Conservation of cofitness between CSW01_13680 and CSW01_04845 in Vibrio cholerae E7946 ATCC 55056

95 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_13680 DNA helicase RecG 1.0 CSW01_04845 D-alanyl-D-alanine carboxypeptidase 0.67 18
Pantoea agglomerans CFBP13505 P0401 0.70 PagCFBP13505_RS18845 ATP-dependent DNA helicase RecG 0.56 PagCFBP13505_RS03265 D-alanyl-D-alanine carboxypeptidase DacA low > 74
Pantoea sp. MT58 0.70 IAI47_00500 ATP-dependent DNA helicase RecG 0.57 IAI47_14040 D-alanyl-D-alanine carboxypeptidase DacA low > 76
Serratia liquefaciens MT49 0.69 IAI46_24905 ATP-dependent DNA helicase RecG 0.56 IAI46_05915 D-alanyl-D-alanine carboxypeptidase DacA low > 86
Klebsiella pneumoniae MKP103 0.69 KDGMDA_08135 ATP-dependent DNA helicase RecG 0.55 KDGMDA_16380 D-alanyl-D-alanine carboxypeptidase DacA 0.48 36
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.69 GFF355 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.55 GFF4545 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) low > 78
Erwinia amylovora T8 0.69 OLJFJH_05550 ATP-dependent DNA helicase RecG 0.55 OLJFJH_17245 D-alanyl-D-alanine carboxypeptidase DacA 0.65 5
Dickeya dadantii 3937 0.69 DDA3937_RS00170 ATP-dependent DNA helicase RecG 0.57 DDA3937_RS06155 D-alanyl-D-alanine carboxypeptidase DacA low > 74
Escherichia coli ECRC98 0.69 JDDGAC_19170 recG ATP-dependent DNA helicase RecG 0.55 JDDGAC_11025 dacA D-alanyl-D-alanine carboxypeptidase DacA low > 87
Escherichia coli ECRC100 0.69 OKFHMN_15545 recG ATP-dependent DNA helicase RecG 0.55 OKFHMN_07380 dacA D-alanyl-D-alanine carboxypeptidase DacA low > 79
Escherichia coli ECRC101 0.69 MCAODC_06055 recG ATP-dependent DNA helicase RecG 0.55 MCAODC_26595 dacA D-alanyl-D-alanine carboxypeptidase DacA low > 88
Escherichia coli ECRC102 0.69 NIAGMN_13305 recG ATP-dependent DNA helicase RecG 0.55 NIAGMN_05435 dacA D-alanyl-D-alanine carboxypeptidase DacA low > 80
Escherichia coli ECRC99 0.69 KEDOAH_12600 recG ATP-dependent DNA helicase RecG 0.55 KEDOAH_20590 dacA D-alanyl-D-alanine carboxypeptidase DacA — —
Escherichia coli ECOR38 0.68 HEPCGN_14365 recG ATP-dependent DNA helicase RecG 0.55 HEPCGN_00895 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.59 51
Escherichia coli ECOR27 0.68 NOLOHH_07425 recG ATP-dependent DNA helicase RecG 0.55 NOLOHH_23755 dacA D-alanyl-D-alanine carboxypeptidase DacA low > 76
Escherichia fergusonii Becca 0.68 EFB2_00136 ATP-dependent DNA helicase RecG 0.54 EFB2_03460 D-alanyl-D-alanine carboxypeptidase DacA low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.68 OHPLBJKB_00049 ATP-dependent DNA helicase RecG 0.55 OHPLBJKB_03074 D-alanyl-D-alanine carboxypeptidase DacA 0.65 15
Escherichia coli ECRC62 0.68 BNILDI_04090 recG ATP-dependent DNA helicase RecG 0.55 BNILDI_21765 dacA D-alanyl-D-alanine carboxypeptidase DacA low > 75
Escherichia coli BW25113 0.68 b3652 recG ATP-dependent DNA helicase (NCBI) 0.55 b0632 dacA D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) (NCBI) low > 76
Escherichia coli BL21 0.68 ECD_03509 ATP-dependent DNA helicase 0.55 ECD_00601 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) low > 61
Escherichia coli Nissle 1917 0.68 ECOLIN_RS20800 ATP-dependent DNA helicase RecG 0.55 ECOLIN_RS03445 D-alanyl-D-alanine carboxypeptidase DacA — —
Klebsiella michiganensis M5al 0.68 BWI76_RS27440 DNA helicase RecG 0.55 BWI76_RS08020 serine-type D-Ala-D-Ala carboxypeptidase low > 92
Enterobacter sp. TBS_079 0.68 MPMX20_00084 ATP-dependent DNA helicase RecG 0.55 MPMX20_01291 D-alanyl-D-alanine carboxypeptidase DacA low > 85
Dickeya dianthicola ME23 0.68 DZA65_RS22160 ATP-dependent DNA helicase RecG 0.56 DZA65_RS06545 D-alanyl-D-alanine carboxypeptidase DacA low > 75
Pectobacterium carotovorum WPP14 0.68 HER17_RS21395 ATP-dependent DNA helicase RecG 0.58 HER17_RS15260 D-alanyl-D-alanine carboxypeptidase DacA low > 75
Dickeya dianthicola 67-19 0.68 HGI48_RS21190 ATP-dependent DNA helicase RecG 0.57 HGI48_RS06200 D-alanyl-D-alanine carboxypeptidase DacA low > 71
Enterobacter asburiae PDN3 0.67 EX28DRAFT_3901 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.55 EX28DRAFT_2331 D-alanyl-D-alanine carboxypeptidase 0.89 1
Erwinia tracheiphila HP pepo 2.2 0.67 IJEDHG_08345 recG ATP-dependent DNA helicase RecG 0.56 IJEDHG_02480 D-alanyl-D-alanine carboxypeptidase DacC low > 61
Erwinia tracheiphila SCR3 0.67 LU632_RS22190 recG ATP-dependent DNA helicase RecG 0.56 LU632_RS16390 dacA D-alanyl-D-alanine carboxypeptidase DacA low > 74
Rahnella sp. WP5 0.67 EX31_RS15820 ATP-dependent DNA helicase RecG 0.57 EX31_RS23105 D-alanyl-D-alanine carboxypeptidase DacA low > 89
Shewanella amazonensis SB2B 0.65 Sama_3375 ATP-dependent DNA helicase RecG (RefSeq) 0.69 Sama_2592 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) — —
Shewanella loihica PV-4 0.65 Shew_3507 ATP-dependent DNA helicase RecG (RefSeq) 0.68 Shew_2939 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) low > 60
Shewanella sp. ANA-3 0.65 Shewana3_0348 ATP-dependent DNA helicase RecG (RefSeq) 0.69 Shewana3_0991 penicillin-binding protein 6 (RefSeq) low > 73
Alteromonas macleodii MIT1002 0.64 MIT1002_00111 ATP-dependent DNA helicase RecG 0.62 MIT1002_01848 D-alanyl-D-alanine carboxypeptidase DacC precursor — —
Shewanella oneidensis MR-1 0.64 SO4364 recG ATP-dependent DNA helicase RecG (NCBI ptt file) 0.69 SO1164 dacA-1 D-alanyl-D-alanine carboxypeptidase (NCBI ptt file) — —
Pseudomonas segetis P6 0.57 MPMX49_00040 ATP-dependent DNA helicase RecG 0.46 MPMX49_01056 D-alanyl-D-alanine carboxypeptidase DacC low > 75
Pseudomonas stutzeri RCH2 0.57 Psest_4192 ATP-dependent DNA helicase RecG 0.46 Psest_0516 D-alanyl-D-alanine carboxypeptidase — —
Pseudomonas sp. BP01 0.56 JOY50_RS08945 recG ATP-dependent DNA helicase RecG 0.45 JOY50_RS17720 D-alanyl-D-alanine carboxypeptidase family protein low > 84
Pseudomonas sp. S08-1 0.56 OH686_13505 ATP-dependent DNA helicase RecG 0.45 OH686_09300 D-alanyl-D-alanine carboxypeptidase low > 80
Pseudomonas putida KT2440 0.56 PP_5310 junction-specific ATP-dependent DNA helicase 0.45 PP_4803 D-alanyl-D-alanine carboxypeptidase low > 96
Pseudomonas aeruginosa PA14 0.55 IKLFDK_26730 ATP-dependent DNA helicase RecG 0.45 IKLFDK_20625 serine-type D-Ala-D-Ala carboxypeptidase low > 100
Pseudomonas fluorescens FW300-N1B4 0.55 Pf1N1B4_2105 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.46 Pf1N1B4_2696 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Pseudomonas fluorescens GW456-L13 0.55 PfGW456L13_772 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.46 PfGW456L13_1364 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Pseudomonas sp. RS175 0.55 PFR28_04435 ATP-dependent DNA helicase RecG 0.47 PFR28_03864 D-alanyl-D-alanine carboxypeptidase DacC 0.28 25
Marinobacter adhaerens HP15 0.55 HP15_309 DNA helicase, ATP-dependent, RecG 0.45 HP15_608 serine-type D-Ala-D-Ala carboxypeptidase — —
Pseudomonas sp. DMC3 0.55 GFF427 ATP-dependent DNA helicase RecG 0.46 GFF3884 D-alanyl-D-alanine carboxypeptidase DacC low > 89
Pseudomonas fluorescens SBW25-INTG 0.55 PFLU_RS29550 ATP-dependent DNA helicase RecG 0.46 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase 0.37 29
Pseudomonas fluorescens FW300-N2E2 0.55 Pf6N2E2_4352 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.46 Pf6N2E2_5001 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.33 36
Pseudomonas lactucae CFBP13502 0.55 GEMAOFIL_00042 ATP-dependent DNA helicase RecG 0.46 GEMAOFIL_05094 D-alanyl-D-alanine carboxypeptidase DacC low > 93
Pseudomonas simiae WCS417 0.55 PS417_27870 ATP-dependent DNA helicase RecG 0.46 PS417_24705 D-alanyl-D-alanine carboxypeptidase 0.32 79
Pseudomonas fluorescens SBW25 0.55 PFLU_RS29550 ATP-dependent DNA helicase RecG 0.46 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase low > 109
Pseudomonas fluorescens FW300-N2C3 0.55 AO356_12380 ATP-dependent DNA helicase RecG 0.46 AO356_15330 D-alanyl-D-alanine carboxypeptidase low > 104
Pseudomonas fluorescens FW300-N2E3 0.55 AO353_09320 ATP-dependent DNA helicase RecG 0.46 AO353_06455 D-alanyl-D-alanine carboxypeptidase 0.34 68
Pseudomonas syringae pv. syringae B728a 0.55 Psyr_0201 ATP-dependent DNA helicase RecG 0.47 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.55 Psyr_0201 ATP-dependent DNA helicase RecG 0.47 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 low > 86
Pseudomonas sp. SVBP6 0.55 COO64_RS01595 recG ATP-dependent DNA helicase RecG 0.46 COO64_RS15590 D-alanyl-D-alanine carboxypeptidase family protein low > 93
Lysobacter sp. OAE881 0.53 ABIE51_RS17230 ATP-dependent DNA helicase RecG 0.40 ABIE51_RS03165 D-alanyl-D-alanine carboxypeptidase family protein low > 62
Acinetobacter radioresistens SK82 0.52 MPMX26_02732 ATP-dependent DNA helicase RecG 0.39 MPMX26_01051 D-alanyl-D-alanine carboxypeptidase DacA low > 36
Rhodanobacter sp000427505 FW510-R12 0.52 LRK53_RS16735 ATP-dependent DNA helicase RecG 0.41 LRK53_RS17780 D-alanyl-D-alanine carboxypeptidase — —
Acinetobacter baumannii LAC-4 0.52 RR41_RS02075 ATP-dependent DNA helicase RecG 0.40 RR41_RS05330 D-alanyl-D-alanine carboxypeptidase PBP5/6 — —
Xanthomonas campestris pv. campestris strain 8004 0.51 Xcc-8004.1204.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.42 Xcc-8004.907.1 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) low > 74
Rhodanobacter denitrificans MT42 0.51 LRK55_RS11530 ATP-dependent DNA helicase RecG 0.41 LRK55_RS06235 D-alanyl-D-alanine carboxypeptidase family protein — —
Dyella japonica UNC79MFTsu3.2 0.51 ABZR86_RS11840 ATP-dependent DNA helicase RecG 0.41 ABZR86_RS17490 D-alanyl-D-alanine carboxypeptidase family protein — —
Rhodanobacter denitrificans FW104-10B01 0.50 LRK54_RS11805 ATP-dependent DNA helicase RecG 0.41 LRK54_RS06490 D-alanyl-D-alanine carboxypeptidase low > 59
Rhodanobacter sp. FW510-T8 0.50 OKGIIK_12090 recG ATP-dependent DNA helicase RecG 0.42 OKGIIK_00090 serine-type D-Ala-D-Ala carboxypeptidase low > 53
Kangiella aquimarina DSM 16071 0.49 B158DRAFT_0566 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.50 B158DRAFT_0079 D-alanyl-D-alanine carboxypeptidase — —
Cupriavidus basilensis FW507-4G11 0.45 RR42_RS17390 ATP-dependent DNA helicase RecG 0.39 RR42_RS01680 cytochrome C550 low > 128
Methylophilus sp. DMC18 0.45 GFF2125 ATP-dependent DNA helicase RecG 0.39 GFF2179 D-alanyl-D-alanine carboxypeptidase DacC low > 43
Ralstonia solanacearum IBSBF1503 0.45 RALBFv3_RS05675 DNA helicase RecG 0.34 RALBFv3_RS10770 D-alanyl-D-alanine carboxypeptidase low > 76
Ralstonia solanacearum UW163 0.45 UW163_RS07950 DNA helicase RecG 0.34 UW163_RS02810 D-alanyl-D-alanine carboxypeptidase — —
Ralstonia solanacearum PSI07 0.45 RPSI07_RS11625 DNA helicase RecG 0.36 RPSI07_RS22545 D-alanyl-D-alanine carboxypeptidase low > 81
Ralstonia sp. UNC404CL21Col 0.45 ABZR87_RS01270 ATP-dependent DNA helicase RecG 0.36 ABZR87_RS06610 D-alanyl-D-alanine carboxypeptidase family protein low > 80
Ralstonia solanacearum GMI1000 0.45 RS_RS13565 DNA helicase RecG 0.35 RS_RS01610 D-alanyl-D-alanine carboxypeptidase — —
Paraburkholderia graminis OAS925 0.44 ABIE53_000833 ATP-dependent DNA helicase RecG 0.36 ABIE53_000626 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) low > 113
Burkholderia phytofirmans PsJN 0.44 BPHYT_RS03400 ATP-dependent DNA helicase RecG 0.37 BPHYT_RS02415 cytochrome C550 low > 109
Herbaspirillum seropedicae SmR1 0.44 HSERO_RS06165 ATP-dependent DNA helicase RecG 0.35 HSERO_RS21530 cytochrome C550 low > 78
Paraburkholderia bryophila 376MFSha3.1 0.44 H281DRAFT_04672 ATP-dependent DNA helicase RecG 0.36 H281DRAFT_02054 penicillin-binding protein 6. Serine peptidase. MEROPS family S11 low > 103
Paraburkholderia sabiae LMG 24235 0.44 QEN71_RS26630 ATP-dependent DNA helicase RecG 0.36 QEN71_RS01300 D-alanyl-D-alanine carboxypeptidase family protein — —
Acidovorax sp. GW101-3H11 0.44 Ac3H11_781 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.32 Ac3H11_2142 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Dechlorosoma suillum PS 0.42 Dsui_0311 ATP-dependent DNA helicase RecG 0.37 Dsui_0899 D-alanyl-D-alanine carboxypeptidase low > 51
Castellaniella sp019104865 MT123 0.41 ABCV34_RS03570 ATP-dependent DNA helicase RecG 0.34 ABCV34_RS13340 D-alanyl-D-alanine carboxypeptidase family protein low > 48
Variovorax sp. OAS795 0.41 ABID97_RS01575 ATP-dependent DNA helicase RecG 0.32 ABID97_RS00695 D-alanyl-D-alanine carboxypeptidase family protein low > 91
Hydrogenophaga sp. GW460-11-11-14-LB1 0.40 GFF2802 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.33 GFF1806 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.79 4
Sinorhizobium meliloti 1021 0.35 SMc00228 ATP-dependent DNA helicase RecG 0.22 SMc01188 penicillin-binding precursor (D-alanyl-D-alanine carboxypeptidase fraction A) transmembrane protein — —
Azospirillum sp. SherDot2 0.34 MPMX19_00951 ATP-dependent DNA helicase RecG 0.35 MPMX19_01465 D-alanyl-D-alanine carboxypeptidase DacC — —
Magnetospirillum magneticum AMB-1 0.34 AMB_RS12400 ATP-dependent DNA helicase RecG 0.30 AMB_RS12315 D-alanyl-D-alanine carboxypeptidase — —
Azospirillum brasilense Sp245 0.33 AZOBR_RS09850 ATP-dependent DNA helicase RecG 0.33 AZOBR_RS08775 D-alanyl-D-alanine carboxypeptidase — —
Sphingobium sp. HT1-2 0.33 GFF3604 ATP-dependent DNA helicase RecG (EC 3.6.4.12) 0.29 GFF5300 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Agrobacterium fabrum C58 0.33 Atu1780 ATP-dependent DNA helicase 0.21 Atu1499 penicillin binding protein low > 89
Phaeobacter inhibens DSM 17395 0.32 PGA1_c14380 ATP-dependent DNA helicase RecG 0.26 PGA1_c08020 D-alanyl-D-alanine carboxypeptidase DacC — —
Dinoroseobacter shibae DFL-12 0.32 Dshi_1510 DEAD/DEAH box helicase domain protein (RefSeq) 0.25 Dshi_0923 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) — —
Sphingomonas koreensis DSMZ 15582 0.31 Ga0059261_0958 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.28 Ga0059261_0122 D-alanyl-D-alanine carboxypeptidase — —
Bosea sp. OAE506 0.31 ABIE41_RS15815 ATP-dependent DNA helicase RecG 0.30 ABIE41_RS15965 D-alanyl-D-alanine carboxypeptidase family protein — —
Rhodospirillum rubrum S1H 0.29 Rru_A1728 ATP-dependent DNA helicase RecG (NCBI) 0.38 Rru_A1704 Serine-type D-Ala-D-Ala carboxypeptidase (NCBI) — —
Xanthobacter sp. DMC5 0.29 GFF630 ATP-dependent DNA helicase RecG 0.26 GFF689 D-alanyl-D-alanine carboxypeptidase DacC — —
Rhodopseudomonas palustris CGA009 0.29 TX73_013795 ATP-dependent DNA helicase RecG 0.26 TX73_014370 D-alanyl-D-alanine carboxypeptidase low > 86

Not shown: 18 genomes with orthologs for CSW01_13680 only; 0 genomes with orthologs for CSW01_04845 only