Conservation of cofitness between CSW01_12250 and CSW01_04845 in Vibrio cholerae E7946 ATCC 55056

97 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_12250 site-specific tyrosine recombinase XerD 1.0 CSW01_04845 D-alanyl-D-alanine carboxypeptidase 0.73 14
Erwinia tracheiphila HP pepo 2.2 0.71 IJEDHG_03195 xerD site-specific tyrosine recombinase XerD 0.56 IJEDHG_02480 D-alanyl-D-alanine carboxypeptidase DacC — —
Pectobacterium carotovorum WPP14 0.71 HER17_RS17890 site-specific tyrosine recombinase XerD 0.58 HER17_RS15260 D-alanyl-D-alanine carboxypeptidase DacA low > 75
Erwinia tracheiphila SCR3 0.70 LU632_RS05975 xerD site-specific tyrosine recombinase XerD 0.56 LU632_RS16390 dacA D-alanyl-D-alanine carboxypeptidase DacA — —
Erwinia amylovora T8 0.70 OLJFJH_08835 site-specific tyrosine recombinase XerD 0.55 OLJFJH_17245 D-alanyl-D-alanine carboxypeptidase DacA low > 58
Rahnella sp. WP5 0.70 EX31_RS13480 site-specific tyrosine recombinase XerD 0.57 EX31_RS23105 D-alanyl-D-alanine carboxypeptidase DacA low > 89
Serratia liquefaciens MT49 0.69 IAI46_20730 site-specific tyrosine recombinase XerD 0.56 IAI46_05915 D-alanyl-D-alanine carboxypeptidase DacA low > 87
Pantoea sp. MT58 0.69 IAI47_03820 site-specific tyrosine recombinase XerD 0.57 IAI47_14040 D-alanyl-D-alanine carboxypeptidase DacA low > 76
Pantoea agglomerans CFBP13505 P0401 0.69 PagCFBP13505_RS15880 site-specific tyrosine recombinase XerD 0.56 PagCFBP13505_RS03265 D-alanyl-D-alanine carboxypeptidase DacA low > 74
Dickeya dadantii 3937 0.68 DDA3937_RS03300 site-specific tyrosine recombinase XerD 0.57 DDA3937_RS06155 D-alanyl-D-alanine carboxypeptidase DacA low > 74
Enterobacter sp. TBS_079 0.68 MPMX20_03753 Tyrosine recombinase XerD 0.55 MPMX20_01291 D-alanyl-D-alanine carboxypeptidase DacA low > 85
Enterobacter asburiae PDN3 0.68 EX28DRAFT_2945 tyrosine recombinase XerD 0.55 EX28DRAFT_2331 D-alanyl-D-alanine carboxypeptidase low > 76
Klebsiella pneumoniae MKP103 0.68 KDGMDA_04300 site-specific tyrosine recombinase XerD 0.55 KDGMDA_16380 D-alanyl-D-alanine carboxypeptidase DacA 0.47 19
Dickeya dianthicola ME23 0.68 DZA65_RS03485 site-specific tyrosine recombinase XerD 0.56 DZA65_RS06545 D-alanyl-D-alanine carboxypeptidase DacA — —
Dickeya dianthicola 67-19 0.68 HGI48_RS03440 site-specific tyrosine recombinase XerD 0.57 HGI48_RS06200 D-alanyl-D-alanine carboxypeptidase DacA low > 71
Klebsiella michiganensis M5al 0.68 BWI76_RS23815 site-specific tyrosine recombinase XerD 0.55 BWI76_RS08020 serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia coli ECOR38 0.68 HEPCGN_18860 xerD site-specific tyrosine recombinase XerD 0.55 HEPCGN_00895 dacA D-alanyl-D-alanine carboxypeptidase DacA low > 88
Escherichia coli BW25113 0.67 b2894 xerD site-specific tyrosine recombinase XerD (NCBI) 0.55 b0632 dacA D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) (NCBI) low > 76
Escherichia fergusonii Becca 0.67 EFB2_01007 Tyrosine recombinase XerD 0.54 EFB2_03460 D-alanyl-D-alanine carboxypeptidase DacA low > 86
Escherichia coli Nissle 1917 0.67 ECOLIN_RS16125 site-specific tyrosine recombinase XerD 0.55 ECOLIN_RS03445 D-alanyl-D-alanine carboxypeptidase DacA — —
Escherichia coli ECOR27 0.67 NOLOHH_11495 xerD site-specific tyrosine recombinase XerD 0.55 NOLOHH_23755 dacA D-alanyl-D-alanine carboxypeptidase DacA low > 76
Escherichia coli ECRC99 0.67 KEDOAH_08570 xerD site-specific tyrosine recombinase XerD 0.55 KEDOAH_20590 dacA D-alanyl-D-alanine carboxypeptidase DacA — —
Escherichia coli ECRC98 0.67 JDDGAC_23210 xerD site-specific tyrosine recombinase XerD 0.55 JDDGAC_11025 dacA D-alanyl-D-alanine carboxypeptidase DacA — —
Escherichia coli ECRC62 0.67 BNILDI_10025 xerD site-specific tyrosine recombinase XerD 0.55 BNILDI_21765 dacA D-alanyl-D-alanine carboxypeptidase DacA low > 75
Escherichia coli BL21 0.67 ECD_02726 site-specific tyrosine recombinase 0.55 ECD_00601 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) low > 61
Escherichia coli ECRC100 0.67 OKFHMN_19570 xerD site-specific tyrosine recombinase XerD 0.55 OKFHMN_07380 dacA D-alanyl-D-alanine carboxypeptidase DacA — —
Escherichia coli ECRC101 0.67 MCAODC_10090 xerD site-specific tyrosine recombinase XerD 0.55 MCAODC_26595 dacA D-alanyl-D-alanine carboxypeptidase DacA — —
Escherichia coli ECRC102 0.67 NIAGMN_17335 xerD site-specific tyrosine recombinase XerD 0.55 NIAGMN_05435 dacA D-alanyl-D-alanine carboxypeptidase DacA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_00821 Tyrosine recombinase XerD 0.55 OHPLBJKB_03074 D-alanyl-D-alanine carboxypeptidase DacA low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.67 GFF2991 Tyrosine recombinase XerD 0.55 GFF4545 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) low > 78
Pseudomonas fluorescens FW300-N2E3 0.58 AO353_04365 recombinase XerD 0.46 AO353_06455 D-alanyl-D-alanine carboxypeptidase low > 101
Pseudomonas sp. SVBP6 0.58 COO64_RS04910 xerD site-specific tyrosine recombinase XerD 0.46 COO64_RS15590 D-alanyl-D-alanine carboxypeptidase family protein low > 93
Pseudomonas fluorescens GW456-L13 0.58 PfGW456L13_1721 Tyrosine recombinase XerD 0.46 PfGW456L13_1364 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Pseudomonas fluorescens FW300-N2C3 0.58 AO356_06385 recombinase XerD 0.46 AO356_15330 D-alanyl-D-alanine carboxypeptidase low > 104
Pseudomonas fluorescens FW300-N2E2 0.58 Pf6N2E2_3145 Tyrosine recombinase XerD 0.46 Pf6N2E2_5001 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Pseudomonas sp. DMC3 0.58 GFF1987 Tyrosine recombinase XerD 0.46 GFF3884 D-alanyl-D-alanine carboxypeptidase DacC low > 89
Pseudomonas sp. BP01 0.58 JOY50_RS11700 xerD site-specific tyrosine recombinase XerD 0.45 JOY50_RS17720 D-alanyl-D-alanine carboxypeptidase family protein low > 84
Pseudomonas sp. RS175 0.58 PFR28_00331 Tyrosine recombinase XerD 0.47 PFR28_03864 D-alanyl-D-alanine carboxypeptidase DacC low > 88
Pseudomonas putida KT2440 0.58 PP_1468 Tyrosine recombinase XerD 0.45 PP_4803 D-alanyl-D-alanine carboxypeptidase low > 96
Pseudomonas fluorescens FW300-N1B4 0.57 Pf1N1B4_3011 Tyrosine recombinase XerD 0.46 Pf1N1B4_2696 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Pseudomonas simiae WCS417 0.57 PS417_22895 tyrosine recombinase XerD 0.46 PS417_24705 D-alanyl-D-alanine carboxypeptidase low > 88
Pseudomonas lactucae CFBP13502 0.57 GEMAOFIL_04729 Tyrosine recombinase XerD 0.46 GEMAOFIL_05094 D-alanyl-D-alanine carboxypeptidase DacC low > 96
Pseudomonas fluorescens SBW25 0.57 PFLU_RS24560 site-specific tyrosine recombinase XerD 0.46 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase 0.54 60
Pseudomonas syringae pv. syringae B728a ΔmexB 0.57 Psyr_1286 tyrosine recombinase XerD subunit 0.47 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 low > 86
Pseudomonas fluorescens SBW25-INTG 0.57 PFLU_RS24560 site-specific tyrosine recombinase XerD 0.46 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase low > 109
Pseudomonas syringae pv. syringae B728a 0.57 Psyr_1286 tyrosine recombinase XerD subunit 0.47 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 low > 86
Pseudomonas aeruginosa PA14 0.56 IKLFDK_19085 site-specific tyrosine recombinase XerD 0.45 IKLFDK_20625 serine-type D-Ala-D-Ala carboxypeptidase — —
Shewanella oneidensis MR-1 0.56 SO0950 xerD integrase/recombinase XerD (NCBI ptt file) 0.69 SO1164 dacA-1 D-alanyl-D-alanine carboxypeptidase (NCBI ptt file) — —
Shewanella sp. ANA-3 0.56 Shewana3_3331 tyrosine recombinase XerD (RefSeq) 0.69 Shewana3_0991 penicillin-binding protein 6 (RefSeq) low > 73
Pseudomonas aeruginosa PUPa3 0.56 DQ20_RS42845 xerD;go_function=site-specific site-specific tyrosine recombinase XerD 0.45 DQ20_RS48190 D-alanyl-D-alanine carboxypeptidase family protein low > 101
Pseudomonas aeruginosa MRSN321 0.56 DY961_RS14280 xerD;go_function=site-specific site-specific tyrosine recombinase XerD 0.45 DY961_RS12860 D-alanyl-D-alanine carboxypeptidase family protein low > 100
Pseudomonas orientalis W4I3 0.56 QF045_RS25085 site-specific tyrosine recombinase XerD 0.46 QF045_RS26990 D-alanyl-D-alanine carboxypeptidase family protein — —
Pseudomonas sp. S08-1 0.56 OH686_17750 tyrosine recombinase XerD 0.45 OH686_09300 D-alanyl-D-alanine carboxypeptidase low > 80
Pseudomonas segetis P6 0.55 MPMX49_01575 Tyrosine recombinase XerD 0.46 MPMX49_01056 D-alanyl-D-alanine carboxypeptidase DacC low > 75
Shewanella amazonensis SB2B 0.55 Sama_2739 integrase/recombinase XerD (RefSeq) 0.69 Sama_2592 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) — —
Alteromonas macleodii MIT1002 0.55 MIT1002_00786 Tyrosine recombinase XerD 0.62 MIT1002_01848 D-alanyl-D-alanine carboxypeptidase DacC precursor — —
Pseudomonas stutzeri RCH2 0.54 Psest_3129 tyrosine recombinase XerD 0.46 Psest_0516 D-alanyl-D-alanine carboxypeptidase low > 67
Shewanella loihica PV-4 0.54 Shew_0770 tyrosine recombinase XerD (RefSeq) 0.68 Shew_2939 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) low > 60
Lysobacter sp. OAE881 0.54 ABIE51_RS04495 site-specific tyrosine recombinase XerD 0.40 ABIE51_RS03165 D-alanyl-D-alanine carboxypeptidase family protein low > 62
Marinobacter adhaerens HP15 0.53 HP15_762 site-specific tyrosine recombinase XerD 0.45 HP15_608 serine-type D-Ala-D-Ala carboxypeptidase — —
Kangiella aquimarina DSM 16071 0.51 B158DRAFT_2265 tyrosine recombinase XerD 0.50 B158DRAFT_0079 D-alanyl-D-alanine carboxypeptidase — —
Ralstonia solanacearum PSI07 0.51 RPSI07_RS12160 site-specific tyrosine recombinase XerD 0.36 RPSI07_RS22545 D-alanyl-D-alanine carboxypeptidase low > 81
Burkholderia phytofirmans PsJN 0.51 BPHYT_RS15950 tyrosine recombinase XerD 0.37 BPHYT_RS02415 cytochrome C550 low > 109
Castellaniella sp019104865 MT123 0.50 ABCV34_RS00515 site-specific tyrosine recombinase XerD 0.34 ABCV34_RS13340 D-alanyl-D-alanine carboxypeptidase family protein low > 48
Paraburkholderia bryophila 376MFSha3.1 0.50 H281DRAFT_04126 integrase/recombinase XerD 0.36 H281DRAFT_02054 penicillin-binding protein 6. Serine peptidase. MEROPS family S11 — —
Paraburkholderia graminis OAS925 0.50 ABIE53_003361 integrase/recombinase XerD 0.36 ABIE53_000626 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) low > 113
Ralstonia solanacearum IBSBF1503 0.50 RALBFv3_RS05140 site-specific tyrosine recombinase XerD 0.34 RALBFv3_RS10770 D-alanyl-D-alanine carboxypeptidase low > 76
Ralstonia solanacearum GMI1000 0.50 RS_RS12755 tyrosine recombinase XerD 0.35 RS_RS01610 D-alanyl-D-alanine carboxypeptidase — —
Methylophilus sp. DMC18 0.50 GFF2342 Tyrosine recombinase XerD 0.39 GFF2179 D-alanyl-D-alanine carboxypeptidase DacC low > 43
Ralstonia solanacearum UW163 0.50 UW163_RS08485 site-specific tyrosine recombinase XerD 0.34 UW163_RS02810 D-alanyl-D-alanine carboxypeptidase — —
Paraburkholderia sabiae LMG 24235 0.50 QEN71_RS02755 site-specific tyrosine recombinase XerD 0.36 QEN71_RS01300 D-alanyl-D-alanine carboxypeptidase family protein — —
Dechlorosoma suillum PS 0.49 Dsui_1217 tyrosine recombinase XerD 0.37 Dsui_0899 D-alanyl-D-alanine carboxypeptidase low > 51
Herbaspirillum seropedicae SmR1 0.48 HSERO_RS04265 tyrosine recombinase XerD 0.35 HSERO_RS21530 cytochrome C550 low > 78
Acidovorax sp. GW101-3H11 0.48 Ac3H11_302 Tyrosine recombinase XerD 0.32 Ac3H11_2142 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Xanthomonas campestris pv. campestris strain 8004 0.48 Xcc-8004.4441.1 Tyrosine recombinase XerD 0.42 Xcc-8004.907.1 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) low > 74
Cupriavidus basilensis FW507-4G11 0.48 RR42_RS03345 recombinase XerD 0.39 RR42_RS01680 cytochrome C550 low > 128
Variovorax sp. OAS795 0.47 ABID97_RS20265 site-specific tyrosine recombinase XerD 0.32 ABID97_RS00695 D-alanyl-D-alanine carboxypeptidase family protein low > 91
Hydrogenophaga sp. GW460-11-11-14-LB1 0.46 GFF5461 Tyrosine recombinase XerD 0.33 GFF1806 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.44 27
Dyella japonica UNC79MFTsu3.2 0.46 ABZR86_RS19225 site-specific tyrosine recombinase XerD 0.41 ABZR86_RS17490 D-alanyl-D-alanine carboxypeptidase family protein — —
Ralstonia sp. UNC404CL21Col 0.46 ABZR87_RS00795 site-specific tyrosine recombinase XerD 0.36 ABZR87_RS06610 D-alanyl-D-alanine carboxypeptidase family protein low > 80
Rhodanobacter sp. FW510-T8 0.44 OKGIIK_11520 xerD site-specific tyrosine recombinase XerD 0.42 OKGIIK_00090 serine-type D-Ala-D-Ala carboxypeptidase low > 53
Acinetobacter baumannii LAC-4 0.44 RR41_RS17765 site-specific tyrosine recombinase XerD 0.40 RR41_RS05330 D-alanyl-D-alanine carboxypeptidase PBP5/6 — —
Rhodanobacter denitrificans MT42 0.44 LRK55_RS04515 site-specific tyrosine recombinase XerD 0.41 LRK55_RS06235 D-alanyl-D-alanine carboxypeptidase family protein — —
Rhodanobacter denitrificans FW104-10B01 0.44 LRK54_RS04735 site-specific tyrosine recombinase XerD 0.41 LRK54_RS06490 D-alanyl-D-alanine carboxypeptidase low > 59
Rhodanobacter sp000427505 FW510-R12 0.43 LRK53_RS05285 site-specific tyrosine recombinase XerD 0.41 LRK53_RS17780 D-alanyl-D-alanine carboxypeptidase — —
Azospirillum sp. SherDot2 0.38 MPMX19_02643 Tyrosine recombinase XerD 0.35 MPMX19_01465 D-alanyl-D-alanine carboxypeptidase DacC — —
Sinorhizobium meliloti 1021 0.36 SMc00691 site-specific tyrosine recombinase XerD 0.22 SMc01188 penicillin-binding precursor (D-alanyl-D-alanine carboxypeptidase fraction A) transmembrane protein — —
Rhodopseudomonas palustris CGA009 0.36 TX73_002625 site-specific tyrosine recombinase XerD 0.26 TX73_014370 D-alanyl-D-alanine carboxypeptidase low > 86
Agrobacterium fabrum C58 0.35 Atu3629 site-specific tyrosine recombinase XerD 0.21 Atu1499 penicillin binding protein — —
Xanthobacter sp. DMC5 0.35 GFF3081 Tyrosine recombinase XerD 0.26 GFF689 D-alanyl-D-alanine carboxypeptidase DacC — —
Azospirillum brasilense Sp245 0.34 AZOBR_RS03240 recombinase XerD 0.33 AZOBR_RS08775 D-alanyl-D-alanine carboxypeptidase — —
Dinoroseobacter shibae DFL-12 0.33 Dshi_1611 integrase family protein (RefSeq) 0.25 Dshi_0923 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) — —
Rhodospirillum rubrum S1H 0.33 Rru_A3738 Phage integrase (NCBI) 0.38 Rru_A1704 Serine-type D-Ala-D-Ala carboxypeptidase (NCBI) — —
Bosea sp. OAE506 0.32 ABIE41_RS06100 site-specific tyrosine recombinase XerD 0.30 ABIE41_RS15965 D-alanyl-D-alanine carboxypeptidase family protein — —
Phaeobacter inhibens DSM 17395 0.31 PGA1_c14060 tyrosine recombinase XerD 0.26 PGA1_c08020 D-alanyl-D-alanine carboxypeptidase DacC — —
Magnetospirillum magneticum AMB-1 0.31 AMB_RS19880 site-specific tyrosine recombinase XerD 0.30 AMB_RS12315 D-alanyl-D-alanine carboxypeptidase low > 64
Sphingobium sp. HT1-2 0.30 GFF2416 Site-specific tyrosine recombinase XerD 0.29 GFF5300 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Sphingomonas koreensis DSMZ 15582 0.30 Ga0059261_3595 Site-specific recombinase XerD 0.28 Ga0059261_0122 D-alanyl-D-alanine carboxypeptidase — —

Not shown: 22 genomes with orthologs for CSW01_12250 only; 1 genomes with orthologs for CSW01_04845 only