| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_01850 | | protease modulator HflC | 1.0 | CSW01_07190 | | transcriptional regulator FNR | 0.52 | 10 |
| Serratia liquefaciens MT49 | 0.51 | IAI46_01640 | | protease modulator HflC | 0.86 | IAI46_13260 | | FNR family transcription factor | low | > 86 |
| Enterobacter sp. TBS_079 | 0.51 | MPMX20_00456 | | Modulator of FtsH protease HflC | 0.85 | MPMX20_02035 | | Fumarate and nitrate reduction regulatory protein | low | > 85 |
| Shewanella oneidensis MR-1 | 0.50 | SO0606 | hflC | hflC protein (NCBI ptt file) | 0.76 | SO2356 | etrA | electron transport regulator a (NCBI ptt file) | low | > 76 |
| Escherichia coli ECRC102 | 0.50 | NIAGMN_10090 | hflC | protease modulator HflC | 0.85 | NIAGMN_26410 | fnr | fumarate/nitrate reduction transcriptional regulator Fnr | — | — |
| Escherichia coli ECOR38 | 0.50 | HEPCGN_10470 | hflC | protease modulator HflC | 0.85 | HEPCGN_25925 | fnr | fumarate/nitrate reduction transcriptional regulator Fnr | low | > 87 |
| Escherichia coli ECRC101 | 0.50 | MCAODC_02755 | hflC | protease modulator HflC | 0.85 | MCAODC_16030 | fnr | fumarate/nitrate reduction transcriptional regulator Fnr | low | > 87 |
| Escherichia coli ECOR27 | 0.50 | NOLOHH_04505 | hflC | protease modulator HflC | 0.85 | NOLOHH_19940 | fnr | fumarate/nitrate reduction transcriptional regulator Fnr | low | > 75 |
| Escherichia coli Nissle 1917 | 0.50 | ECOLIN_RS24245 | | protease modulator HflC | 0.85 | ECOLIN_RS08005 | | fumarate/nitrate reduction transcriptional regulator Fnr | — | — |
| Escherichia coli ECRC100 | 0.50 | OKFHMN_12240 | hflC | protease modulator HflC | 0.85 | OKFHMN_02240 | fnr | fumarate/nitrate reduction transcriptional regulator Fnr | low | > 80 |
| Escherichia coli ECRC98 | 0.50 | JDDGAC_15880 | hflC | protease modulator HflC | 0.85 | JDDGAC_04785 | fnr | fumarate/nitrate reduction transcriptional regulator Fnr | low | > 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.50 | OHPLBJKB_03867 | | Modulator of FtsH protease HflC | 0.85 | OHPLBJKB_02348 | | Fumarate and nitrate reduction regulatory protein | low | > 73 |
| Escherichia coli BW25113 | 0.50 | b4175 | hflC | modulator for HflB protease specific for phage lambda cII repressor (NCBI) | 0.85 | b1334 | fnr | DNA-binding transcriptional dual regulator, global regulator of anaerobic growth (NCBI) | low | > 76 |
| Escherichia coli ECRC62 | 0.50 | BNILDI_06985 | hflC | protease modulator HflC | 0.85 | BNILDI_18090 | fnr | fumarate/nitrate reduction transcriptional regulator Fnr | 0.69 | 58 |
| Escherichia fergusonii Becca | 0.50 | EFB2_04360 | | Modulator of FtsH protease HflC | 0.85 | EFB2_02593 | | Fumarate and nitrate reduction regulatory protein | low | > 86 |
| Escherichia coli ECRC99 | 0.50 | KEDOAH_15915 | hflC | protease modulator HflC | 0.85 | KEDOAH_26530 | fnr | fumarate/nitrate reduction transcriptional regulator Fnr | — | — |
| Alteromonas macleodii MIT1002 | 0.50 | MIT1002_03785 | | Modulator of FtsH protease HflC | 0.57 | MIT1002_02137 | | Fumarate and nitrate reduction regulatory protein | low | > 70 |
| Pantoea sp. MT58 | 0.50 | IAI47_02605 | | protease modulator HflC | 0.85 | IAI47_09580 | | FNR family transcription factor | low | > 76 |
| Erwinia tracheiphila SCR3 | 0.50 | LU632_RS02070 | hflC | protease modulator HflC | 0.83 | LU632_RS11420 | | FNR family transcription factor | low | > 74 |
| Klebsiella michiganensis M5al | 0.50 | BWI76_RS02550 | | protease modulator HflC | 0.85 | BWI76_RS16185 | | transcriptional regulator FNR | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.50 | GFF828 | | HflC protein | 0.85 | GFF2656 | | Fumarate and nitrate reduction regulatory protein | low | > 78 |
| Pectobacterium carotovorum WPP14 | 0.50 | HER17_RS02600 | | protease modulator HflC | 0.86 | HER17_RS10525 | | fumarate/nitrate reduction transcriptional regulator Fnr | low | > 75 |
| Shewanella sp. ANA-3 | 0.50 | Shewana3_0600 | | HflC protein (RefSeq) | 0.77 | Shewana3_2115 | | fumarate/nitrate reduction transcriptional regulator (RefSeq) | — | — |
| Shewanella loihica PV-4 | 0.49 | Shew_0569 | | HflC protein (RefSeq) | 0.76 | Shew_1993 | | fumarate/nitrate reduction transcriptional regulator (RefSeq) | — | — |
| Erwinia amylovora T8 | 0.49 | OLJFJH_02485 | | protease modulator HflC | 0.83 | OLJFJH_13925 | | transcriptional regulator FNR | low | > 58 |
| Rahnella sp. WP5 | 0.49 | EX31_RS08805 | | protease modulator HflC | 0.86 | EX31_RS07200 | | FNR family transcription factor | low | > 89 |
| Dickeya dianthicola 67-19 | 0.49 | HGI48_RS18530 | | protease modulator HflC | 0.86 | HGI48_RS10900 | | fumarate/nitrate reduction transcriptional regulator Fnr | low | > 71 |
| Dickeya dianthicola ME23 | 0.49 | DZA65_RS19665 | | protease modulator HflC | 0.86 | DZA65_RS11360 | | fumarate/nitrate reduction transcriptional regulator Fnr | low | > 75 |
| Shewanella amazonensis SB2B | 0.49 | Sama_3022 | | hflC protein (RefSeq) | 0.76 | Sama_1799 | | fumarate/nitrate reduction transcriptional regulator (RefSeq) | low | > 62 |
| Enterobacter asburiae PDN3 | 0.48 | EX28DRAFT_3372 | | HflC protein | 0.84 | EX28DRAFT_1540 | | cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases | low | > 76 |
| Dickeya dadantii 3937 | 0.48 | DDA3937_RS18595 | | protease modulator HflC | 0.86 | DDA3937_RS10950 | | fumarate/nitrate reduction transcriptional regulator Fnr | — | — |
| Kangiella aquimarina DSM 16071 | 0.40 | B158DRAFT_1955 | | HflC protein | 0.56 | B158DRAFT_1982 | | cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases | low | > 40 |
| Marinobacter adhaerens HP15 | 0.36 | HP15_2496 | | HflC | 0.41 | HP15_634 | | transcriptional regulator, Crp/Fnr family | low | > 73 |
| Dechlorosoma suillum PS | 0.35 | Dsui_3134 | | membrane protease subunit, stomatin/prohibitin | 0.40 | Dsui_1646 | | cAMP-binding protein | — | — |
| Rhodanobacter sp. FW510-T8 | 0.34 | OKGIIK_06645 | hflC | protease modulator HflC | 0.37 | OKGIIK_00820 | | CRP-like protein Clp | low | > 52 |
| Pseudomonas syringae pv. syringae B728a | 0.33 | Psyr_0575 | | protease FtsH subunit HflC | 0.54 | Psyr_3425 | | Cyclic nucleotide-binding:Bacterial regulatory protein, Crp | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.33 | Psyr_0575 | | protease FtsH subunit HflC | 0.54 | Psyr_3425 | | Cyclic nucleotide-binding:Bacterial regulatory protein, Crp | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.33 | Pf1N1B4_1409 | | HflC protein | 0.53 | Pf1N1B4_3867 | | Fumarate and nitrate reduction regulatory protein | — | — |
| Pseudomonas sp. SVBP6 | 0.33 | COO64_RS17915 | hflC | protease modulator HflC | 0.52 | COO64_RS18640 | fnrA | Crp/Fnr family transcriptional regulator FnrA | low | > 93 |
| Methylophilus sp. DMC18 | 0.33 | GFF1224 | | Modulator of FtsH protease HflC | 0.38 | GFF1089 | | Transcriptional activator protein Anr | low | > 43 |
| Pseudomonas fluorescens GW456-L13 | 0.33 | PfGW456L13_151 | | HflC protein | 0.54 | PfGW456L13_4071 | | Fumarate and nitrate reduction regulatory protein | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.33 | AO353_13160 | | membrane protease HflC | 0.53 | AO353_00660 | | transcriptional regulator | low | > 101 |
| Dyella japonica UNC79MFTsu3.2 | 0.33 | ABZR86_RS08350 | | protease modulator HflC | 0.25 | ABZR86_RS04345 | | cyclic nucleotide-binding domain-containing protein | low | > 74 |
| Pseudomonas fluorescens FW300-N2E2 | 0.33 | Pf6N2E2_3611 | | HflC protein | 0.53 | Pf6N2E2_2323 | | Fumarate and nitrate reduction regulatory protein | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.33 | AO356_08640 | | membrane protease HflC | 0.53 | AO356_02485 | | transcriptional regulator | low | > 104 |
| Pseudomonas aeruginosa PA14 | 0.32 | IKLFDK_28835 | | protease modulator HflC | 0.53 | IKLFDK_07375 | | transcriptional regulator Anr | — | — |
| Pseudomonas fluorescens SBW25 | 0.32 | PFLU_RS02585 | | protease modulator HflC | 0.53 | PFLU_RS22395 | | fumarate/nitrate reduction transcriptional regulator Fnr | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.32 | PFLU_RS02585 | | protease modulator HflC | 0.53 | PFLU_RS22395 | | fumarate/nitrate reduction transcriptional regulator Fnr | low | > 109 |
| Pseudomonas sp. DMC3 | 0.32 | GFF3223 | | Modulator of FtsH protease HflC | 0.54 | GFF711 | | Transcriptional activator protein Anr | — | — |
| Rhodanobacter sp000427505 FW510-R12 | 0.32 | LRK53_RS09540 | | protease modulator HflC | 0.35 | LRK53_RS14515 | | cyclic nucleotide-binding domain-containing protein | low | > 60 |
| Rhodanobacter denitrificans FW104-10B01 | 0.32 | LRK54_RS00615 | | protease modulator HflC | 0.35 | LRK54_RS05830 | | helix-turn-helix domain-containing protein | low | > 59 |
| Castellaniella sp019104865 MT123 | 0.31 | ABCV34_RS02665 | | protease modulator HflC | 0.34 | ABCV34_RS06835 | | helix-turn-helix domain-containing protein | — | — |
| Rhodanobacter denitrificans MT42 | 0.31 | LRK55_RS00385 | | protease modulator HflC | 0.35 | LRK55_RS05585 | | helix-turn-helix domain-containing protein | low | > 63 |
| Pseudomonas sp. BP01 | 0.31 | JOY50_RS17245 | hflC | protease modulator HflC | 0.52 | JOY50_RS00125 | fnrA | Crp/Fnr family transcriptional regulator FnrA | low | > 84 |
| Pseudomonas stutzeri RCH2 | 0.31 | Psest_0686 | | Membrane protease subunits, stomatin/prohibitin homologs | 0.53 | Psest_2538 | | cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases | — | — |
| Pseudomonas putida KT2440 | 0.31 | PP_4891 | | integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex | 0.52 | PP_4265 | | DNA-binding transcriptional dual regulator | low | > 96 |
| Pseudomonas sp. S08-1 | 0.31 | OH686_09455 | | HflC protein | 0.53 | OH686_02245 | | Fumarate and nitrate reduction regulatory protein | low | > 80 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.30 | Xcc-8004.3954.1 | | HflC protein | 0.22 | Xcc-8004.2952.1 | | transcriptional regulator, Crp/Fnr family | low | > 74 |
| Pseudomonas sp. RS175 | 0.30 | PFR28_05124 | | Modulator of FtsH protease HflC | 0.53 | PFR28_01079 | | Transcriptional activator protein Anr | — | — |
| Lysobacter sp. OAE881 | 0.30 | ABIE51_RS06555 | | protease modulator HflC | 0.37 | ABIE51_RS03805 | | fumarate/nitrate reduction transcriptional regulator Fnr | low | > 62 |
| Herbaspirillum seropedicae SmR1 | 0.30 | HSERO_RS14760 | | membrane protein | 0.41 | HSERO_RS16020 | | transcriptional regulator | — | — |
| Pseudomonas simiae WCS417 | 0.29 | PS417_02505 | | membane protease HflC | 0.53 | PS417_20785 | | transcriptional regulator | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.29 | RALBFv3_RS15315 | | protease modulator HflC | 0.38 | RALBFv3_RS15650 | | fumarate/nitrate reduction transcriptional regulator Fnr | — | — |
| Ralstonia solanacearum UW163 | 0.29 | UW163_RS12780 | | protease modulator HflC | 0.38 | UW163_RS13110 | | fumarate/nitrate reduction transcriptional regulator Fnr | — | — |
| Ralstonia solanacearum GMI1000 | 0.29 | RS_RS06125 | | protease modulator HflC | 0.38 | RS_RS06430 | | fumarate/nitrate reduction transcriptional regulator Fnr | — | — |
| Ralstonia solanacearum PSI07 | 0.29 | RPSI07_RS18060 | | protease modulator HflC | 0.38 | RPSI07_RS17705 | | fumarate/nitrate reduction transcriptional regulator Fnr | low | > 81 |
| Cupriavidus basilensis FW507-4G11 | 0.29 | RR42_RS13100 | | membrane protein | 0.40 | RR42_RS12875 | | transcriptional regulator | — | — |
| Ralstonia sp. UNC404CL21Col | 0.29 | ABZR87_RS10955 | | protease modulator HflC | 0.39 | ABZR87_RS11180 | | fumarate/nitrate reduction transcriptional regulator Fnr | low | > 80 |
| Magnetospirillum magneticum AMB-1 | 0.28 | AMB_RS17655 | | protease modulator HflC | 0.22 | AMB_RS22105 | | transcriptional regulator | — | — |
| Phaeobacter inhibens DSM 17395 | 0.28 | PGA1_c23700 | | protein HflC | 0.18 | PGA1_c30140 | | transcriptional activator protein FnrL | low | > 62 |
| Acidovorax sp. GW101-3H11 | 0.26 | Ac3H11_1802 | | HflC protein | 0.38 | Ac3H11_975 | | transcriptional regulator, Crp/Fnr family | — | — |
| Azospirillum sp. SherDot2 | 0.26 | MPMX19_01250 | | Modulator of FtsH protease HflC | 0.26 | MPMX19_00212 | | Nitrogen fixation regulation protein FixK | — | — |
| Variovorax sp. SCN45 | 0.25 | GFF1003 | | HflC protein | 0.22 | GFF6947 | | transcriptional regulator, Crp/Fnr family | low | > 127 |
| Desulfovibrio vulgaris Miyazaki F | 0.24 | DvMF_2675 | | HflC protein (RefSeq) | 0.14 | DvMF_0993 | | transcriptional regulator, Crp/Fnr family (RefSeq) | low | > 51 |
| Dinoroseobacter shibae DFL-12 | 0.24 | Dshi_2735 | | HflC protein (RefSeq) | 0.15 | Dshi_0660 | | transcriptional regulator, Crp/Fnr family (RefSeq) | low | > 64 |
| Rhodospirillum rubrum S1H | 0.24 | Rru_A2202 | | HflC (NCBI) | 0.22 | Rru_A3322 | | Transcriptional Regulator, Crp/Fnr family (NCBI) | — | — |
| Azospirillum brasilense Sp245 | 0.24 | AZOBR_RS06525 | | membrane protein | 0.26 | AZOBR_RS01145 | | Crp/Fnr family transcriptional regulator | 0.50 | 28 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.23 | DVU0683 | | hflC protein, putative (TIGR) | 0.14 | DVU2547 | | transcriptional regulator, putative (TIGR) | low | > 55 |
| Agrobacterium fabrum C58 | 0.22 | Atu2044 | | HFLC protein | 0.19 | Atu1602 | | transcriptional activator, Crp family | low | > 89 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.22 | GFF4855 | | HflC protein | 0.39 | GFF4142 | | transcriptional regulator, Crp/Fnr family | low | > 90 |
| Paraburkholderia graminis OAS925 | 0.21 | ABIE53_002734 | | membrane protease subunit HflC | 0.35 | ABIE53_004332 | | CRP/FNR family transcriptional regulator | low | > 113 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.21 | Echvi_2032 | | HflC protein | 0.17 | Echvi_2881 | | cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases | low | > 79 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.20 | H281DRAFT_00524 | | protease FtsH subunit HflC | 0.36 | H281DRAFT_01640 | | transcriptional regulator, Crp/Fnr family | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.19 | QEN71_RS06015 | | protease modulator HflC | 0.38 | QEN71_RS17975 | | helix-turn-helix domain-containing protein | low | > 153 |
| Burkholderia phytofirmans PsJN | 0.19 | BPHYT_RS12540 | | membrane protein | 0.38 | BPHYT_RS31300 | | Crp/Fnr family transcriptional regulator | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.14 | Ga0059261_1381 | | Membrane protease subunits, stomatin/prohibitin homologs | 0.16 | Ga0059261_1530 | | cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases | low | > 68 |
Not shown: 7 genomes with orthologs for CSW01_01850 only; 1 genomes with orthologs for CSW01_07190 only