Conservation of cofitness between CSW01_05265 and CSW01_06875 in Vibrio cholerae E7946 ATCC 55056

94 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_05265 methionine--tRNA ligase 1.0 CSW01_06875 7-cyano-7-deazaguanine synthase QueC 0.58 6
Rahnella sp. WP5 0.75 EX31_RS11555 methionine--tRNA ligase 0.70 EX31_RS22280 7-cyano-7-deazaguanine synthase QueC — —
Escherichia coli ECRC101 0.75 MCAODC_21155 metG methionine--tRNA ligase 0.70 MCAODC_27520 queC 7-cyano-7-deazaguanine synthase QueC low > 87
Escherichia coli ECRC98 0.75 JDDGAC_28115 metG methionine--tRNA ligase 0.70 JDDGAC_11950 queC 7-cyano-7-deazaguanine synthase QueC — —
Escherichia coli ECRC102 0.75 NIAGMN_21950 metG methionine--tRNA ligase 0.70 NIAGMN_06350 queC 7-cyano-7-deazaguanine synthase QueC — —
Escherichia coli ECRC100 0.75 OKFHMN_24005 metG methionine--tRNA ligase 0.70 OKFHMN_08295 queC 7-cyano-7-deazaguanine synthase QueC — —
Escherichia coli ECRC99 0.75 KEDOAH_04160 metG methionine--tRNA ligase 0.70 KEDOAH_19670 queC 7-cyano-7-deazaguanine synthase QueC — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.75 OHPLBJKB_01596 Methionine--tRNA ligase 0.71 OHPLBJKB_03229 7-cyano-7-deazaguanine synthase — —
Escherichia coli ECRC62 0.75 BNILDI_14255 metG methionine--tRNA ligase 0.71 BNILDI_22645 queC 7-cyano-7-deazaguanine synthase QueC — —
Escherichia coli ECOR27 0.75 NOLOHH_15305 metG methionine--tRNA ligase 0.71 NOLOHH_01230 queC 7-cyano-7-deazaguanine synthase QueC — —
Escherichia coli ECOR38 0.75 HEPCGN_02705 metG methionine--tRNA ligase 0.71 HEPCGN_06910 queC 7-cyano-7-deazaguanine synthase QueC low > 88
Enterobacter asburiae PDN3 0.75 EX28DRAFT_0439 methionyl-tRNA synthetase (EC 6.1.1.10) 0.69 EX28DRAFT_2526 queuosine biosynthesis protein QueC — —
Escherichia coli Nissle 1917 0.75 ECOLIN_RS12395 methionine--tRNA ligase 0.71 ECOLIN_RS02660 7-cyano-7-deazaguanine synthase QueC — —
Escherichia coli BW25113 0.75 b2114 metG methionyl-tRNA synthetase (NCBI) 0.71 b0444 ybaX predicted aluminum resistance protein (NCBI) low > 76
Enterobacter sp. TBS_079 0.75 MPMX20_03090 Methionine--tRNA ligase 0.69 MPMX20_01035 7-cyano-7-deazaguanine synthase low > 85
Escherichia coli BL21 0.75 ECD_02044 methionyl-tRNA synthetase 0.70 ECD_00396 7-cyano-7-deazaguanine (preQ0) synthase; queuosine biosynthesis low > 61
Klebsiella pneumoniae MKP103 0.74 KDGMDA_26475 methionine--tRNA ligase 0.69 KDGMDA_14645 7-cyano-7-deazaguanine synthase QueC low > 95
Escherichia fergusonii Becca 0.74 EFB2_01742 Methionine--tRNA ligase 0.71 EFB2_03613 7-cyano-7-deazaguanine synthase low > 86
Pectobacterium carotovorum WPP14 0.74 HER17_RS14660 methionine--tRNA ligase 0.69 HER17_RS15815 7-cyano-7-deazaguanine synthase QueC low > 75
Klebsiella michiganensis M5al 0.74 BWI76_RS19425 methionine--tRNA ligase 0.70 BWI76_RS06560 7-cyano-7-deazaguanine synthase QueC — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.74 GFF3824 Methionyl-tRNA synthetase (EC 6.1.1.10) 0.70 GFF4360 Queuosine Biosynthesis QueC ATPase — —
Dickeya dadantii 3937 0.73 DDA3937_RS06675 methionine--tRNA ligase 0.68 DDA3937_RS05670 7-cyano-7-deazaguanine synthase QueC — —
Erwinia tracheiphila SCR3 0.73 LU632_RS08570 metG methionine--tRNA ligase 0.69 LU632_RS18310 queC 7-cyano-7-deazaguanine synthase QueC low > 73
Erwinia tracheiphila HP pepo 2.2 0.73 IJEDHG_18680 metG methionine--tRNA ligase 0.69 IJEDHG_16475 queC 7-cyano-7-deazaguanine synthase QueC — —
Dickeya dianthicola 67-19 0.73 HGI48_RS06695 methionine--tRNA ligase 0.67 HGI48_RS05715 7-cyano-7-deazaguanine synthase QueC — —
Serratia liquefaciens MT49 0.73 IAI46_07960 methionine--tRNA ligase 0.70 IAI46_05045 7-cyano-7-deazaguanine synthase QueC low > 87
Erwinia amylovora T8 0.73 OLJFJH_11890 methionine--tRNA ligase 0.68 OLJFJH_17935 7-cyano-7-deazaguanine synthase QueC — —
Pantoea agglomerans CFBP13505 P0401 0.73 PagCFBP13505_RS00875 methionine--tRNA ligase 0.70 PagCFBP13505_RS10575 7-cyano-7-deazaguanine synthase QueC — —
Pantoea sp. MT58 0.72 IAI47_06775 methionine--tRNA ligase 0.72 IAI47_14620 7-cyano-7-deazaguanine synthase QueC — —
Dickeya dianthicola ME23 0.72 DZA65_RS07050 methionine--tRNA ligase 0.67 DZA65_RS06040 7-cyano-7-deazaguanine synthase QueC — —
Shewanella oneidensis MR-1 0.71 SO2619 metG methionyl-tRNA synthetase (NCBI ptt file) 0.72 SO2503 exsB exsB protein (NCBI ptt file) — —
Shewanella sp. ANA-3 0.71 Shewana3_1760 metG methionyl-tRNA synthetase (RefSeq) 0.72 Shewana3_2164 queuosine biosynthesis protein QueC (RefSeq) — —
Shewanella loihica PV-4 0.71 Shew_1573 metG methionyl-tRNA synthetase (RefSeq) 0.72 Shew_2062 exsB protein (RefSeq) — —
Shewanella amazonensis SB2B 0.71 Sama_2049 metG methionyl-tRNA synthetase (RefSeq) 0.76 Sama_1826 ExsB protein (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.67 MIT1002_02491 Methionine--tRNA ligase 0.29 MIT1002_01263 7-cyano-7-deazaguanine synthase — —
Pseudomonas sp. S08-1 0.65 OH686_03860 Methionyl-tRNA synthetase 0.30 OH686_19180 queuosine biosynthesis protein QueC — —
Pseudomonas putida KT2440 0.65 PP_1097 Methionine--tRNA ligase 0.28 PP_1226 pre-queuosine 0 synthase low > 96
Pseudomonas orientalis W4I3 0.65 QF045_RS08590 methionine--tRNA ligase 0.72 QF045_RS25625 7-cyano-7-deazaguanine synthase QueC — —
Pseudomonas fluorescens SBW25 0.65 PFLU_RS05750 methionine--tRNA ligase 0.27 PFLU_RS24040 7-cyano-7-deazaguanine synthase QueC low > 109
Pseudomonas simiae WCS417 0.65 PS417_05665 methionine--tRNA ligase 0.28 PS417_22400 7-cyano-7-deazaguanine synthase — —
Pseudomonas fluorescens SBW25-INTG 0.65 PFLU_RS05750 methionine--tRNA ligase 0.27 PFLU_RS24040 7-cyano-7-deazaguanine synthase QueC low > 109
Pseudomonas sp. BP01 0.65 JOY50_RS24020 metG methionine--tRNA ligase 0.28 JOY50_RS01770 queC 7-cyano-7-deazaguanine synthase QueC low > 84
Pseudomonas sp. SVBP6 0.65 COO64_RS16915 metG methionine--tRNA ligase 0.28 COO64_RS20145 queC 7-cyano-7-deazaguanine synthase QueC — —
Pseudomonas fluorescens FW300-N2E3 0.65 AO353_04055 methionine--tRNA ligase 0.70 AO353_22170 7-cyano-7-deazaguanine synthase low > 101
Pseudomonas fluorescens FW300-N1B4 0.65 Pf1N1B4_733 Methionyl-tRNA synthetase (EC 6.1.1.10) 0.70 Pf1N1B4_1527 Queuosine Biosynthesis QueC ATPase low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.64 Psyr_3886 methionyl-tRNA synthetase 0.28 Psyr_1419 preQ(0) biosynthesis protein QueC — —
Pseudomonas syringae pv. syringae B728a 0.64 Psyr_3886 methionyl-tRNA synthetase 0.28 Psyr_1419 preQ(0) biosynthesis protein QueC low > 86
Pseudomonas lactucae CFBP13502 0.64 GEMAOFIL_01320 Methionine--tRNA ligase 0.69 GEMAOFIL_04820 7-cyano-7-deazaguanine synthase low > 96
Pseudomonas aeruginosa MRSN321 0.64 DY961_RS15500 metG;go_function=nucleotide methionine--tRNA ligase 0.29 DY961_RS07550 queC;go_process=queuosine 7-cyano-7-deazaguanine synthase QueC — —
Pseudomonas aeruginosa PA14 0.64 IKLFDK_17870 methionine--tRNA ligase 0.29 IKLFDK_04420 7-cyano-7-deazaguanine synthase QueC — —
Pseudomonas aeruginosa PUPa3 0.64 DQ20_RS41560 metG;go_function=nucleotide methionine--tRNA ligase 0.29 DQ20_RS45240 queC;go_process=queuosine 7-cyano-7-deazaguanine synthase QueC — —
Pseudomonas sp. RS175 0.64 PFR28_03343 Methionine--tRNA ligase 0.29 PFR28_03403 7-cyano-7-deazaguanine synthase — —
Pseudomonas sp. DMC3 0.64 GFF5082 Methionine--tRNA ligase 0.28 GFF5175 7-cyano-7-deazaguanine synthase — —
Pseudomonas fluorescens GW456-L13 0.64 PfGW456L13_1759 Methionyl-tRNA synthetase (EC 6.1.1.10) 0.28 PfGW456L13_1862 Queuosine Biosynthesis QueC ATPase — —
Pseudomonas fluorescens FW300-N2C3 0.64 AO356_18375 methionine--tRNA ligase 0.30 AO356_18070 7-cyano-7-deazaguanine synthase — —
Marinobacter adhaerens HP15 0.63 HP15_1292 methionyl-tRNA synthetase 0.25 HP15_3814 ExsB protein — —
Pseudomonas segetis P6 0.63 MPMX49_01459 Methionine--tRNA ligase 0.29 MPMX49_01694 7-cyano-7-deazaguanine synthase — —
Pseudomonas stutzeri RCH2 0.63 Psest_3047 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain 0.30 Psest_1506 queuosine biosynthesis protein QueC low > 67
Kangiella aquimarina DSM 16071 0.62 B158DRAFT_2379 methionyl-tRNA synthetase (EC 6.1.1.10) 0.28 B158DRAFT_1146 preQ(0) biosynthesis protein QueC — —
Pseudomonas fluorescens FW300-N2E2 0.61 Pf6N2E2_5600 Methionyl-tRNA synthetase (EC 6.1.1.10) 0.71 Pf6N2E2_3734 Queuosine Biosynthesis QueC ATPase — —
Methylophilus sp. DMC18 0.59 GFF1079 Methionine--tRNA ligase 0.41 GFF1367 7-cyano-7-deazaguanine synthase low > 43
Dechlorosoma suillum PS 0.57 Dsui_1248 protein containing C-terminal region/beta chain of methionyl-tRNA synthetase 0.26 Dsui_0549 queuosine biosynthesis protein QueC low > 51
Acinetobacter radioresistens SK82 0.57 MPMX26_02526 Methionine--tRNA ligase 0.27 MPMX26_02175 7-cyano-7-deazaguanine synthase low > 36
Acinetobacter baumannii LAC-4 0.57 RR41_RS15370 methionine--tRNA ligase 0.29 RR41_RS04750 7-cyano-7-deazaguanine synthase QueC low > 55
Ralstonia solanacearum IBSBF1503 0.56 RALBFv3_RS04405 methionine--tRNA ligase 0.28 RALBFv3_RS12940 7-cyano-7-deazaguanine synthase QueC — —
Ralstonia solanacearum UW163 0.56 UW163_RS09265 methionine--tRNA ligase 0.28 UW163_RS00625 7-cyano-7-deazaguanine synthase QueC — —
Ralstonia sp. UNC404CL21Col 0.56 ABZR87_RS16260 methionine--tRNA ligase 0.27 ABZR87_RS09000 7-cyano-7-deazaguanine synthase QueC — —
Ralstonia solanacearum GMI1000 0.56 RS_RS11955 methionine--tRNA ligase 0.27 RS_RS03715 7-cyano-7-deazaguanine synthase — —
Ralstonia solanacearum PSI07 0.55 RPSI07_RS12965 methionine--tRNA ligase 0.27 RPSI07_RS20285 7-cyano-7-deazaguanine synthase QueC — —
Xanthomonas campestris pv. campestris strain 8004 0.55 Xcc-8004.3595.1 Methionyl-tRNA synthetase (EC 6.1.1.10) 0.28 Xcc-8004.1450.1 Queuosine Biosynthesis QueC ATPase low > 74
Burkholderia phytofirmans PsJN 0.54 BPHYT_RS04955 methionyl-tRNA synthetase 0.45 BPHYT_RS01500 7-cyano-7-deazaguanine synthase low > 109
Paraburkholderia bryophila 376MFSha3.1 0.54 H281DRAFT_00155 methionyl-tRNA synthetase 0.44 H281DRAFT_02232 preQ(0) biosynthesis protein QueC — —
Cupriavidus basilensis FW507-4G11 0.54 RR42_RS16020 methionyl-tRNA synthetase 0.27 RR42_RS15445 7-cyano-7-deazaguanine synthase — —
Paraburkholderia sabiae LMG 24235 0.54 QEN71_RS25025 methionine--tRNA ligase 0.43 QEN71_RS00200 7-cyano-7-deazaguanine synthase QueC — —
Paraburkholderia graminis OAS925 0.54 ABIE53_001265 methionyl-tRNA synthetase 0.44 ABIE53_000396 7-cyano-7-deazaguanine synthase — —
Lysobacter sp. OAE881 0.54 ABIE51_RS08085 methionine--tRNA ligase 0.28 ABIE51_RS05105 7-cyano-7-deazaguanine synthase QueC — —
Rhodanobacter sp. FW510-T8 0.53 OKGIIK_04685 metG methionine--tRNA ligase 0.26 OKGIIK_01895 queC 7-cyano-7-deazaguanine synthase QueC — —
Rhodanobacter denitrificans FW104-10B01 0.53 LRK54_RS01835 methionine--tRNA ligase 0.26 LRK54_RS04855 7-cyano-7-deazaguanine synthase QueC — —
Rhodanobacter denitrificans MT42 0.53 LRK55_RS01625 methionine--tRNA ligase 0.26 LRK55_RS04635 7-cyano-7-deazaguanine synthase QueC — —
Dyella japonica UNC79MFTsu3.2 0.53 ABZR86_RS08170 methionine--tRNA ligase 0.27 ABZR86_RS10785 7-cyano-7-deazaguanine synthase QueC low > 74
Rhodanobacter sp000427505 FW510-R12 0.52 LRK53_RS08210 methionine--tRNA ligase 0.26 LRK53_RS05175 7-cyano-7-deazaguanine synthase QueC — —
Acidovorax sp. GW101-3H11 0.51 Ac3H11_3818 Methionyl-tRNA synthetase (EC 6.1.1.10) 0.41 Ac3H11_4838 Queuosine Biosynthesis QueC ATPase low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.51 GFF1208 Methionyl-tRNA synthetase (EC 6.1.1.10) 0.40 GFF1402 Queuosine Biosynthesis QueC ATPase — —
Variovorax sp. SCN45 0.51 GFF2588 Methionyl-tRNA synthetase (EC 6.1.1.10) 0.45 GFF5214 7-cyano-7-deazaguanine synthase (EC 6.3.4.20) — —
Herbaspirillum seropedicae SmR1 0.51 HSERO_RS15470 methionyl-tRNA synthetase 0.44 HSERO_RS20880 7-cyano-7-deazaguanine synthase — —
Castellaniella sp019104865 MT123 0.47 ABCV34_RS08930 methionine--tRNA ligase 0.41 ABCV34_RS10950 7-cyano-7-deazaguanine synthase QueC — —
Bacteroides thetaiotaomicron VPI-5482 0.29 BT2933 Methionyl-tRNA synthetase (NCBI ptt file) 0.53 BT1566 putative aluminum resistance protein (NCBI ptt file) — —
Parabacteroides merdae CL09T00C40 0.29 HMPREF1078_RS07310 methionine--tRNA ligase 0.49 HMPREF1078_RS14060 7-cyano-7-deazaguanine synthase QueC low > 61
Bacteroides ovatus ATCC 8483 0.29 BACOVA_02185 methionine--tRNA ligase 0.53 BACOVA_04309 protein ExsB low > 96
Phocaeicola vulgatus CL09T03C04 0.28 HMPREF1058_RS09700 methionine--tRNA ligase 0.54 HMPREF1058_RS15270 7-cyano-7-deazaguanine synthase QueC low > 67
Bacteroides stercoris CC31F 0.28 HMPREF1181_RS01280 methionine--tRNA ligase 0.55 HMPREF1181_RS11150 7-cyano-7-deazaguanine synthase QueC — —
Methanococcus maripaludis JJ 0.26 MMJJ_RS03635 methionine--tRNA ligase 0.19 MMJJ_RS04135 7-cyano-7-deazaguanine synthase QueC low > 28
Methanococcus maripaludis S2 0.26 MMP_RS01740 methionine--tRNA ligase 0.20 MMP_RS01240 7-cyano-7-deazaguanine synthase QueC — —
Desulfovibrio vulgaris Hildenborough JW710 0.16 DVU2055 metG methionyl-tRNA synthetase (TIGR) 0.42 DVU2659 exsB protein (TIGR) low > 55
Desulfovibrio vulgaris Miyazaki F 0.16 DvMF_0759 methionyl-tRNA synthetase (RefSeq) 0.41 DvMF_1125 exsB protein (RefSeq) — —

Not shown: 7 genomes with orthologs for CSW01_05265 only; 18 genomes with orthologs for CSW01_06875 only