction DNA helicase RuvA low > 78
Ralstonia solanacearum GMI1000 0.35 RS_RS01610 D-alanyl-D-alanine carboxypeptidase 0.38 RS_RS02490 Holliday junction branch migration protein RuvA — —
Azospirillum sp. SherDot2 0.35 MPMX19_01465 D-alanyl-D-alanine carboxypeptidase DacC 0.19 MPMX19_00697 Holliday junction ATP-dependent DNA helicase RuvA — —
Castellaniella sp019104865 MT123 0.34 ABCV34_RS13340 D-alanyl-D-alanine carboxypeptidase family protein 0.41 ABCV34_RS07980 Holliday junction branch migration protein RuvA low > 48
Ralstonia solanacearum UW163 0.34 UW163_RS02810 D-alanyl-D-alanine carboxypeptidase 0.38 UW163_RS01915 Holliday junction branch migration protein RuvA — —
Ralstonia solanacearum IBSBF1503 0.34 RALBFv3_RS10770 D-alanyl-D-alanine carboxypeptidase 0.38 RALBFv3_RS11670 Holliday junction branch migration protein RuvA — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.33 GFF1806 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.39 GFF1666 Holliday junction DNA helicase RuvA low > 90
Azospirillum brasilense Sp245 0.33 AZOBR_RS08775 D-alanyl-D-alanine carboxypeptidase 0.20 AZOBR_RS09045 Holliday junction DNA helicase RuvA — —
Variovorax sp. OAS795 0.32 ABID97_RS00695 D-alanyl-D-alanine carboxypeptidase family protein 0.39 ABID97_RS24920 Holliday junction branch migration protein RuvA low > 91
Acidovorax sp. GW101-3H11 0.32 Ac3H11_2142 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.37 Ac3H11_4683 Holliday junction DNA helicase RuvA — —
Bosea sp. OAE506 0.30 ABIE41_RS15965 D-alanyl-D-alanine carboxypeptidase family protein 0.23 ABIE41_RS09475 Holliday junction branch migration protein RuvA — —
Magnetospirillum magneticum AMB-1 0.30 AMB_RS12315 D-alanyl-D-alanine carboxypeptidase 0.23 AMB_RS16255 Holliday junction branch migration protein RuvA — —
Sphingobium sp. HT1-2 0.29 GFF5300 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.22 GFF1074 Holliday junction ATP-dependent DNA helicase RuvA (EC 3.6.4.12) — —
Sphingomonas koreensis DSMZ 15582 0.28 Ga0059261_0122 D-alanyl-D-alanine carboxypeptidase 0.24 Ga0059261_0820 Holliday junction DNA helicase subunit RuvA — —
Phaeobacter inhibens DSM 17395 0.26 PGA1_c08020 D-alanyl-D-alanine carboxypeptidase DacC 0.22 PGA1_c05860 holliday junction ATP-dependent DNA helicase RuvA — —
Xanthobacter sp. DMC5 0.26 GFF689 D-alanyl-D-alanine carboxypeptidase DacC 0.26 GFF78 Holliday junction ATP-dependent DNA helicase RuvA — —
Rhodopseudomonas palustris CGA009 0.26 TX73_014370 D-alanyl-D-alanine carboxypeptidase 0.25 TX73_005655 Holliday junction branch migration protein RuvA — —
Dinoroseobacter shibae DFL-12 0.25 Dshi_0923 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) 0.21 Dshi_1104 Holliday junction DNA helicase RuvA (RefSeq) — —
Sinorhizobium meliloti 1021 0.22 SMc01188 penicillin-binding precursor (D-alanyl-D-alanine carboxypeptidase fraction A) transmembrane protein 0.22 SMc03966 Holliday junction DNA helicase RuvA — —
Agrobacterium fabrum C58 0.21 Atu1499 penicillin binding protein 0.22 Atu3723 Holliday junction DNA helicase RuvA — —

Not shown: 0 genomes with orthologs for CSW01_04845 only; 22 genomes with orthologs for CSW01_09245 only